BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48230.1 Length=1760 Score E Sequences producing significant alignments: (Bits) Value Ahg314258 jgi|Araly1|314258|fgenesh1_pm.C_scaffold_1003038 1762 0.0 Ahg479219 jgi|Araly1|479219|fgenesh2_kg.3__1920__AT3G17430.1 1107 0.0 Ahg923150 jgi|Araly1|923150|scaffold_104431.1 211 1e-53 > Ahg314258 jgi|Araly1|314258|fgenesh1_pm.C_scaffold_1003038 Length=1128 Score = 1762 bits (954), Expect = 0.0 Identities = 1075/1129 (95%), Gaps = 26/1129 (2%) Strand=Plus/Plus Query 376 ATGGCGAAGATGATAAACAAGACGCTTGTACTTACATATATCTACTTACTAATCTACATT 435 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1 ATGGCGAAGATGATAAACAAGACGCTTGTACTTACCTATATCTACTTACTGATCTACATT 60 Query 436 ATTCTTTCTTCTGGAGTTATAC----T----A--T-A---C---AAC-A----A--GTGG 471 ||||||||||||||||||||| | | | | | ||| | | ||| Sbjct 61 CTTCTTTCTTCTGGAGTTATACTATATAACAAGGTGATTGCGGAAACTACTTTACTTTGG 120 Query 472 GTTCTATCTCCGAAATACTTCAATTTTCCACTTCCTATAACATTGACAATGATCCATATG 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTTCTATCTCCGAAATACTTCAATTTTCCACTTCCTATAACATTGACAATGATCCATATG 180 Query 532 GGATTTTCTGGATTCGTGGCTTTCCTTCTTATTCGGGTATTCAAGGTTGTCTCTCCTGTT 591 |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| Sbjct 181 GGATTTTCTGGATTTGTGGCTTTCCTTCTTATTCGAGTTTTCAAGGTTGTCTCTCCTGTT 240 Query 592 AAAATGACTTTCGAAATATATGTGACATGTGTGGTGCCTATAAGCGCATTCTTTGCATCC 651 ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 241 AAAATGACTTTTGAAATATATGTGACCTGTGTGGTGCCTATAAGTGCATTCTTTGCATCC 300 Query 652 AGTCTCTGGTTTGGAAATACTGCATATTTGCACATTTCAGTTGCTTTCATACAGATGCTC 711 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGTCTCTGGTTTGGAAATACTGCATATTTGCACATTTCAGTTGCTTTCATACAGATGCTC 360 Query 712 AAAGCACTAATGCCGGTAGCAACATTTCTTATGGCCGTTGTTTGTGGCACGGACAAAGCA 771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AAAGCACTAATGCCGGTAGCAACATTTCTTATGGCCGTTGTTTGTGGCACGGACAAAGCA 420 Query 772 AGGTGTGACGTGTTCATGAACATGGTGCTGGTGAGTGTTGGAGTTGTAGTATCCTCCTAT 831 || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 421 AGATGTGACGTGTTCATGAACATGGTGCTGGTCAGTGTTGGAGTTGTAGTATCTTCCTAT 480 Query 832 GGGGAAATTAATTTCAATGTAATCGGCACGGTCTACCAGGTCATGGGAATATTTGCTGAA 891 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 481 GGGGAAATTAATTTCAATGTAATCGGCACGGTCTACCAGGTCATGGGAATCTTTGCTGAA 540 Query 892 GCACTTAGACTGGTGCTAACTCAAGTTCTTCTTCAGAAAAAGGGCTTGACGTTGAACCCA 951 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 541 GCACTTAGACTGGTGCTAACTCAAGTTCTTCTTCAGAAGAAGGGCTTGACATTGAACCCA 600 Query 952 GTCACCAGCTTATACTATATAGCTCCATGCAGCTTTGTTTTCCTGTCCTTGCCTTGGTAT 1011 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GTCACCAGCTTATACTATATAGCTCCATGCAGCTTTGTTTTCCTGTCCTTGCCTTGGTAT 660 Query 1012 GTGCTGGAGAAACCAAATATAGATGTCTCGCAGATCCAATTCAACTTCTGGATCTTTTTC 1071 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GTACTGGAGAAACCGAATATAGATGTCTCGCAGATCCAATTCAACTTCTGGATCTTTTTC 720 Query 1072 TCAAACGCTCTCTGCGCACTTGCCTTAAACTTCTCCATATTCTTAGTAATCGGAAGAACA 