BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48260.1
Length=1606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923153 jgi|Araly1|923153|scaffold_104434.1 1925 0.0
Ahg479227 jgi|Araly1|479227|fgenesh2_kg.3__1928__AT3G17510.1 881 0.0
> Ahg923153 jgi|Araly1|923153|scaffold_104434.1
Length=1324
Score = 1925 bits (1042), Expect = 0.0
Identities = 1247/1343 (93%), Gaps = 26/1343 (2%)
Strand=Plus/Plus
Query 39 ATCCGGAAGTCTAAATTGGATGGTGATAAAGGGAATGCGTGTTGGTAAGTACGAGCTTGG 98
|||||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 3 ATCCGGAA-TCTGAATTGGATGGTGATAAAGGGAATGCTTGTTGGTAAATACGAGCTTGG 61
Query 99 GAGGACACTCGGAGAGGGAAATTCCGCAAAAGTTAAATTTGCTATAGATACTCTTACCGG 158
||||||||| |||||||||||||||||||| |||||||| |||||||||||| || ||||
Sbjct 62 GAGGACACTTGGAGAGGGAAATTCCGCAAAGGTTAAATTCGCTATAGATACTATTTCCGG 121
Query 159 CGAATCATTCGCCATCAAAATCATCGAGAAGTCGTGTATCACACGTCTTAACGTCTCTTT 218
|||| |||||||||||||||||||||| |||||| ||||||| ||| |||||||||||||
Sbjct 122 CGAACCATTCGCCATCAAAATCATCGATAAGTCGCGTATCACTCGTATTAACGTCTCTTT 181
Query 219 TCAGATTAAGAGAGAGATTCGAACACTCAAAGTTTTGAAGCATCCAAACATTGTCCGATT 278
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 182 TCAGATCAAGAGAGAGATTCGAACACTCAAAGTTTTAAAGCATCCAAACATTGTCAGATT 241
Query 279 ACATGAGGTCTTGGCTAGCAAAACCAAGATTTACATGGTTCTGGAATGTGTCACTGGAGG 338
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 242 ACATGAGGTCTTGGCAAGCAAAACCAAGATTTACATGGTTCTGGAATGTGTCACTGGGGG 301
Query 339 AGACTTATTTGACAGAATTGTCTCGAAAGGAAAGCTTTCGGAAACACAAGGACGAAAAAT 398
|||||||||||||||||||||||| |||||||||||||| |||||| | |||| ||||||
Sbjct 302 AGACTTATTTGACAGAATTGTCTCCAAAGGAAAGCTTTCTGAAACAGAGGGACTAAAAAT 361
Query 399 GTTTCAGCAGTTGATTGATGGAGTCAGCTATTGTCATAACAAGGGCGTTTTTCACAGGGA 458
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||
Sbjct 362 GTTTCAGCAGTTGATTGATGGAATCAGCTATTGTCATAACAAGGGAGTTTTTCACAGAGA 421
Query 459 TCTCAAGCTAGAGAATGTTCTTCTTGATGCAAAGGGTCACATTAAGATCACTGATTTTGG 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TCTCAAGCTAGAGAATGTTCTTCTTGATGCAAAGGGTCACATTAAGATCACTGATTTTGG 481
Query 519 CCTTAGTGCTCTGTCTCAACATTATAGGGAAGATGGGTTGCTACATACAACTTGTGGTAG 578
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 482 CCTTAGTGCTCTGCCTCAACATTTTAGGGAAGATGGGTTGCTACATACAACTTGTGGTAG 541
Query 579 TCCTAACTATGTCGCGCCTGAGGTTCTAGCTAA-TGAGGGCTATGATGGTGCAGCATCAG 637
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 542 TCCTAACTATGTCGCGCCTGAGGTTCTAGCTAACAAAGGG-TATGATGGTGCAGCATCAG 600
