BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48200.1
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913849 jgi|Araly1|913849|Al_scaffold_0001_4103 512 1e-144
Ahg324508 jgi|Araly1|324508|fgenesh1_pm.C_scaffold_5002052 484 3e-136
> Ahg913849 jgi|Araly1|913849|Al_scaffold_0001_4103
Length=354
Score = 512 bits (277), Expect = 1e-144
Identities = 331/357 (93%), Gaps = 3/357 (1%)
Strand=Plus/Plus
Query 107 ATGGCGAACAAGATTGCAATGTTTCTCTCGGAAGCAATGAACAACAATGCTGTGATAAAC 166
|||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||
Sbjct 1 ATGGCGAACAAGATTGCAATGTTTCTCTCGGAGGCAATGAACAACAATGTTGTCATAAAC 60
Query 167 ACGTGTCTAGGAGTATCGTTTGTGGTTTTGGGATTGAGATCTGATAAACAGCAGAAGTAT 226
|| ||| | |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 ACTTGTTTGGGAGTATCATTTGTGGTTTTGGGATTGAGATCTGATAAACAGCAAAAGTAT 120
Query 227 GTTGAGGCCTTAGCAGAGCAGAAGGAGTCACTCTTCAAGTCTAATAAGGCAATGAAACTC 286
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 121 GTTGAGGCCTTAGCAGAGCAGAAGGATTCACTCTTCAAGTCTAATAAGGAAATGAAAGTC 180
Query 287 ACCATGTGGGAGTGGAAACAGCAGCTCTTTGCTGAAGCTGCCTCTGCGGGTAATGCCGCG 346
|| || |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 181 ACAATATGGGAGTGGAAACAGCAGCTCTTTGCTGAAGCCGCTTCTGCGGGTAATGCCGCT 240
Query 347 GTTGTTCCTTTGTCGACGCTTAAGGCCATCTATGGTGAAGTTACCACCACAACCAATCAA 406
||||||||| ||||||||||||||||||||||||| |||| |||| ||||||| ||||
Sbjct 241 GTTGTTCCTCTGTCGACGCTTAAGGCCATCTATGGCGAAG---CCACAACAACCACTCAA 297
Query 407 TCTGGTGACACAGCCAAGGAAGATTCTAAAGTGTCCACTCCCAAGATCATGATATGA 463
||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 298 TCTGGTGACACAGCCAAGGAAGAGTCTAAAGTGTCTACCCCCAAGATCATGATATGA 354
> Ahg324508 jgi|Araly1|324508|fgenesh1_pm.C_scaffold_5002052
Length=354
Score = 484 bits (262), Expect = 3e-136
Identities = 326/357 (91%), Gaps = 3/357 (1%)
Strand=Plus/Plus
Query 107 ATGGCGAACAAGATTGCAATGTTTCTCTCGGAAGCAATGAACAACAATGCTGTGATAAAC 166
||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||
Sbjct 1 ATGGCGAACAAGATTGCAATGTTTCTCTCTGAAGCAATGAATAACAATGTTGTCATAAAC 60
Query 167 ACGTGTCTAGGAGTATCGTTTGTGGTTTTGGGATTGAGATCTGATAAACAGCAGAAGTAT 226
|| ||| | ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 61 ACTTGTTTGGGAGTATCGTTTGTGGTTTTGGGATTGAGATCTGATAAACAACAAAAGTAT 120
Query 227 GTTGAGGCCTTAGCAGAGCAGAAGGAGTCACTCTTCAAGTCTAATAAGGCAATGAAACTC 286
|||||||||||||||||||||||||| || |||||||||||||| |||| ||||||| ||
Sbjct 121 GTTGAGGCCTTAGCAGAGCAGAAGGATTCGCTCTTCAAGTCTAACAAGGAAATGAAAGTC 180
Query 287 ACCATGTGGGAGTGGAAACAGCAGCTCTTTGCTGAAGCTGCCTCTGCGGGTAATGCCGCG 346
|| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 ACAATATGGGAGTGGAAACAGCAGCTCTTTGCTGAAGCCGCCTCTGCGGGTAATGCCGCT 240
Query 347 GTTGTTCCTTTGTCGACGCTTAAGGCCATCTATGGTGAAGTTACCACCACAACCAATCAA 406
||||||||| |||| | |||||||||||||||||| |||| |||| ||||||| ||||
Sbjct 241 GTTGTTCCTCTGTCTAAGCTTAAGGCCATCTATGGCGAAG---CCACAACAACCACTCAA 297
Query 407 TCTGGTGACACAGCCAAGGAAGATTCTAAAGTGTCCACTCCCAAGATCATGATATGA 463
|||||||||||| |||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 298 TCTGGTGACACAACCAAGGAAGAGTCTAAAGTGTCTACCCCCAAGATCATGATATGA 354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28363450248
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5