BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G48190.1

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473956 jgi|Araly1|473956|fgenesh2_kg.1__3910__AT1G48190.1         503    4e-142


> Ahg473956 jgi|Araly1|473956|fgenesh2_kg.1__3910__AT1G48190.1
Length=389

 Score =  503 bits (272),  Expect = 4e-142
 Identities = 354/392 (90%), Gaps = 12/392 (3%)
 Strand=Plus/Plus

Query  1    ATGCGGGTGGACCGGAGCTCCTCTTCCTCCACTGTAAGTCTACTTGAGGGGAAGATATAT  60
            |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| 
Sbjct  1    ATGCGGGTTGACCGGAGCTCCTCTTCCTCCTCTGTAAGTCTACTTGACGGGAAGATATAC  60

Query  61   GTAGCAGGAGGGTTTGATCCAAAGACTCACACTTGGAGCTCTGTGACTAGCCCTAGCGCG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTAGCAGGAGGGTTTGATCCAAAGACTCACACTTGGAGCTCTGTGACTAGCCCTAGCGCG  120

Query  121  GTGATACGGAATGAAAGTGTAGCTGAACACAAAAGCTTGGGACTTGGTGGAAAATTCTAC  180
            | |||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||| ||
Sbjct  121  GCGATACGCAATGGAAGGGTAGCTGAACACAGAAGCTTGGGACTTGGTGGAAAATTCCAC  180

Query  181  CTCTTTGGTTATGACTC-AGATAAGTCTGCGGTGGTTTACAATCCCAAAGAAGACAACGT  239
             |||||||| ||| ||| | || |||||| |||||||||||||||||| ||||||||| |
Sbjct  181  ATCTTTGGTGATGTCTCTA-ATGAGTCTGGGGTGGTTTACAATCCCAAGGAAGACAACAT  239

Query  240  CTTGTTCTATAGGTTTCACGGACTCTTCCATTGGTATGACTATAAGGGAAACTTT-TGGA  298
            |||||||||| ||||||||| ||||||||| |||||||||||||||| | | ||| ||||
Sbjct  240  CTTGTTCTATTGGTTTCACGAACTCTTCCAGTGGTATGACTATAAGGTACA-TTTATGGA  298

Query  299  AGCAAGTGAATGGTCTTG--G----GCCAGTTGCTTGTACGGAGAAAGT-AGCGATTCTC  351
            |||||||||| |||||||  |    |||||||||||||||||||||||| | ||||||||
Sbjct  299  AGCAAGTGAACGGTCTTGAAGTTTTGCCAGTTGCTTGTACGGAGAAAGTTA-CGATTCTC  357

Query  352  GCAGCCCTCGATACGTTTGACAACGCAAGATG  383
            |||||||| ||||||||||||||| || ||||
Sbjct  358  GCAGCCCTTGATACGTTTGACAACACAGGATG  389



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13736012040


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5