BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48240.1
Length=1253
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479220 jgi|Araly1|479220|fgenesh2_kg.3__1921__AT3G17440.1 928 0.0
Ahg314259 jgi|Araly1|314259|fgenesh1_pm.C_scaffold_1003039 902 0.0
> Ahg479220 jgi|Araly1|479220|fgenesh2_kg.3__1921__AT3G17440.1
Length=1170
Score = 928 bits (502), Expect = 0.0
Identities = 711/812 (88%), Gaps = 14/812 (2%)
Strand=Plus/Plus
Query 230 TCCGGCAGATATGGCGTCTGAAT-TGCCGATGAGCCCTCATTTGGAGCAGATTCACGGAG 288
|||||| |||||||| || ||| | || ||||||||||| || |||||||| || || |
Sbjct 20 TCCGGC-GATATGGCTTC-AAATCTTCCTATGAGCCCTCAATTAGAGCAGATCCATGGCG 77
Query 289 AAATCCGTGACCATTTCCGAGCCCTCGCGAATGGCTTCCAGAGGTTGGATAAGATCAAGG 348
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 78 AAATCCGTGACCATTTCCGAGCCCTCGCGAATGGTTTCCAGAGGTTGGATAAGATCAAGG 137
Query 349 ATTCTAGTAGACAAAGCAAGCAACTCGAAGAACTTGCTGAGAAGATGAGAGACTGTAAAA 408
|||| | |||||||||||| ||||| ||||||||| |||||||||||||||| |||||||
Sbjct 138 ATTCAACTAGACAAAGCAAACAACTTGAAGAACTTACTGAGAAGATGAGAGAATGTAAAA 197
Query 409 GGTTGGTTAAGGAGTTTGATCGTGAACTCAAAGATGGGGAAGCTCGAAATTCTCCTCAAG 468
||||||| |||||||| || ||||||||||| |||| ||||||| ||||||||||| |||
Sbjct 198 GGTTGGTCAAGGAGTTCGACCGTGAACTCAAGGATGAGGAAGCTAGAAATTCTCCTGAAG 257
Query 469 TAAATAAGCAATTGAATGATGAGAAACAATCTATGATTAAGGAACTCAACTCTTATGTTG 528
|||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct 258 TAAATAAGCAATTGAACGATGAGAAACAATCTATGATCAAGGAGCTCAATTCTTACGTTG 317
Query 529 CACTAAGAAAAACGTACT-TGAATACACTCGGCAACAAGAAAGTTGAACTTTTTGATACT 587
|||||||||||||||| | ||| ||| || ||||||||||||||||| ||||| |||| |
Sbjct 318 CACTAAGAAAAACGTA-TATGAGTACCCTTGGCAACAAGAAAGTTGAGCTTTTCGATA-T 375
Query 588 GG-AGCTGGAGTCAGCGGTGAACCCACAGCTGAAGAAAACGTCCAAATGGCTTCAACAAT 646
|| ||||||||| || || ||||| |||||||| ||||| || ||| |||||||| | ||
Sbjct 376 GGGAGCTGGAGTTAGTGGCGAACCTACAGCTGAGGAAAATGTTCAAGTGGCTTCATCTAT 435
Query 647 GTCAAACCAAGAGCTTGTCGATGCTGGAATGAAAAGGATGGACGAGACTGACCAGGCTAT 706
||||||||| |||||||| ||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct 436 GTCAAACCAGGAGCTTGTTGATGCTGGAATGAAAAGAATGGATGAGACTGATCAGGCCAT 495
Query 707 TGAACGTTCTAAACAGGTTGT-GCATCAGACACTCGAAGTTGGCACTCAAACTGCATCTA 765
||| || || ||||||||||| | | || |||||||||||||| |||||||||||| |||
Sbjct 496 TGAGCGCTCAAAACAGGTTGTAGAA-CAAACACTCGAAGTTGGAACTCAAACTGCAGCTA 554
Query 766 ACTTAAAGGGACAGACGGATCAAATGGGCCGCGTTGTAAACGACCTAGACACAATTCAGT 825
| |||||||||||||||||||||||||| |||||||| ||| || | ||||| ||||| |
Sbjct 555 ATTTAAAGGGACAGACGGATCAAATGGGACGCGTTGTTAACCACTTGGACACTATTCAAT 614
Query 826 TCTCTCTTAAGAAAGCTTCGCAGCTGGTGAAAGAGATAGGAAGACAGGTAGCTACAGATA 885
|||| | |||||||| || |||||||||||||||||||| |||||||| ||||| ||||
Sbjct 615 TCTCAATCAAGAAAGCCTCCCAGCTGGTGAAAGAGATAGGGAGACAGGTGGCTACCGATA 674
Query 886 AATGCATAATGGCGTTCCTGTTTCTGATTGTCTGTGGTGTTA-TAGCTATAATCATTGTG 944
|||||||||||| |||||||||||| ||||| |||||||| | |||| || ||||| |||
Sbjct 675 AATGCATAATGGGGTTCCTGTTTCTCATTGTATGTGGTGT-AGTAGCCATTATCATAGTG 733
Query 945 AAGATCGTGAACCCAAACAACAAAGACATCAGAGACATCCCTGGACTAGCTCCTCCAGCG 1004
||||||||||| || || ||||||||||| || |||||||| ||| ||||||||||||||
Sbjct 734 AAGATCGTGAATCCGAATAACAAAGACATTAGGGACATCCCAGGATTAGCTCCTCCAGCG 793