Query 638 ATATATGGTCATGTGGAGTAATCTTGTATGTTATTCTTACGGGATGTCTCCCTTTTGATG 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATATATGGTCATGTGGAGTAATCTTGTATGTTATTCTTACGGGATGTCTCCCTTTTGATG 660
Query 698 ATGCAAACCTTGCAGTTATTTGCCGGAAGATATTCAAAGGGGATCCCCCAATACCTAGAT 757
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGCTAACCTTGCAGTTATTTGCCGGAAGATATTCAAAGGGGATCCCCCAATACCTAGAT 720
Query 758 GGATATCAC-TGGGAGCTAAAACTATGATCAAGAGAATGCTTGATCCTAA-TCCAGTCAC 815
||||||||| ||| |||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 721 GGATATCACCTGGT-GCTAAAACCATGATCAAGAGAATGCTTGATCC-AAGTCCAGTCAC 778
Query 816 GAGGGTGACAATCGCAGGTATAAAGGCTCATGATTGGTTTAAACATGACTACACTCCTTC 875
|||| ||||||||||| ||| |||||| |||||||||| ||||||||||||||||||||
Sbjct 779 GAGGATGACAATCGCAAATATTAAGGCTAATGATTGGTTCAAACATGACTACACTCCTTC 838
Query 876 AAACTACGATGACGACGATGATGTATACTTGATCCAAGAAGATGTTTTTATGATGAAGGA 935
||| |||||||| || ||||||| |||||| ||||||||||||| || ||||| |
Sbjct 839 AAAATACGATGATGATGATGATGCATACTTAATCCAAGAAGATGG----ATC-TGAAG-A 892
Query 936 ATATGAAGAAGAGAAGAGCCCTGATTCTCCAACCATTATCAACGCTTTTCAGTTGATTGG 995
| ||| ||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 893 A---GAA-AAGAG-----CCCTGATTCTCCAACCATTATCAACGCATTTAAGTTGATTGG 943
Query 996 AATGTCCTCGTTTCTCGACCTCTCAGGTTTCTTTGAGACAGAGAAATTATCAGAGAGGCA 1055
|||||| || |||||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 944 AATGTCATCATTTCTCGACCTCTCAGGTTTCTTTGAGAAAGAGAAAGTATCAGAGAGACA 1003
Query 1056 GATAAGATTCACGTCAAATAGTTTAGCTAAAGATTTGTTGGAGAACATCGAAACGAT-TT 1114
||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||| ||
Sbjct 1004 GATAAGATTCACGTCAAATAGCTTAGCCATAGATTTGTTGGAGAAAATCGAAACGATCTT 1063
Query 1115 TCACGGAGATGGGCTTT-TGTTTACAGAAGAAACATGCAAAGTTAAAAGCAATCAAAGAA 1173
| || |||||||| ||| || |||||||||||||| |||| |||||||||||||||||||
Sbjct 1064 T-ACAGAGATGGG-TTTCTGCTTACAGAAGAAACACGCAAGGTTAAAAGCAATCAAAGAA 1121
Query 1174 GAAAGCACTCAAAAAAGGCAATGCGGTTTATCGGTAACGGCTGAGGTTTTCGAGATAAGT 1233
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1122 GAAAGCACTCAAAAAGGGCAATGCGGTTTATCAGTAACGGCTGAGGTTTTCGAGATAAGT 1181
Query 1234 CCGTCCCTGAATGTGGTTGAACTAAGAAAATCACATGGCGATTCGTCTCTATATAAACAG 1293
|||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1182 CCGTCCCTAAATGTGGTTGAACTAAGAAAATCACATGGTGATTTGTCTCTATATAAACAG 1241
Query 1294 TTGTACGAGCGATTATTGAATGAGCTGGGCTCATCATCACAAGTACAGGAGCTTTTAGCG 1353
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1242 TTGTACGAGAGATTATTGAATGAACTGGGCTCATCATCACAAGTACAGGAGCTTTTAACG 1301
Query 1354 TAGCCAATAGCAGAAATTATGTC 1376
