BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48180.1
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314253 jgi|Araly1|314253|fgenesh1_pm.C_scaffold_1003033 1000 0.0
Ahg914306 jgi|Araly1|914306|Al_scaffold_0001_4560 448 4e-125
> Ahg314253 jgi|Araly1|314253|fgenesh1_pm.C_scaffold_1003033
Length=735
Score = 1000 bits (541), Expect = 0.0
Identities = 673/735 (92%), Gaps = 15/735 (2%)
Strand=Plus/Plus
Query 1 ATGGCACT---CCCACCCTATGATCCCAATTTCAAATTTGCATTCTCTCTTGGC---A-- 52
|||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 1 ATGGCACTCCCCCCACCCTATGATCCCAATTTCAAATTGGCATTCTCTCTCGGCAGTATC 60
Query 53 -C---GATTGCGAAACACCAAGATTACGATGAATCTGCTTCTGCTGCTGTTGTAGCGCTT 108
| ||||| ||| ||||||||| ||||||||||||||||||||||||| |||||| ||
Sbjct 61 GCAGAGATTGAGAATCACCAAGATCACGATGAATCTGCTTCTGCTGCTGTCGTAGCGGTT 120
Query 109 GATCTGATAAGCTCTGCACGGTTTGCACTTAAGCTGGATAGTGTCTATACTGAGTACTCT 168
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATCTGATAAGCTCTGCACGGTTTGCACTTAAGCTGGATAGTGTCTATACTGAGTACTCG 180
Query 169 GCTAAGTATGTGGTGGACAATGCTGCTGGCTCACACAGTGGGCGCAAGCTCACTGTCAAA 228
||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 181 GCTAAGTATTTGGTGGACAATGCTGGTGGCTCACACAGGGGGCGCAAGCTCACTGTCAAA 240
Query 229 GACTGTCTTGAGTTTGCCTTAAACAAAGGCGGCATACCGAAAGCAGAAGATTGGCCACGC 288
||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||
Sbjct 241 GACTGTCTTGAGTTTGCGATAAACAAAGGCGGCATACCAAAAGCAGAAGACTGGCCACGC 300
Query 289 TTGGGATCTGTGATAACGCCCCCATCATCGTATAAACCTGATCTCGTTTCGATGAAAGGA 348
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 TTGGGATCTGTGATAAAGCCCCCATCATCGTATAAACCTGACCTCGTTTCGATGAAAGGA 360
Query 349 CAAGTGATTGAGCCTCAGACTATTGAGGAAGCATGTGACATGGTGGTGGATCAACCAGTA 408
||||||||||||||| ||||||| ||||||||||||||| || ||||| |||||||||||
Sbjct 361 CAAGTGATTGAGCCTAAGACTATGGAGGAAGCATGTGACTTGTTGGTGCATCAACCAGTA 420
Query 409 GGAGCAAAATTGCATGTGTTCAAGCCACACATTGAACTTCAACAAGACGCAAGTGCTATA 468
||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 421 GGAGCAAAACTGCATGTGTTCATGCCACACATTGAACTTCAACAAGACGTAAGTGCTATA 480
Query 469 ACTGGCATTTACTGTGGCACGTCAGGTGAGCCAGCCAGCTATGTCGGACTTAGAGATGCC 528
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 GCTGGAATTTACTGTGGCACGTCAGGTGAGCCAGCTAGCTATGTCGGACTTAGAGATGCG 540
Query 529 ATCATCGTTGGAGTCGAGAAGATCCAAGGGAAGTCTATTGGAACTGTGAAGGTATGGTAC 588
||||| |||||| |||||| |||||||||||||| |||| ||| |||||||||||||||
Sbjct 541 ATCATAATTGGAGCCGAGAATATCCAAGGGAAGTCCATTGCAACAGTGAAGGTATGGTAC 600
Query 589 AAGAAG---TTCATATTTCTGAAAGTGGCTATGAGCAGGTGGTTTCAGTTATACTCTCCG 645
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGAAGAAGTTCATATTTCTCAAAGTGGCTATGAGCAGGTGGTTTCAGTTATACTCTCCG 660
Query 646 GATGGCACACACACGGGCATAAAGCGAACAGATTACCTTGTTGATTTTTGTGTCCCACGC 705
|||| |||||| | ||||||| ||| |||| |||| |||||||| |||||||||||||||
