BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48260.1 Length=1606 Score E Sequences producing significant alignments: (Bits) Value Ahg923153 jgi|Araly1|923153|scaffold_104434.1 1925 0.0 Ahg479227 jgi|Araly1|479227|fgenesh2_kg.3__1928__AT3G17510.1 881 0.0 > Ahg923153 jgi|Araly1|923153|scaffold_104434.1 Length=1324 Score = 1925 bits (1042), Expect = 0.0 Identities = 1247/1343 (93%), Gaps = 26/1343 (2%) Strand=Plus/Plus Query 39 ATCCGGAAGTCTAAATTGGATGGTGATAAAGGGAATGCGTGTTGGTAAGTACGAGCTTGG 98 |||||||| ||| ||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 3 ATCCGGAA-TCTGAATTGGATGGTGATAAAGGGAATGCTTGTTGGTAAATACGAGCTTGG 61 Query 99 GAGGACACTCGGAGAGGGAAATTCCGCAAAAGTTAAATTTGCTATAGATACTCTTACCGG 158 ||||||||| |||||||||||||||||||| |||||||| |||||||||||| || |||| Sbjct 62 GAGGACACTTGGAGAGGGAAATTCCGCAAAGGTTAAATTCGCTATAGATACTATTTCCGG 121 Query 159 CGAATCATTCGCCATCAAAATCATCGAGAAGTCGTGTATCACACGTCTTAACGTCTCTTT 218 |||| |||||||||||||||||||||| |||||| ||||||| ||| ||||||||||||| Sbjct 122 CGAACCATTCGCCATCAAAATCATCGATAAGTCGCGTATCACTCGTATTAACGTCTCTTT 181 Query 219 TCAGATTAAGAGAGAGATTCGAACACTCAAAGTTTTGAAGCATCCAAACATTGTCCGATT 278 |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 182 TCAGATCAAGAGAGAGATTCGAACACTCAAAGTTTTAAAGCATCCAAACATTGTCAGATT 241 Query 279 ACATGAGGTCTTGGCTAGCAAAACCAAGATTTACATGGTTCTGGAATGTGTCACTGGAGG 338 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 242 ACATGAGGTCTTGGCAAGCAAAACCAAGATTTACATGGTTCTGGAATGTGTCACTGGGGG 301 Query 339 AGACTTATTTGACAGAATTGTCTCGAAAGGAAAGCTTTCGGAAACACAAGGACGAAAAAT 398 |||||||||||||||||||||||| |||||||||||||| |||||| | |||| |||||| Sbjct 302 AGACTTATTTGACAGAATTGTCTCCAAAGGAAAGCTTTCTGAAACAGAGGGACTAAAAAT 361 Query 399 GTTTCAGCAGTTGATTGATGGAGTCAGCTATTGTCATAACAAGGGCGTTTTTCACAGGGA 458 |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || Sbjct 362 GTTTCAGCAGTTGATTGATGGAATCAGCTATTGTCATAACAAGGGAGTTTTTCACAGAGA 421 Query 459 TCTCAAGCTAGAGAATGTTCTTCTTGATGCAAAGGGTCACATTAAGATCACTGATTTTGG 518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 TCTCAAGCTAGAGAATGTTCTTCTTGATGCAAAGGGTCACATTAAGATCACTGATTTTGG 481 Query 519 CCTTAGTGCTCTGTCTCAACATTATAGGGAAGATGGGTTGCTACATACAACTTGTGGTAG 578 ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 482 CCTTAGTGCTCTGCCTCAACATTTTAGGGAAGATGGGTTGCTACATACAACTTGTGGTAG 541 