Query 1005 CAATCGAG-AAAGCTCTTGTACTTCAGAGAAT 1035
|||||||| ||| || |||||||| || ||||
Sbjct 794 CAATCGAGGAAA-CTGTTGTACTTGAG-GAAT 823
> Ahg314259 jgi|Araly1|314259|fgenesh1_pm.C_scaffold_1003039
Length=858
Score = 902 bits (488), Expect = 0.0
Identities = 522/538 (97%), Gaps = 4/538 (1%)
Strand=Plus/Plus
Query 502 TGATTAAGGAACTCAACTCTTATGTTGCACTAAGAAAAACGTACTTGAATACACTCGGCA 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 TGATTAAGGAACTCAACTCTTATGTTGCACTAAGAAAAACGTACTTGAATACACTCGGCA 382
Query 562 ACAAGAAAGTTGAACTTTTTGATACTGG-AGCTGGAGTCAGCGGTGAACCCACAGCTGAA 620
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 383 ACAAGAAAGTTGAACTTTTTGATA-TGGGAGCTGGAGTCAGCGGTGAACCCACAGCTGAA 441
Query 621 GAAAACGTCCAAATGGCTTCAACAATGTCAAACCAAGAGCTTGTCGATGCTGGAATGAAA 680
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 442 GAAAACGTCCAAATGGCTTCATCAATGTCAAACCAAGAGCTTGTCGATGCTGGAATGAAA 501
Query 681 AGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAGGTTGTGCATCAGAC-ACT 739
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 502 AGGATGGACGAGACTGACCAGGCTATTGAACGCTCTAAACAGGTTGTGCATCAGACGA-T 560
Query 740 CGAAGTTGGCACTCAAACTGCATCTAACTTAAAGGGACAGACGGATCAAATGGGCCGCGT 799
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 561 CGAAGTTGGCACTCAAACTGCATCTAATTTAAAGGGACAGACAGATCAAATGGGTCGCGT 620
Query 800 TGTAAACGACCTAGACACAATTCAGTTCTCTCTTAAGAAAGCTTCGCAGCTGGTGAAAGA 859
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 621 TGTAAACGACCTAGACACAATTCAGTTCTCTATCAAGAAAGCTTCGCAGCTGGTGAAAGA 680
Query 860 GATAGGAAGACAGGTAGCTACAGATAAATGCATAATGGCGTTCCTGTTTCTGATTGTCTG 919
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 681 GATAGGAAGACAGGTGGCTACTGATAAATGCATAATGGCGTTCCTGTTTCTGATTGTATG 740
Query 920 TGGTGTTATAGCTATAATCATTGTGAAGATCGTGAACCCAAACAACAAAGACATCAGAGA 979
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGGTGTTATAGCTATAATCGTTGTGAAGATCGTGAACCCAAACAACAAAGACATCAGAGA 800
Query 980 CATCCCTGGACTAGCTCCTCCAGCGCAATCGAGAAAGCTCTTGTACTTCAGAGAATAG 1037
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 801 CATCCCTGGACTAGCTCCTCCAGCGCAATCAAGAAAGCTCTTGTACTTCAGAGAATAG 858
Score = 455 bits (246), Expect = 4e-127
Identities = 258/264 (98%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 240 ATGGCGTCTGAATTGCCGATGAGCCCTCATTTGGAGCAGATTCACGGAGAAATCCGTGAC 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCTGACTTGCCGATGAGCCCTCATTTGGAGCAGATTCACGGAGAAATCCGTGAC 60
Query 300 CATTTCCGAGCCCTCGCGAATGGCTTCCAGAGGTTGGATAAGATCAAGGATTCTAGTAGA 359
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 61 CATTTCCGAGCCCTCGCAAATGGCTTTCAGAGGTTGGATAAGATCAAGGATTCTAATAGA 120
Query 360 CAAAGCAAGCAACTCGAAGAACTTGCTGAGAAGATGAGAGACTGTAAAAGGTTGGTTAAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAAGCAAGCAACTCGAAGAACTTGCTGAGAAGATGAGAGACTGTAAAAGGTTGGTTAAG 180
Query 420 GAGTTTGATCGTGAACTCAAAGATGGGGAAGCTCGAAATTCTCCTCAAGTAAATAAGCAA 479
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 GAGTTTGATCGTGAACTCAAAGATGGGGAAGCTCGAAATTCTCCTGAAGTAAATAAGCAG 240
Query 480 TTGAATGATGAGAAACAATCTATG 503
||||||||||||||||||||||||
Sbjct 241 TTGAATGATGAGAAACAATCTATG 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46814942076
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5