Sbjct 661 GATGACACACAGAAGGGCATAGAGCAAACACATTATCTTGTTGACTTTTGTGTCCCACGC 720
Query 706 CTATCCATGGATTAA 720
|||||||| |||||
Sbjct 721 CTATCCATCAATTAA 735
> Ahg914306 jgi|Araly1|914306|Al_scaffold_0001_4560
Length=708
Score = 448 bits (242), Expect = 4e-125
Identities = 536/667 (80%), Gaps = 64/667 (10%)
Strand=Plus/Plus
Query 1 ATGGCACTCCCACCCTATGATCCCAATTTCA-AATTTGCATTCTCTCTTGGC--A--CG- 54
||||||||||| || |||||||| ||||||| || |||||||||| | ||| | ||
Sbjct 1 ATGGCACTCCCTCCATATGATCCGAATTTCACAA-TTGCATTCTCAATCGGCAGACGCGA 59
Query 55 --A--TTGCGAAACACCAAGATTACGATGAATCTGCTTCTGCTGCTGTTGTAGC-GCTTG 109
| ||| ||| ||| ||| ||||||||||||||||||||||| | ||||| || ||
Sbjct 60 AAATTTTGAGAATGACCCAGAGCACGATGAATCTGCTTCTGCTGCTATCGTAGCGGC-TG 118
Query 110 ATCTGATAAGCTCTGCACGGTTTGCACTTAAGCTGGATAGTGTCTATACTGAGTACTCTG 169
| |||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||| |
Sbjct 119 AACTGATAAGCTCTGCACGGCTTGCACTTAAGCTGGATAGCGTCCACACTGAGTACTCAG 178
Query 170 CTAAGTATGTGGTGGACAATGCTGCTGGCTCAC--A----CA-GTG--GGCGCAAGCTCA 220
|| ||||| |||||||||| |||| | |||||| | || | | || |||||||||
Sbjct 179 CTCAGTATTTGGTGGACAAAGCTGGTAGCTCACGTAGGCGCAGGCGCAGGGGCAAGCTCA 238
Query 221 CTGTCAAAGACTGTCTTGAGTTTGCCTTAAACAAAGGCGGCATACCGAAAGCAGAAGATT 280
||||||||||||| ||| ||||| ||||| |||||||| |||||||||||||||||||
Sbjct 239 CTGTCAAAGACTGCCTTTTCTTTGCGTTAAAGAAAGGCGGAATACCGAAAGCAGAAGATT 298
Query 281 GGCCACGC-TTGGGATCTGTGAT-AACGCCCCCATCATCGTATAAACCTGATCTCGTTTC 338
|||||| | |||||||||| | | || |||||| |||||||| ||||||| |||||||||
Sbjct 299 GGCCAC-CTTTGGGATCTGAG-TCAAAGCCCCCCTCATCGTACAAACCTGCTCTCGTTTC 356
Query 339 GATGAAAGGACAAGTGATTGAGCCTCA-GACTATTGAGGAAGCATGTGACATGGTGGTGG 397
||||||||| |||||||||||||| | || ||| || ||| | ||||| || |||||
Sbjct 357 CATGAAAGGAGAAGTGATTGAGCCTAAGGA-TATGGACCAAGTACGTGACTTGTTGGTGC 415
Query 398 ATCAA-C--CAGTAGGAGCAAAA-TTGCATGTGTTCAAG-CCACACATTGAACTTCAACA 452
||||| | | || ||||||||| || ||||||||| || ||||||||||||||||||||
Sbjct 416 ATCAACCGGCCGTGGGAGCAAAACTT-CATGTGTTC-AGTCCACACATTGAACTTCAACA 473
Query 453 AGACGCAAGTGCTATAACTGGCATTTACTGTGGCACGTCAGGTGAGCC-A-GCCAGCTAT 510
|||||||| | | || ||| | | | | ||||||||||| | || |||||
Sbjct 474 AGACGCAA-T--T-TA-CTG---T-----G-G-CTCGTCAGGTGAGTATACGC--GCTAT 516
Query 511 GTCGGACTTAGAGATGCCATCATCGTTGGAGTCG-AGAAGATCCAAGGGAAGTCTATTGG 569
|| |||||||||||||| ||||| |||||| || ||||||||||||| ||||| || ||
Sbjct 517 GTTGGACTTAGAGATGCAATCATAGTTGGAA-CGGAGAAGATCCAAGGAAAGTCCAT-GG 574
Query 570 -AACT-GTGAAGGTATGGTACAAGAA---GTTCATATTTCTGAAAGTGGCTATGAGCAGG 624
|| | |||||||| ||||||||||| ||| | |||||| ||||||||| ||||||||
Sbjct 575 CAA-TAGTGAAGGTTTGGTACAAGAATAAGTTTACATTTCTCAAAGTGGCTTTGAGCAGG 633
Query 625 -TGGTTT 630
|| |||
Sbjct 634 ATGTTTT 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28172835663
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5