Query 579 TCCTAACTATGTCGCGCCTGAGGTTCTAGCTAA-TGAGGGCTATGATGGTGCAGCATCAG 637 ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 542 TCCTAACTATGTCGCGCCTGAGGTTCTAGCTAACAAAGGG-TATGATGGTGCAGCATCAG 600 Query 638 ATATATGGTCATGTGGAGTAATCTTGTATGTTATTCTTACGGGATGTCTCCCTTTTGATG 697 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 ATATATGGTCATGTGGAGTAATCTTGTATGTTATTCTTACGGGATGTCTCCCTTTTGATG 660 Query 698 ATGCAAACCTTGCAGTTATTTGCCGGAAGATATTCAAAGGGGATCCCCCAATACCTAGAT 757 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ATGCTAACCTTGCAGTTATTTGCCGGAAGATATTCAAAGGGGATCCCCCAATACCTAGAT 720 Query 758 GGATATCAC-TGGGAGCTAAAACTATGATCAAGAGAATGCTTGATCCTAA-TCCAGTCAC 815 ||||||||| ||| |||||||| ||||||||||||||||||||||| || ||||||||| Sbjct 721 GGATATCACCTGGT-GCTAAAACCATGATCAAGAGAATGCTTGATCC-AAGTCCAGTCAC 778 Query 816 GAGGGTGACAATCGCAGGTATAAAGGCTCATGATTGGTTTAAACATGACTACACTCCTTC 875 |||| ||||||||||| ||| |||||| |||||||||| |||||||||||||||||||| Sbjct 779 GAGGATGACAATCGCAAATATTAAGGCTAATGATTGGTTCAAACATGACTACACTCCTTC 838 Query 876 AAACTACGATGACGACGATGATGTATACTTGATCCAAGAAGATGTTTTTATGATGAAGGA 935 ||| |||||||| || ||||||| |||||| ||||||||||||| || ||||| | Sbjct 839 AAAATACGATGATGATGATGATGCATACTTAATCCAAGAAGATGG----ATC-TGAAG-A 892 Query 936 ATATGAAGAAGAGAAGAGCCCTGATTCTCCAACCATTATCAACGCTTTTCAGTTGATTGG 995 | ||| ||||| ||||||||||||||||||||||||||| ||| |||||||||| Sbjct 893 A---GAA-AAGAG-----CCCTGATTCTCCAACCATTATCAACGCATTTAAGTTGATTGG 943 Query 996 AATGTCCTCGTTTCTCGACCTCTCAGGTTTCTTTGAGACAGAGAAATTATCAGAGAGGCA 1055 |||||| || |||||||||||||||||||||||||||| ||||||| |||||||||| || Sbjct 944 AATGTCATCATTTCTCGACCTCTCAGGTTTCTTTGAGAAAGAGAAAGTATCAGAGAGACA 1003 Query 1056 GATAAGATTCACGTCAAATAGTTTAGCTAAAGATTTGTTGGAGAACATCGAAACGAT-TT 1114 ||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||| || Sbjct 1004 GATAAGATTCACGTCAAATAGCTTAGCCATAGATTTGTTGGAGAAAATCGAAACGATCTT 1063 Query 1115 TCACGGAGATGGGCTTT-TGTTTACAGAAGAAACATGCAAAGTTAAAAGCAATCAAAGAA 1173 | || |||||||| ||| || |||||||||||||| |||| ||||||||||||||||||| Sbjct 1064 T-ACAGAGATGGG-TTTCTGCTTACAGAAGAAACACGCAAGGTTAAAAGCAATCAAAGAA 1121 Query 1174 GAAAGCACTCAAAAAAGGCAATGCGGTTTATCGGTAACGGCTGAGGTTTTCGAGATAAGT 1233 ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1122 GAAAGCACTCAAAAAGGGCAATGCGGTTTATCAGTAACGGCTGAGGTTTTCGAGATAAGT 1181 Query 