|||||||||||||||| ||||||
Sbjct 1302 TAGCCAATAGCAGAAAATATGTC 1324
> Ahg479227 jgi|Araly1|479227|fgenesh2_kg.3__1928__AT3G17510.1
Length=1795
Score = 881 bits (477), Expect = 0.0
Identities = 1039/1303 (80%), Gaps = 67/1303 (5%)
Strand=Plus/Plus
Query 67 AAGGGAATGCGTGTTGGTAAGTACGAGCTTGGGAGGACACTCGGAGAGGGAAATTCCGCA 126
|||||||||||| | ||||| ||||||||||| ||||| ||||| ||||| |||| ||
Sbjct 279 AAGGGAATGCGTCTGGGTAAATACGAGCTTGGTAGGACGCTCGGCGAGGGTAATTTCGGT 338
Query 127 AAAGTTAAATTTGCTATAGATA-C-TCTTACCGG-CGAATCATTCGCCATCAAAATCATC 183
||||||||||| |||| ||||| | || | |||| | |||| |||| | ||||| |||
Sbjct 339 AAAGTTAAATTCGCTAGAGATACCGTC-T-CCGGTC-AATCCGTCGCTGTTAAAATTATC 395
Query 184 GAGAAGTCGT-GTATCACACG-TCTTAACGTCTCTTTTCA-----G-ATTAAGAGAGAGA 235
|| ||||| | ||||| | || ||| ||| |||| || || | || || |||||||
Sbjct 396 GACAAGTC-TCGTATCGC-CGATCTCAACTTCTCCTTACAGGTTTGCATAAAAAGAGAGA 453
Query 236 TTCGAACACTCAAAGTTTTGAAGCATCCAAACATTGTCCGATTACATGAGGTCTTGGCTA 295
| || || || ||| | ||||||||||| ||||||| ||||||||||||| |||||||
Sbjct 454 TCCGGACTCTGAAAATGTTGAAGCATCCCCACATTGTTAGATTACATGAGGTATTGGCTA 513
Query 296 GCAAAACCAAGATTTACATGGTTCTGGAA-TGTGTCACTGGAGGAGACTTATTTGACAGA 354
||||||| || ||| | ||||| ||||| | ||| || |||||||| || || ||||||
Sbjct 514 GCAAAACGAAAATTAATATGGTAATGGAACT-TGTTACCGGAGGAGAATTGTTCGACAGA 572
Query 355 ATTGTCTCGAAAGGAAAGCTT-TCGGAAACACAAGGACGAAAAATGTTTCAGCAGTTGAT 413
||||| || || ||||| || | ||||| | ||| ||||||||||||||||| ||||
Sbjct 573 ATTGTTTCCAACGGAAA-ATTAACAGAAACTGATGGAAGAAAAATGTTTCAGCAGCTGAT 631
Query 414 TGATGGAGTCAGCTATTGTCATAACAAGGGCGTTTTTCACAGGGATCTCAAGCTAGAGAA 473
||||||| ||||||| ||||| | ||| || ||||| ||| |||||||||||||||||||
Sbjct 632 TGATGGAATCAGCTACTGTCACAGCAAAGGTGTTTTCCACCGGGATCTCAAGCTAGAGAA 691
Query 474 TGTTCTTCTTGATGCAAAGGGTCACATTAAGATCACTGATTTTGGCCTTAGTGCTCTGTC 533
||||||||||||||||||||| || || |||||||||||||||||||| ||||| ||| |
Sbjct 692 TGTTCTTCTTGATGCAAAGGGACATATAAAGATCACTGATTTTGGCCTCAGTGCCCTGCC 751
Query 534 TCAACATTATAGGGAAGATGGGTTGCTACATACAACTTGTGGTAGTCCTAACTATGTCGC 593
||| |||| |||||| || || ||| | |||||||| ||||| |||||||| || || ||
Sbjct 752 TCAGCATTTTAGGGATGACGGATTGTTGCATACAACCTGTGGAAGTCCTAATTACGTTGC 811
Query 594 GCCTGAGGTTCTAGCTAAT-GAGGGCTATGATGGTGCAGCATCAGATATATGGTCATGTG 652
|||||||||| |||| || |||| || ||||||||||| |||||||||||||| ||||
Sbjct 812 GCCTGAGGTTTTAGCCAACAGAGGT-TACGATGGTGCAGCGTCAGATATATGGTCGTGTG 870
Query 653 GAGTAATCTTGTATGTTATTCTTACGGGATGTCTCCCTTTTGATGAT-GCAAACCTTGCA 711
| |||||||||||||| ||||| || |||||||| |||||||| ||| | |||||||| |
