BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48210.1
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913850 jgi|Araly1|913850|Al_scaffold_0001_4104 1703 0.0
Ahg479217 jgi|Araly1|479217|fgenesh2_kg.3__1918__AT3G17410.1 1219 0.0
> Ahg913850 jgi|Araly1|913850|Al_scaffold_0001_4104
Length=2058
Score = 1703 bits (922), Expect = 0.0
Identities = 989/1022 (97%), Gaps = 2/1022 (0%)
Strand=Plus/Plus
Query 188 ATGAGCTGTTTTGGTTGGTGTGGGAGTGAGGATTTTCGCAACGCTACTGACACTGGCCCA 247
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||
Sbjct 1 ATGAGCTGTTTTGGTTGGTGTGGGAGTGAGGATTTTCGCAGCGCTGCTGACACTGGTCCA 60
Query 248 AGGCCAGCGCATAACCCAGCAGGTTACAATGGAGGCCACTACCAAAGAGCTGATCCACCC 307
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 AGACCAGCGCATAACCCAGCAGGTTACAATGGAGGCCACTATCAAAGAGCTGATCCACCC 120
Query 308 ATGAACCAGCCTGTTATTCCCATGCAGCCTATTTCTGTACCAGCCATTCCAGTGGATGAG 367
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGAACCAGCCAGTTATTCCCATGCAGCCTATTTCTGTACCAGCCATTCCAGTGGATGAG 180
Query 368 CTGAGAGATATAACTGATAACTATGGTTCAAAGACCTTGATCGGCGAGGGTTCTTATGGA 427
||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 181 TTGAGAGATATAACCGATAACTATGGTTCAAAGACCTTGATCGGTGAAGGTTCATATGGA 240
Query 428 AGAGTGTTTTATGGTGTTCTTAAAAGCGGTGGTGCAGCTGCCATCAAGAAACTTGACTCT 487
||||||||||| |||||||||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 241 AGAGTGTTTTACGGTGTTCTTAGAAGCGGTGGGGCAGCTGCTATCAAGAAACTTGACTCT 300
Query 488 AGTAAGCAGCCAGATCAAGAATTTCTTTCCCAGATATCAATGGTTTCGAGATTGCGACAT 547
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTAAGCAGCCAGATCAAGAATTTCTTTCCCAGATATCAATGGTTTCGAGATTGCGACAC 360
Query 548 GACAATGTTACTGCACTTATGGGCTATTGTGTTGATGGCCCTCTCCGTGTTCTTGCTTAT 607
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 361 GACAATGTTACTGCACTTATCGGTTATTGTGTTGATGGCCCTCTCCGTGTTCTTGCTTAT 420
Query 608 GAATTTGCTCCTAAAGGATCTCTTCATGATACTCTTCATGGCAAAAAAGGTGCCAAAGGA 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAATTTGCTCCTAAAGGATCTCTTCATGATACTCTTCATGGCAAAAAAGGTGCCAAAGGA 480
Query 668 GCACTTAGAGGTCCTGTTATGACGTGGCAACAGAGAGTCAAAATCGCCGTTGGTGCGGCC 727
||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 481 GCACTGAGAGGTCCTGTTATGACGTGGCAACAGAGAGTTAAAATCGCTGTTGGTGCAGCC 540
Query 728 AGAGGACTTGAGTACTTGCATGAGAAGGTGAGCCCTCAGGTTATCCACCGAGACATCAAA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGAGGACTTGAGTACTTGCATGAGAAGGTGAGCCCTCAGGTTATCCACCGAGACATCAAA 600