1234 CCGTCCCTGAATGTGGTTGAACTAAGAAAATCACATGGCGATTCGTCTCTATATAAACAG 1293 |||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 1182 CCGTCCCTAAATGTGGTTGAACTAAGAAAATCACATGGTGATTTGTCTCTATATAAACAG 1241 Query 1294 TTGTACGAGCGATTATTGAATGAGCTGGGCTCATCATCACAAGTACAGGAGCTTTTAGCG 1353 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 1242 TTGTACGAGAGATTATTGAATGAACTGGGCTCATCATCACAAGTACAGGAGCTTTTAACG 1301 Query 1354 TAGCCAATAGCAGAAATTATGTC 1376 |||||||||||||||| |||||| Sbjct 1302 TAGCCAATAGCAGAAAATATGTC 1324 > Ahg479227 jgi|Araly1|479227|fgenesh2_kg.3__1928__AT3G17510.1 Length=1795 Score = 881 bits (477), Expect = 0.0 Identities = 1039/1303 (80%), Gaps = 67/1303 (5%) Strand=Plus/Plus Query 67 AAGGGAATGCGTGTTGGTAAGTACGAGCTTGGGAGGACACTCGGAGAGGGAAATTCCGCA 126 |||||||||||| | ||||| ||||||||||| ||||| ||||| ||||| |||| || Sbjct 279 AAGGGAATGCGTCTGGGTAAATACGAGCTTGGTAGGACGCTCGGCGAGGGTAATTTCGGT 338 Query 127 AAAGTTAAATTTGCTATAGATA-C-TCTTACCGG-CGAATCATTCGCCATCAAAATCATC 183 ||||||||||| |||| ||||| | || | |||| | |||| |||| | ||||| ||| Sbjct 339 AAAGTTAAATTCGCTAGAGATACCGTC-T-CCGGTC-AATCCGTCGCTGTTAAAATTATC 395 Query 184 GAGAAGTCGT-GTATCACACG-TCTTAACGTCTCTTTTCA-----G-ATTAAGAGAGAGA 235 || ||||| | ||||| | || ||| ||| |||| || || | || || ||||||| Sbjct 396 GACAAGTC-TCGTATCGC-CGATCTCAACTTCTCCTTACAGGTTTGCATAAAAAGAGAGA 453 Query 236 TTCGAACACTCAAAGTTTTGAAGCATCCAAACATTGTCCGATTACATGAGGTCTTGGCTA 295 | || || || ||| | ||||||||||| ||||||| ||||||||||||| ||||||| Sbjct 454 TCCGGACTCTGAAAATGTTGAAGCATCCCCACATTGTTAGATTACATGAGGTATTGGCTA 513 Query 296 GCAAAACCAAGATTTACATGGTTCTGGAA-TGTGTCACTGGAGGAGACTTATTTGACAGA 354 ||||||| || ||| | ||||| ||||| | ||| || |||||||| || || |||||| Sbjct 514 GCAAAACGAAAATTAATATGGTAATGGAACT-TGTTACCGGAGGAGAATTGTTCGACAGA 572 Query 355 ATTGTCTCGAAAGGAAAGCTT-TCGGAAACACAAGGACGAAAAATGTTTCAGCAGTTGAT 413 ||||| || || ||||| || | ||||| | ||| ||||||||||||||||| |||| Sbjct 573 ATTGTTTCCAACGGAAA-ATTAACAGAAACTGATGGAAGAAAAATGTTTCAGCAGCTGAT 631 Query 414 TGATGGAGTCAGCTATTGTCATAACAAGGGCGTTTTTCACAGGGATCTCAAGCTAGAGAA 473 ||||||| ||||||| ||||| | ||| || ||||| ||| ||||||||||||||||||| Sbjct 632 TGATGGAATCAGCTACTGTCACAGCAAAGGTGTTTTCCACCGGGATCTCAAGCTAGAGAA 691 Query 474 TGTTCTTCTTGATGCAAAGGGTCACATTAAGATCACTGATTTTGGCCTTAGTGCTCTGTC 533 ||||||||||||||||||||| || || |||||||||||||||||||| ||||| ||| | Sbjct 