BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48230.1
Length=1760
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314258 jgi|Araly1|314258|fgenesh1_pm.C_scaffold_1003038 1762 0.0
Ahg479219 jgi|Araly1|479219|fgenesh2_kg.3__1920__AT3G17430.1 1107 0.0
Ahg923150 jgi|Araly1|923150|scaffold_104431.1 211 1e-53
> Ahg314258 jgi|Araly1|314258|fgenesh1_pm.C_scaffold_1003038
Length=1128
Score = 1762 bits (954), Expect = 0.0
Identities = 1075/1129 (95%), Gaps = 26/1129 (2%)
Strand=Plus/Plus
Query 376 ATGGCGAAGATGATAAACAAGACGCTTGTACTTACATATATCTACTTACTAATCTACATT 435
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1 ATGGCGAAGATGATAAACAAGACGCTTGTACTTACCTATATCTACTTACTGATCTACATT 60
Query 436 ATTCTTTCTTCTGGAGTTATAC----T----A--T-A---C---AAC-A----A--GTGG 471
||||||||||||||||||||| | | | | | ||| | | |||
Sbjct 61 CTTCTTTCTTCTGGAGTTATACTATATAACAAGGTGATTGCGGAAACTACTTTACTTTGG 120
Query 472 GTTCTATCTCCGAAATACTTCAATTTTCCACTTCCTATAACATTGACAATGATCCATATG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTCTATCTCCGAAATACTTCAATTTTCCACTTCCTATAACATTGACAATGATCCATATG 180
Query 532 GGATTTTCTGGATTCGTGGCTTTCCTTCTTATTCGGGTATTCAAGGTTGTCTCTCCTGTT 591
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 181 GGATTTTCTGGATTTGTGGCTTTCCTTCTTATTCGAGTTTTCAAGGTTGTCTCTCCTGTT 240
Query 592 AAAATGACTTTCGAAATATATGTGACATGTGTGGTGCCTATAAGCGCATTCTTTGCATCC 651
||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 241 AAAATGACTTTTGAAATATATGTGACCTGTGTGGTGCCTATAAGTGCATTCTTTGCATCC 300
Query 652 AGTCTCTGGTTTGGAAATACTGCATATTTGCACATTTCAGTTGCTTTCATACAGATGCTC 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTCTCTGGTTTGGAAATACTGCATATTTGCACATTTCAGTTGCTTTCATACAGATGCTC 360
Query 712 AAAGCACTAATGCCGGTAGCAACATTTCTTATGGCCGTTGTTTGTGGCACGGACAAAGCA 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAGCACTAATGCCGGTAGCAACATTTCTTATGGCCGTTGTTTGTGGCACGGACAAAGCA 420
Query 772 AGGTGTGACGTGTTCATGAACATGGTGCTGGTGAGTGTTGGAGTTGTAGTATCCTCCTAT 831
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 421 AGATGTGACGTGTTCATGAACATGGTGCTGGTCAGTGTTGGAGTTGTAGTATCTTCCTAT 480
Query 832 GGGGAAATTAATTTCAATGTAATCGGCACGGTCTACCAGGTCATGGGAATATTTGCTGAA 891
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 GGGGAAATTAATTTCAATGTAATCGGCACGGTCTACCAGGTCATGGGAATCTTTGCTGAA 540
Query 892 GCACTTAGACTGGTGCTAACTCAAGTTCTTCTTCAGAAAAAGGGCTTGACGTTGAACCCA 951
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 541 GCACTTAGACTGGTGCTAACTCAAGTTCTTCTTCAGAAGAAGGGCTTGACATTGAACCCA 600
Query 952 GTCACCAGCTTATACTATATAGCTCCATGCAGCTTTGTTTTCCTGTCCTTGCCTTGGTAT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTCACCAGCTTATACTATATAGCTCCATGCAGCTTTGTTTTCCTGTCCTTGCCTTGGTAT 660
Query 1012 GTGCTGGAGAAACCAAATATAGATGTCTCGCAGATCCAATTCAACTTCTGGATCTTTTTC 1071
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTACTGGAGAAACCGAATATAGATGTCTCGCAGATCCAATTCAACTTCTGGATCTTTTTC 720
Query 1072 TCAAACGCTCTCTGCGCACTTGCCTTAAACTTCTCCATATTCTTAGTAATCGGAAGAACA 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCAAACGCTCTCTGCGCACTTGCCTTAAACTTCTCCATATTCTTAGTAATCGGAAGAACA 780