Query 788 TCCAGCAACGTACT-TCTGTTTGATGATGATGTTGCCAAAATTGGTGATTTTGATCTGTC 846
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCCAGCAACGTACTAT-TGTTTGATGATGATGTTGCCAAAATTGGTGATTTTGATCTGTC 659
Query 847 TGATCAAGCCCCTGACATGGCTGCTCGCCTTCACTCAACTCGTGTGCTAGGAACCTTTGG 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGATCAAGCCCCTGACATGGCTGCTCGCCTTCACTCAACTCGTGTGCTAGGAACCTTTGG 719
Query 907 CTACCACGCTCCAGAATATGCAATGACAGGAACGTTGAGCTCAAAGAGCGATGTGTACAG 966
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 CTATCACGCTCCAGAATATGCAATGACAGGAACGTTGAGCTCAAAGAGCGATGTATACAG 779
Query 967 TTTTGGCGTTGTTCTGCTGGAGCTCCTAACTGGTCGTAAACCAGTCGATCATACCTTACC 1026
|||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 780 TTTTGGTGTTGTTCTGCTGGAGCTCCTTACGGGTCGTAAACCAGTGGATCATACCTTACC 839
Query 1027 GCGTGGACAACAAAGTCTAGTGACATGGGCAACCCCTAAACTAAGTGAAGACAAAGTGAA 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCGTGGACAACAAAGTCTAGTGACATGGGCAACCCCTAAACTAAGTGAAGACAAAGTGAA 899
Query 1087 GCAATGCGTTGATGCAAGACTACTCGGAGAGTACCCTCCCAAAGCTGTTGGCAAGCTAGC 1146
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCTATGCGTTGATGCAAGACTACTCGGAGAGTACCCTCCCAAAGCTGTTGGCAAGCTAGC 959
Query 1147 TGCAGTGGCTGCACTCTGTGTGCAATATGAGGCAAATTTCAGACCAAACATGAGCATTGT 1206
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 TGCGGTGGCTGCACTCTGTGTGCAATATGAGGCAAATTTTAGACCAAACATGAGCATTGT 1019
Query 1207 GG 1208
||
Sbjct 1020 GG 1021
Score = 1061 bits (574), Expect = 0.0
Identities = 869/1009 (86%), Gaps = 30/1009 (3%)
Strand=Plus/Plus
Query 277 TGGAGGCCACTACCAAAGAGCTGATCCACCCATGAACCAGCCTGTTATTCCCATGCAGCC 336
|||||||||| | |||||||| ||| || ||||||||||||| || |||| |||||||||
Sbjct 1044 TGGAGGCCACCATCAAAGAGCAGATTCATCCATGAACCAGCCAGTAATTCACATGCAGCC 1103
Query 337 TATTTCTGTACCAGCCATTCCAGTGGATGAGCTGAGAGATATAACTGATAACTATGGTTC 396
|||| ||||||| ||||||||||||||||| ||| ||||||||| ||||||| | ||||
Sbjct 1104 TATTGCTGTACCGGCCATTCCAGTGGATGAATTGAAAGATATAACCGATAACTTTAGTTC 1163
Query 397 AAAGACCTTGATCGGCGAGGGTTCTTATGGA-AGAGTGTTTTATGGTGTTCTTAAAAGCG 455
| || || ||||| |||||||| ||| || | | ||||||| ||||||||||||||||
Sbjct 1164 AGAGGTATTAATCGGTGAGGGTTCATAT-GACAAATTGTTTTACGGTGTTCTTAAAAGCG 1222
Query 456 GTGGTGCAGCTGCCATCAAGAAACTTGACTCTAGTAAGCAGCCAGATCAAGAATTTCTTT 515
|| | ||||||||||||||||||| || ||| |||||| ||||||||||||||||||
