BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48195.1
Length=450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923145 jgi|Araly1|923145|scaffold_104426.1 438 1e-122
> Ahg923145 jgi|Araly1|923145|scaffold_104426.1
Length=289
Score = 438 bits (237), Expect = 1e-122
Identities = 267/282 (95%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 2 GAGAAGAGAAAATATGTCTGAAGAAAAATTCCCAGAACGTCCAGGCGAACCAGAGTGCAG 61
|||||||||||||||||| || | ||| ||||||||||||||||||||||||||||||||
Sbjct 8 GAGAAGAGAAAATATGTCCGACGGAAATTTCCCAGAACGTCCAGGCGAACCAGAGTGCAG 67
Query 62 CTATTATCTTAGAACTGGAAACTGTTATCTGAAACAAAACTGCAAATACCATCACCCGAA 121
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 68 CTATTATCTTAGAACTGGAAACTGTTATCTGAAACAAAATTGCAAATACCATCACCCCAA 127
Query 122 GAATATAACGCCGAGCGAGCCTCAATGTACTCTCAATGACAAGGGCTTACCATTAAGACC 181
||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 128 GAATATAACGCCGAGAGAGCCTCCATGTCCTCTCAATGACAAGGGCTTACCATTAAGACC 187
Query 182 TGGTCAAGCCATTTGCCCGCATTACAGTCGCTTCGGCATTTGCAGATCCGGTCCGACTTG 241
|| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 188 TGATCAAGCCATTTGCCCACATTACAGTCGCTTCGGCATTTGCAAATCCGGTCCGACTTG 247
Query 242 TAAATTCGACCATTTTACCTAACCATCATCCTCAACTTGCAA 283
|||||||||||||| ||||||||||||||||||| || ||||
Sbjct 248 TAAATTCGACCATTCTACCTAACCATCATCCTCAGCTCGCAA 289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16254280914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5