Query 1132 GGCGCTGTAACAATCCGGGTTGCTGGGGTTCTCAAAGACTGGATTCTCATAGCCCTCTCC 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGCGCTGTAACAATCCGGGTTGCTGGGGTTCTCAAAGACTGGATTCTCATAGCCCTCTCC 840
Query 1192 ACTGTCATATTTCCTGAGTCCACAATCACTGGGCTGAATATAACTGGATATGCTATAGCG 1251
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 841 ACTGTCATATTTCCTGAGTCCACAATCACTGGGCTGAATATTACTGGATATGCAATAGCG 900
Query 1252 CTCTGTGGTGTTGTAATGTACAATTACATAAAAATCAAGGATGTAAAAGCGATTCAACCA 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTCTGTGGTGTTGTAATGTACAATTACATAAAAATCAAGGATGTAAAAGCGATTCAACCA 960
Query 1312 ACCA-CTGACAGCCTCCCAGATCGAATCACGAAGGACTGGAAGGAGAAGAATTCGTCAGA 1370
|||| | ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 961 ACCAGC-GACAGCCTCCCAGATCGAATCACGAAGGATTGGAAGGAGAAGAATTCTTCAGA 1019
Query 1371 TGGGGGGAGCCCCAGAGGATTGGAGCTTAACGATGAAGAAGCCCCTCTGATAACGTCGCG 1430
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1020 TGGGGGGAGCCCCAGAGGATTAGAGCTTAACGATGAAGAAGCCCCTCTGATAACATCGCG 1079
Query 1431 GTTGTCGCATATTGGCCGGACTCAGCTTGGAAACCACACGGCAGTCTGA 1479
|||||||||||| || ||||||||||||||||||||||| || ||||||
Sbjct 1080 GTTGTCGCATATCGGGCGGACTCAGCTTGGAAACCACACCGCCGTCTGA 1128
> Ahg479219 jgi|Araly1|479219|fgenesh2_kg.3__1920__AT3G17430.1
Length=1659
Score = 1107 bits (599), Expect = 0.0
Identities = 850/971 (88%), Gaps = 18/971 (2%)
Strand=Plus/Plus
Query 376 ATGGCGAAGATGATAAACAAGACGCTTGTACTTACATATATCTACTTACTAATCTACATT 435
||||| |||||||||||||||||||||||||| || ||||||||||| || |||||||||
Sbjct 373 ATGGCAAAGATGATAAACAAGACGCTTGTACTAACTTATATCTACTTGCTGATCTACATT 432
Query 436 ATTCTTTCTTCTGGAGTTATACTATACAACAAGTGGGTTCTATCTCCGAAATACTTCAAT 495
|| |||||||||||||||||||| ||||| ||||||||| |||| || ||||||||||||
Sbjct 433 ATACTTTCTTCTGGAGTTATACTGTACAATAAGTGGGTTTTATCCCCAAAATACTTCAAT 492
Query 496 TTTCCACTTCCTATAACATTGACAATGATCCATATGGGATTTTCTGGATTCGTGGCTTTC 555
||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||
Sbjct 493 TTTCCACTTCCTATAACGCTGACAATGATCCATATGGGGTTTGCTGGATTCGTGGCTTTC 552
Query 556 CTTCTTATTCGGGTATTCAAGGTTGTCT-CTCCTGTTAAAATGAC-TTTCGAAATATATG 613
||||||||||| || ||||||||||| | |||| ||||||||||| ||| ||||||||||
Sbjct 553 CTTCTTATTCGCGTCTTCAAGGTTGT-TGCTCCGGTTAAAATGACATTT-GAAATATATG 610
Query 614 TGACATGTGTGGTGCCTATAAGCGCATTCTTTGCATCCAGTCTCTGGTTTGGAAATACTG 673
|| |||||||| |||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 611 CAACCTGTGTGGTACCTATAAGCGCATTTTTTGCATCAAGTCTCTGGTTTGGCAATACTG 670
Query 674 CATATTTGCACATTTCAGTTGCTTTCATACAGATGCTCAAAGCACTAATGCCGGTAGCAA 733
|||||||||||||||| ||||| ||||| |||||||| ||||| |||||||| ||||| |
Sbjct 671 CATATTTGCACATTTCTGTTGCCTTCATTCAGATGCTGAAAGCTCTAATGCCAGTAGCGA 730
Query 734 CATTTCTTATGGCCGTTGTTTGTGGCACGGACAAAGCAAGGTGTGACGTGTTCAT-GAAC 792
||||| | ||||| ||||| |||||||| |||||| ||||||| ||||||||| | ||||
Sbjct 731 CATTTATCATGGCAGTTGTGTGTGGCACTGACAAACCAAGGTGCGACGTGTTC-TCGAAC 789