Sbjct 1223 GTAAAGAAGCTGCCATCAAGAAACTTTACCCTACTAAGCATTCAGATCAAGAATTTCTTT 1282
Query 516 CCCAGATATCAATGGTTTCGAGATTGCGACATGACAATGTTACTGCACTTATGGGCTATT 575
||||| ||||||||||||| ||| ||| ||| || |||||| ||||||||| || ||||
Sbjct 1283 CCCAGGTATCAATGGTTTCAAGAGTGCAACACGAGAATGTTGTTGCACTTATCGGTTATT 1342
Query 576 GTGTTGATGGCCCTCTCCGTGTTCTTGCTTATGAATTTGCTCCTAAAGGATCTCTTCATG 635
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1343 GTGTTGATGGCCCTCTCCGTGTTCTTGCTTATGAATATGCTCCTAAAGGGTCTCTTCATG 1402
Query 636 ATACTCTTCATGG-CAAAAAAGGTGCCAAAGGAGCACTTAGA-GGTCCTGTTATGACGTG 693
|| |||||| || ||||| |||| || ||||||||| | | ||||||||| |||||||
Sbjct 1403 ATGTTCTTCACGGTCAAAAT-GGTGTCACAGGAGCACT-ACAAGGTCCTGTTTTGACGTG 1460
Query 694 GCAACAGAGAGTCAAAATCGCCGTTGGTGCGGCCAGAGGACTTGAGTACTTGCATGAGAA 753
|||||| |||||||||||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct 1461 GCAACAAAGAGTCAAAATCGCTGTTGGTGTAGCCAGAGGACTTGAGTACTTGCATAAGAA 1520
Query 754 GGTGAGCCCTCAGGTTATCCACCGAGACATCAAATCCAGCAACGTACTTCTGTTTGATGA 813
|||| ||||||||||||||||||||| |||| |||||||||| ||||||||||||||||
Sbjct 1521 AGTGAACCCTCAGGTTATCCACCGAGAGATCAGATCCAGCAACATACTTCTGTTTGATGA 1580
Query 814 TGATGTTGCCAAAATTGGTGA-TTTTGATCTGTCTGATCAAG--C---CCC-TGACATGG 866
||||||||||||||||||||| |||| |||||| | ||||| | ||| ||||||||
Sbjct 1581 TGATGTTGCCAAAATTGGTGAATTTT-ATCTGTATTATCAATATCAATCCCCTGACATGG 1639
Query 867 CTGCTCGCCTTCACTCAACT---C-G--T-GT--GCTAGGAACCTT--TGGCTAC-CAC- 913
|||||||| |||| | || | | | | || |||| || || | || |||
Sbjct 1640 CTGCTCGCGTTCATTTAAGTTGTCTGGATCGTCTGCTACTAAGATTACTTCCTTTTCACT 1699
Query 914 GCTCCAGAATATG-CAATGACAGGAACGTTGAGCTCAAAGAGCGATGTGTACAGTTTTGG 972
| |||||||| | ||| |||||||| |||| | ||||||||||||| |||| ||||||
Sbjct 1700 G-TCCAGAAT-TCACAAAGACAGGAATATTGACCACAAAGAGCGATGTCTACACTTTTGG 1757
Query 973 CGTTGTTCTGCTGGAGCTCCTAACTGGTCGTAAACCAGTCGATCATACCTTACCGCGTGG 1032
|||||||||| |||| ||||| || || ||||||||| ||||||||||||||||||||||
Sbjct 1758 CGTTGTTCTGTTGGAACTCCTTACGGGCCGTAAACCATTCGATCATACCTTACCGCGTGG 1817
Query 1033 ACAACAAAGTCTAGTGACATGGGCAACCCCTAAACTAAGTGAAGACAAAGTGAAGCAATG 1092
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1818 ACAACAAAGACTAGTGACATGGGCAACCCCTAAACTAAGTGAAGACAAAGTGAAGCAATG 1877
Query 1093 CGTTGATGCAAGACTACTCGGAGAGTACCCTCCCAAAGCTGTTGGCAAGCTAGCTGCAGT 1152
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || ||
Sbjct 1878 CGTTGATGCAAGACTACTCGGAGAGTACCCTCTCAAAGCTGTTGCCAAGCTAGCCGCGGT 1937