1131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TCAAACGCTCTCTGCGCACTTGCCTTAAACTTCTCCATATTCTTAGTAATCGGAAGAACA 780 Query 1132 GGCGCTGTAACAATCCGGGTTGCTGGGGTTCTCAAAGACTGGATTCTCATAGCCCTCTCC 1191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GGCGCTGTAACAATCCGGGTTGCTGGGGTTCTCAAAGACTGGATTCTCATAGCCCTCTCC 840 Query 1192 ACTGTCATATTTCCTGAGTCCACAATCACTGGGCTGAATATAACTGGATATGCTATAGCG 1251 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 841 ACTGTCATATTTCCTGAGTCCACAATCACTGGGCTGAATATTACTGGATATGCAATAGCG 900 Query 1252 CTCTGTGGTGTTGTAATGTACAATTACATAAAAATCAAGGATGTAAAAGCGATTCAACCA 1311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 CTCTGTGGTGTTGTAATGTACAATTACATAAAAATCAAGGATGTAAAAGCGATTCAACCA 960 Query 1312 ACCA-CTGACAGCCTCCCAGATCGAATCACGAAGGACTGGAAGGAGAAGAATTCGTCAGA 1370 |||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 961 ACCAGC-GACAGCCTCCCAGATCGAATCACGAAGGATTGGAAGGAGAAGAATTCTTCAGA 1019 Query 1371 TGGGGGGAGCCCCAGAGGATTGGAGCTTAACGATGAAGAAGCCCCTCTGATAACGTCGCG 1430 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1020 TGGGGGGAGCCCCAGAGGATTAGAGCTTAACGATGAAGAAGCCCCTCTGATAACATCGCG 1079 Query 1431 GTTGTCGCATATTGGCCGGACTCAGCTTGGAAACCACACGGCAGTCTGA 1479 |||||||||||| || ||||||||||||||||||||||| || |||||| Sbjct 1080 GTTGTCGCATATCGGGCGGACTCAGCTTGGAAACCACACCGCCGTCTGA 1128 > Ahg479219 jgi|Araly1|479219|fgenesh2_kg.3__1920__AT3G17430.1 Length=1659 Score = 1107 bits (599), Expect = 0.0 Identities = 850/971 (88%), Gaps = 18/971 (2%) Strand=Plus/Plus Query 376 ATGGCGAAGATGATAAACAAGACGCTTGTACTTACATATATCTACTTACTAATCTACATT 435 ||||| |||||||||||||||||||||||||| || ||||||||||| || ||||||||| Sbjct 373 ATGGCAAAGATGATAAACAAGACGCTTGTACTAACTTATATCTACTTGCTGATCTACATT 432 Query 436 ATTCTTTCTTCTGGAGTTATACTATACAACAAGTGGGTTCTATCTCCGAAATACTTCAAT 495 || |||||||||||||||||||| ||||| ||||||||| |||| || |||||||||||| Sbjct 433 ATACTTTCTTCTGGAGTTATACTGTACAATAAGTGGGTTTTATCCCCAAAATACTTCAAT 492 Query 496 TTTCCACTTCCTATAACATTGACAATGATCCATATGGGATTTTCTGGATTCGTGGCTTTC 555 ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| Sbjct 493 TTTCCACTTCCTATAACGCTGACAATGATCCATATGGGGTTTGCTGGATTCGTGGCTTTC 552 Query 556 CTTCTTATTCGGGTATTCAAGGTTGTCT-CTCCTGTTAAAATGAC-TTTCGAAATATATG 613 ||||||||||| || ||||||||||| | |||| ||||||||||| ||| |||||||||| Sbjct 553 CTTCTTATTCGCGTCTTCAAGGTTGT-TGCTCCGGTTAAAATGACATTT-GAAATATATG 610 Query 614 TGACATGTGTGGTGCCTATAAGCGCATTCTTTGCATCCAGTCTCTGGTTTGGAAATACTG 673 || |||||||| |||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 611 CAACCTGTGTGGTACCTATAAGCGCATTTTTTGCATCAAGTCTCTGGTTTGGCAATACTG 670 Query 674 CATATTTGCACATTTCAGTTGCTTTCATACAGATGCTCAAAGCACTAATGCCGGTAGCAA 733 |||||||||||||||| ||||| ||||| |||||||| ||||| |||||||| ||||| | Sbjct 671 CATATTTGCACATTTCTGTTGCCTTCATTCAGATGCTGAAAGCTCTAATGCCAGTAGCGA 730 Query 734 CATTTCTTATGGCCGTTGTTTGTGGCACGGACAAAGCAAGGTGTGACGTGTTCAT-GAAC 792 ||||| | ||||| ||||| |||||||| |||||| ||||||| ||||||||| | |||| Sbjct 731 CATTTATCATGGCAGTTGTGTGTGGCACTGACAAACCAAGGTGCGACGTGTTC-TCGAAC 789 Query 793 