Query 793 ATGGTGCTGGTGAGTGTTGGAGTTGTAG-TATCCTCCTATGGGGAAATTAATTTCAATGT 851
||| ||||||| |||||||||||||| | ||||||| |||||||||||| |||||||| |
Sbjct 790 ATGTTGCTGGTCAGTGTTGGAGTTGT-GATATCCTCTTATGGGGAAATTCATTTCAATAT 848
Query 852 AATCGGCACGGTCTACCAGGTCATGGGAATATTTGCTGAAGCACTTAGACTGGTGCTAAC 911
| | ||||| ||||| ||||| | || || |||||||||||||||||||||||||||||
Sbjct 849 AGTTGGCACAGTCTATCAGGTGACAGGCATCTTTGCTGAAGCACTTAGACTGGTGCTAAC 908
Query 912 TCAAGTTCTTCTTCAGAAAAAGGGCTTGACGTTGAACCC-AGTCACCAGCTTATACTATA 970
|||||||||||| ||||| ||||| ||||| |||||||| | | |||||||| || || |
Sbjct 909 TCAAGTTCTTCTCCAGAAGAAGGGTTTGACATTGAACCCTATT-ACCAGCTTGTATTACA 967
Query 971 TAGCTCCATGCAGCTTTGTTTTCCTGTCCTTGCCTTGGTATGTGCTGGAGAAACCAA-AT 1029
||||||| ||||| |||||||| ||| ||||||||||||||||| | |||||||| | |
Sbjct 968 TAGCTCCCTGCAGTTTTGTTTTTCTGGCCTTGCCTTGGTATGTGTTAGAGAAACCCACA- 1026
Query 1030 ATAGATGTCTCGCAGATCCAATTCAACTTCTGGATCTTTTTCTCAAACGCTCTCTGCGCA 1089
|| || || || ||||||||||||||||||||||| |||||||| || || || || ||
Sbjct 1027 ATGGAAGTTTCACAGATCCAATTCAACTTCTGGATATTTTTCTCCAATGCCCTATGTGCT 1086
Query 1090 CTTGCCTTAAACTTCTCCATATTCTTAGTAATCGGAAGAACAGGCGCTGTAACAATCCGG 1149
|||||||| |||||||||||||||||||||||||| |||||||| || ||||| ||||||
Sbjct 1087 CTTGCCTTGAACTTCTCCATATTCTTAGTAATCGGGAGAACAGGTGCAGTAACCATCCGG 1146
Query 1150 GTTGCTGGGGTTCTCAAAGACTGGATTCTCATAGCCCTCTCCACTGTCATATTTCCT-GA 1208
|| ||||| |||||||||||||||||||| ||||||||||| |||||||| ||||| ||
Sbjct 1147 GTGGCTGGTGTTCTCAAAGACTGGATTCTTATAGCCCTCTCAACTGTCAT-TTTCCCCGA 1205
Query 1209 GTCCACAATCACTGGGCTGAATATAACTGGATATGCTATAGCGCTCTGTGGTGTTGTAAT 1268
|||||||||||||||| ||||||| |||||||| || |||||||| |||||||| || ||
Sbjct 1206 GTCCACAATCACTGGGTTGAATATCACTGGATACGCAATAGCGCTATGTGGTGTCGTTAT 1265
Query 1269 GTACAATTACATAAAAATCAAGG-ATGTAAAAGCGAT-TCAACCAACCACTGACAGCCTC 1326
|||||||||||||||| | |||| |||| || ||| | ||||||||| ||||||| ||
Sbjct 1266 GTACAATTACATAAAAGT-AAGGGATGTGAAGGCG-TCTCAACCAACTGCTGACAGTCTT 1323
Query 1327 CCAGATCGAAT 1337
|||||||||||
Sbjct 1324 CCAGATCGAAT 1334
> Ahg923150 jgi|Araly1|923150|scaffold_104431.1
Length=190
Score = 211 bits (114), Expect = 1e-53
Identities = 172/197 (87%), Gaps = 16/197 (8%)
Strand=Plus/Plus
Query 20 ATATGC--AGAGAGCATTATATGCACACAGTAGCAAAGCTCTCTCCAAGTTTCTGACTCA 77
|||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1 ATATGCAGAGAGAGCATTATATGCACACAGTAGCAA-GCTCTCTCCCAGTTTCTGACTCA 59
Query 78 CTTCACCTGCTTCATCGATTCGCCATTGAAGC-TCTTACGCAT-TTAT-CATCGGCAAAA 134
||||||||||||||||||||||||||||| || | ||| ||| || | |||||| ||||
Sbjct 60 CTTCACCTGCTTCATCGATTCGCCATTGACGCAT-TTAT-CATCTTCTTCATCGG-AAAA 116
Query 135 CTTCTTGGAGTTATCGGAAAA-GTTTCTTCATC-A--ACGGTGGTTGAAGTATCTGATCC 190
|||||||||||||||||||| ||||| ||||| | |||||| || |||||||||||
Sbjct 117 TTTCTTGGAGTTATCGGAAAAAGTTTCGTCATCTACTACGGTG-TTC--GTATCTGATCC 173
Query 191 CTCTCGCTATGTTAAAC 207
|| ||| ||||||||||
Sbjct 174 CTTTCGTTATGTTAAAC 190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66048484830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5