Query 1153 GGCTGCACTCTGTGTGCAATATGAGGCAAATTTCAGACCAAACATGAGCATTGTGGTGAA 1212
|||||||||||||||||| ||||| || |||| |||||| ||||||||||| |||||||
Sbjct 1938 GGCTGCACTCTGTGTGCAGTATGATCCAGATTTTAGACCAGACATGAGCATTCTGGTGAA 1997
Query 1213 GGCACTTCAACCTCTTTTAAACCCTCCTCGTTCTGCTCCGCAGACTCCA 1261
| |||||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct 1998 GACACTTCAACCTCTTTTAAACCCTCCTTGTTCTTCTCCTCAGACTCCA 2046
> Ahg479217 jgi|Araly1|479217|fgenesh2_kg.3__1918__AT3G17410.1
Length=1424
Score = 1219 bits (660), Expect = 0.0
Identities = 971/1121 (87%), Gaps = 22/1121 (2%)
Strand=Plus/Plus
Query 170 GTGTGAGAGAAGGGTGTAATGAGCTGTTTTGGTTGGTGTGG-GAGTGAGGATTTTCGCA- 227
|||| |||||| | ||||||||||||||||| || ||||| | |||||||||| || |
Sbjct 140 GTGTTAGAGAA--GCGTAATGAGCTGTTTTGGCTGTTGTGGTG-GTGAGGATTTCCGTAG 196
Query 228 ACGCTACTGACACTGGCCCAAGGCCAGCGCATAACCCAGCAGGTTACAATGGAGGCCACT 287
| | | |||| ||||| |||| ||| | ||||||| ||| ||||||||||||||| || |
Sbjct 197 A-GTTGCTGAAACTGGACCAAAGCCTGTGCATAACACAGGAGGTTACAATGGAGGTCA-T 254
Query 288 -ACCAAAGAGCTGATCCACCCATGAACCAGCCTGTTATTCCCATGCAGCCTATTTCTGTA 346
| ||||| || ||||| |||| ||||| || ||||||| ||||||||||| |||||
Sbjct 255 CATCAAAGGGCAGATCCTCCCAAGAACCTTCCAGTTATTCAGATGCAGCCTATCTCTGTT 314
Query 347 CCAGCCATTCCAG-TGGATGAGCTGAGAGATATAACTGATAACTATGGTTCAAAGACCTT 405
| |||||||||| | ||||| |||| |||||||| |||||||||||| |||| ||||
Sbjct 315 GCGGCCATTCCAGCT-GATGAATTGAGGGATATAACGGATAACTATGGTGGAAAGTCCTT 373
Query 406 GATCGGCGAGGGTTCTTATGGAAGAGTGTTTTATGGTGTTCTTAAAAGCGGT-GGTGCAG 464
||| || |||||||| ||||||||||||||||||||| ||||||||| ||| | ||||
Sbjct 374 GATTGGTGAGGGTTCATATGGAAGAGTGTTTTATGGTATTCTTAAAAATGGTAAG-GCAG 432
Query 465 CTGCCATCAAGAAACTTGACTCTAGTAAGCAGCCAGATCAAGAATTTCTTTCCCAGATAT 524
||||||| |||||||| || ||||||||||| |||||||||||||||||| ||||| |||
Sbjct 433 CTGCCATTAAGAAACTGGATTCTAGTAAGCAACCAGATCAAGAATTTCTTGCCCAGGTAT 492
Query 525 CAATGGTTTCGAGATTGCGACATGACAATGTTACTGCACTTATGGGCTATTGTGTTGATG 584
|||||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||||
Sbjct 493 CAATGGTTTCGAGATTGCGACAAGACAATGTTGTTGCGCTTCTGGGCTATTGTGTTGATG 552
Query 585 GCCCTCTCCGTGTTCTTGCTTATGAATTTGCTCCTAAAGGATCTCTTCATGATACTCTTC 644
|||| |||||||||||||||||||||| ||||||||| |||||||||||||||| |||||
Sbjct 553 GCCCACTCCGTGTTCTTGCTTATGAATATGCTCCTAATGGATCTCTTCATGATATTCTTC 612
Query 645 ATGG-CAAAAAAGGTGCCAAAGGAGCACTTAG--AGGTCCTGTTATGACGTGGCAACAGA 701