ATGGTGCTGGTGAGTGTTGGAGTTGTAG-TATCCTCCTATGGGGAAATTAATTTCAATGT 851 ||| ||||||| |||||||||||||| | ||||||| |||||||||||| |||||||| | Sbjct 790 ATGTTGCTGGTCAGTGTTGGAGTTGT-GATATCCTCTTATGGGGAAATTCATTTCAATAT 848 Query 852 AATCGGCACGGTCTACCAGGTCATGGGAATATTTGCTGAAGCACTTAGACTGGTGCTAAC 911 | | ||||| ||||| ||||| | || || ||||||||||||||||||||||||||||| Sbjct 849 AGTTGGCACAGTCTATCAGGTGACAGGCATCTTTGCTGAAGCACTTAGACTGGTGCTAAC 908 Query 912 TCAAGTTCTTCTTCAGAAAAAGGGCTTGACGTTGAACCC-AGTCACCAGCTTATACTATA 970 |||||||||||| ||||| ||||| ||||| |||||||| | | |||||||| || || | Sbjct 909 TCAAGTTCTTCTCCAGAAGAAGGGTTTGACATTGAACCCTATT-ACCAGCTTGTATTACA 967 Query 971 TAGCTCCATGCAGCTTTGTTTTCCTGTCCTTGCCTTGGTATGTGCTGGAGAAACCAA-AT 1029 ||||||| ||||| |||||||| ||| ||||||||||||||||| | |||||||| | | Sbjct 968 TAGCTCCCTGCAGTTTTGTTTTTCTGGCCTTGCCTTGGTATGTGTTAGAGAAACCCACA- 1026 Query 1030 ATAGATGTCTCGCAGATCCAATTCAACTTCTGGATCTTTTTCTCAAACGCTCTCTGCGCA 1089 || || || || ||||||||||||||||||||||| |||||||| || || || || || Sbjct 1027 ATGGAAGTTTCACAGATCCAATTCAACTTCTGGATATTTTTCTCCAATGCCCTATGTGCT 1086 Query 1090 CTTGCCTTAAACTTCTCCATATTCTTAGTAATCGGAAGAACAGGCGCTGTAACAATCCGG 1149 |||||||| |||||||||||||||||||||||||| |||||||| || ||||| |||||| Sbjct 1087 CTTGCCTTGAACTTCTCCATATTCTTAGTAATCGGGAGAACAGGTGCAGTAACCATCCGG 1146 Query 1150 GTTGCTGGGGTTCTCAAAGACTGGATTCTCATAGCCCTCTCCACTGTCATATTTCCT-GA 1208 || ||||| |||||||||||||||||||| ||||||||||| |||||||| ||||| || Sbjct 1147 GTGGCTGGTGTTCTCAAAGACTGGATTCTTATAGCCCTCTCAACTGTCAT-TTTCCCCGA 1205 Query 1209 GTCCACAATCACTGGGCTGAATATAACTGGATATGCTATAGCGCTCTGTGGTGTTGTAAT 1268 |||||||||||||||| ||||||| |||||||| || |||||||| |||||||| || || Sbjct 1206 GTCCACAATCACTGGGTTGAATATCACTGGATACGCAATAGCGCTATGTGGTGTCGTTAT 1265 Query 1269 GTACAATTACATAAAAATCAAGG-ATGTAAAAGCGAT-TCAACCAACCACTGACAGCCTC 1326 |||||||||||||||| | |||| |||| || ||| | ||||||||| ||||||| || Sbjct 1266 GTACAATTACATAAAAGT-AAGGGATGTGAAGGCG-TCTCAACCAACTGCTGACAGTCTT 1323 Query 1327 CCAGATCGAAT 1337 ||||||||||| Sbjct 1324 CCAGATCGAAT 1334 > Ahg923150 jgi|Araly1|923150|scaffold_104431.1 Length=190 Score = 211 bits (114), Expect = 1e-53 Identities = 172/197 (87%), Gaps = 16/197 (8%) Strand=Plus/Plus Query 20 ATATGC--AGAGAGCATTATATGCACACAGTAGCAAAGCTCTCTCCAAGTTTCTGACTCA 77 |||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 1 ATATGCAGAGAGAGCATTATATGCACACAGTAGCAA-GCTCTCTCCCAGTTTCTGACTCA 59 Query 78 CTTCACCTGCTTCATCGATTCGCCATTGAAGC-TCTTACGCAT-TTAT-CATCGGCAAAA 134 ||||||||||||||||||||||||||||| || | ||| ||| || | |||||| |||| Sbjct 60 CTTCACCTGCTTCATCGATTCGCCATTGACGCAT-TTAT-CATCTTCTTCATCGG-AAAA 116 Query 135 CTTCTTGGAGTTATCGGAAAA-GTTTCTTCATC-A--ACGGTGGTTGAAGTATCTGATCC 190 |||||||||||||||||||| ||||| ||||| | |||||| || ||||||||||| Sbjct 117 TTTCTTGGAGTTATCGGAAAAAGTTTCGTCATCTACTACGGTG-TTC--GTATCTGATCC 173 Query 191 CTCTCGCTATGTTAAAC 207 || ||| |||||||||| Sbjct 174 CTTTCGTTATGTTAAAC 190 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66048484830 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5