Sbjct 871 GTGTAATCTTGTATGTGATTCTAACCGGATGTCTTCCTTTTGACGATAG-AAACCTTGTA 929
Query 712 GTTATTTGCCGGAAGATATTCAAAGGGGATCCC-CCAATACCTAGATGGATATCACTGGG 770
||| ||| || |||||||| |||||| || ||| |||||||| |||||| |||||| ||
Sbjct 930 GTTCTTTACCAGAAGATATGCAAAGGAGA-CCCACCAATACCAAGATGGTTATCACCAGG 988
Query 771 AGCTAA-AACTATGATCAAGAGAATGCTTGATCCTAATCCAGTCACGAGGGTGACAATCG 829
|| || ||| ||||| ||||||||||| ||||| ||||||||||| ||| | ||| |||
Sbjct 989 TGC-AAGAACCATGATTAAGAGAATGCTCGATCCAAATCCAGTCACCAGGATCACAGTCG 1047
Query 830 CAGGTAT-AAAGGCTCAT-GATTGGTTTAAACATGACTACACTCCTTCAAACTAC-GATG 886
||||| |||| | || || ||||| ||||| || || | |||||||| | | ||||
Sbjct 1048 TGGGTATTAAAG-C-CAGCGAGTGGTTCAAACACGAGTATATTCCTTCAAT-TCCCGATG 1104
Query 887 ACGACGATGATGTATAC-TTGATC-CA-A-GAAGATGTTTT-T-A-TG-ATGAA---GGA 935
| || || || | | | |||| | || | || |||| ||| | | | | ||| |||
Sbjct 1105 ATGATGACGAAGAAGAAGTTGA-CACAGACGATGATGCTTTCTCAATCCAAGAACTCGGA 1163
Query 936 AT-ATGAAGAAGAGAAGAGCCCTGATTCTCCAACCATTATCAACGCTTTTCAGTTGATTG 994
| | ||||||| |||| || |||||| ||||| || ||||| || |||||||| || |
Sbjct 1164 -TCA-GAAGAAGGGAAGGGCAGTGATTCACCAACGATCATCAATGCGTTTCAGTTAATCG 1221
Query 995 GAATGTCCTCGTTTCTCGACCTCTCAGGTTTCTTTGAGACA-GAGAAAT-TATCAGAGAG 1052
||||||| || ||||| ||||| || ||||||||||| ||| ||||| | ||||||||||
Sbjct 1222 GAATGTCTTCCTTTCTTGACCTGTCCGGTTTCTTTGA-ACAAGAGAA-TGTATCAGAGAG 1279
Query 1053 GCAGA-TAAGATTCACGTCAAATAGTTTAGCTAAAGATTTGTTGGAGAACATCGAAAC-G 1110
| ||| |||||||||| |||||||| | || |||||||| | ||||| |||||||| |
Sbjct 1280 G-AGAATAAGATTCACTTCAAATAGCTCCGCAAAAGATTTACTCGAGAAAATCGAAACAG 1338
Query 1111 ATTTTCACGGAGATGGGCTTTTGTTTACAGAAGAAACATGCAAAGTTAAAAGCAAT-CAA 1169
|| || |||||||| || || |||| ||||||||||| |||||||||| || |||
Sbjct 1339 CCGTT-ACAGAGATGGGATTCAGTGTACAAAAGAAACATGCGAAGTTAAAAGTAAAACAA 1397
Query 1170 AGAAGAAAGCA-CTCAAAAAAGG-CAA-TGCGGTTTATCGGTAACGGCTGAGGTTTTCGA 1226
|||||||| | | || ||| || ||| | |||||||| ||||| ||||||||||||||
Sbjct 1398 -GAAGAAAGAAAC-CAGAAA-GGTCAAGTT-GGTTTATCAGTAACAGCTGAGGTTTTCGA 1453
Query 1227 GATAAGTCCGTCCCTGAATGTGGTTGAACTAAGAAAATCACATGGCGATTCGTCTCTATA 1286
||||| ||||| ||||| |||||||| ||||||||||| |||||||||| | | ||||
Sbjct 1454 GATAAAACCGTCACTGAACGTGGTTGAGCTAAGAAAATCTTATGGCGATTCATGTTTATA 1513
Query 1287 TAAACAGTTGTACGAGCGATTATTGAATGA-GCTGGGCTCATC 1328
|| ||||||||||||| || |||| || || | ||||| ||||
Sbjct 1514 TAGACAGTTGTACGAGAGACTATTAAAAGACG-TGGGCACATC 1555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60182587100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5