|||| | |||||||| |||||||||| || |||||||||| || ||||||| ||||
Sbjct 613 ATGGTC-GAAAAGGTGTTAAAGGAGCAC--AGCCAGGTCCTGTTCTGTCGTGGCACCAGA 669
Query 702 GAGTCAAAATCGCCGTTGGTGCGGCCAGAGGACTTGAGTACTTGCATGAGAAGGTGAGCC 761
|||||||||| || ||||||||||| |||||||| ||||||||||||||||||| || ||
Sbjct 670 GAGTCAAAATTGCTGTTGGTGCGGCTAGAGGACTCGAGTACTTGCATGAGAAGGCGAACC 729
Query 762 CTCAGGTTATCCACCGAGACATCAAATCCAGCAACGTACTTCTGTTTGATGATGATGTTG 821
|||| ||||||||| ||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 730 CTCATGTTATCCACAGAGACATCAAATCCAGCAATGTACTTCTGTTCGACGATGATGTTG 789
Query 822 CCAAAATTGGTGATTTTGATCTGTCTGATCAAGCCCCTGACATGGCTGCTCGCCTTCACT 881
|||| |||| ||||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 790 CCAAGATTGCTGATTTTGATCTGTCCAACCAAGCCCCTGACATGGCTGCGCGCCTTCACT 849
Query 882 CAACTCGTGTGCTAGGAACCTTTGGCTACCACGCTCCAGAATATGCAATGACAGGAACGT 941
|||| |||||||| |||||||||||||| ||||||||||| ||||||||||| || ||||
Sbjct 850 CAACCCGTGTGCTCGGAACCTTTGGCTATCACGCTCCAGAGTATGCAATGACGGGGACGT 909
Query 942 TGAGCTCAAAGAGCGATGTGTACAGTTTTGGCGTTGTTCTGCTGGAGCTCCTAACTGGTC 1001
||||| ||||||| ||||| || ||||||||||||||||||||||||||||| || ||||
Sbjct 910 TGAGCACAAAGAGTGATGTTTATAGTTTTGGCGTTGTTCTGCTGGAGCTCCTCACAGGTC 969
Query 1002 GTAAACCAGTCGATCATACCTTACCGCGTGGACAACAAAGTCTAGTGACATGGGCAACCC 1061
|||||||||| |||||||||||||| |||||||| || ||||| ||||||||||||||||
Sbjct 970 GTAAACCAGTTGATCATACCTTACCACGTGGACAGCAGAGTCTTGTGACATGGGCAACCC 1029
Query 1062 CTAAACTAAGTGAAGACAAAGTGAAGCAATGCGTTGATGCAAGACTACTCGGAGAGTACC 1121
||||||| ||||||||||| |||||||| || ||||| ||||||||| |||||| || |
Sbjct 1030 CTAAACTGAGTGAAGACAAGGTGAAGCAGTGTGTTGACGCAAGACTAAACGGAGAATATC 1089
Query 1122 CTCCCAAAGCTGTTGGC-AAGCTAGCTGCAGTGGCTGCACTCTGTGTGCAATATGAGGCA 1180
||||||||||||||| | ||||||||||| || |||||||| ||||||||||||||||||
Sbjct 1090 CTCCCAAAGCTGTTG-CTAAGCTAGCTGCGGTTGCTGCACTGTGTGTGCAATATGAGGCA 1148
Query 1181 AATTTCAGACCAAACATGAGCATTGTGGTGAAGGCACTTCAACCTCTTT-TAAACCCTCC 1239
| ||||| |||||||||||||| ||||||||||| ||||| || || | || |||||
Sbjct 1149 GACTTCAGGCCAAACATGAGCATAGTGGTGAAGGCTCTTCAGCCA-TTGCTCAATCCTCC 1207
Query 1240 TCGTTCTGCTCCGCAGACTCCACATAGGAACCCCTACTGAT 1280
||| |||||||| ||||| || || |||||||| || ||||
Sbjct 1208 TCGCTCTGCTCCTCAGACACCGCACAGGAACCCGTATTGAT 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54926133290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5