692 TGTTCTTCTTGATGCAAAGGGACATATAAAGATCACTGATTTTGGCCTCAGTGCCCTGCC 751 Query 534 TCAACATTATAGGGAAGATGGGTTGCTACATACAACTTGTGGTAGTCCTAACTATGTCGC 593 ||| |||| |||||| || || ||| | |||||||| ||||| |||||||| || || || Sbjct 752 TCAGCATTTTAGGGATGACGGATTGTTGCATACAACCTGTGGAAGTCCTAATTACGTTGC 811 Query 594 GCCTGAGGTTCTAGCTAAT-GAGGGCTATGATGGTGCAGCATCAGATATATGGTCATGTG 652 |||||||||| |||| || |||| || ||||||||||| |||||||||||||| |||| Sbjct 812 GCCTGAGGTTTTAGCCAACAGAGGT-TACGATGGTGCAGCGTCAGATATATGGTCGTGTG 870 Query 653 GAGTAATCTTGTATGTTATTCTTACGGGATGTCTCCCTTTTGATGAT-GCAAACCTTGCA 711 | |||||||||||||| ||||| || |||||||| |||||||| ||| | |||||||| | Sbjct 871 GTGTAATCTTGTATGTGATTCTAACCGGATGTCTTCCTTTTGACGATAG-AAACCTTGTA 929 Query 712 GTTATTTGCCGGAAGATATTCAAAGGGGATCCC-CCAATACCTAGATGGATATCACTGGG 770 ||| ||| || |||||||| |||||| || ||| |||||||| |||||| |||||| || Sbjct 930 GTTCTTTACCAGAAGATATGCAAAGGAGA-CCCACCAATACCAAGATGGTTATCACCAGG 988 Query 771 AGCTAA-AACTATGATCAAGAGAATGCTTGATCCTAATCCAGTCACGAGGGTGACAATCG 829 || || ||| ||||| ||||||||||| ||||| ||||||||||| ||| | ||| ||| Sbjct 989 TGC-AAGAACCATGATTAAGAGAATGCTCGATCCAAATCCAGTCACCAGGATCACAGTCG 1047 Query 830 CAGGTAT-AAAGGCTCAT-GATTGGTTTAAACATGACTACACTCCTTCAAACTAC-GATG 886 ||||| |||| | || || ||||| ||||| || || | |||||||| | | |||| Sbjct 1048 TGGGTATTAAAG-C-CAGCGAGTGGTTCAAACACGAGTATATTCCTTCAAT-TCCCGATG 1104 Query 887 ACGACGATGATGTATAC-TTGATC-CA-A-GAAGATGTTTT-T-A-TG-ATGAA---GGA 935 | || || || | | | |||| | || | || |||| ||| | | | | ||| ||| Sbjct 1105 ATGATGACGAAGAAGAAGTTGA-CACAGACGATGATGCTTTCTCAATCCAAGAACTCGGA 1163 Query 936 AT-ATGAAGAAGAGAAGAGCCCTGATTCTCCAACCATTATCAACGCTTTTCAGTTGATTG 994 | | ||||||| |||| || |||||| ||||| || ||||| || |||||||| || | Sbjct 1164 -TCA-GAAGAAGGGAAGGGCAGTGATTCACCAACGATCATCAATGCGTTTCAGTTAATCG 1221 Query 995 GAATGTCCTCGTTTCTCGACCTCTCAGGTTTCTTTGAGACA-GAGAAAT-TATCAGAGAG 1052 ||||||| || ||||| ||||| || ||||||||||| ||| ||||| | |||||||||| Sbjct 1222 GAATGTCTTCCTTTCTTGACCTGTCCGGTTTCTTTGA-ACAAGAGAA-TGTATCAGAGAG 1279 Query 1053 GCAGA-TAAGATTCACGTCAAATAGTTTAGCTAAAGATTTGTTGGAGAACATCGAAAC-G 1110 | ||| |||||||||| |||||||| | || |||||||| | ||||| |||||||| | Sbjct 1280 G-AGAATAAGATTCACTTCAAATAGCTCCGCAAAAGATTTACTCGAGAAAATCGAAACAG 1338 Query 1111 ATTTTCACGGAGATGGGCTTTTGTTTACAGAAGAAACATGCAAAGTTAAAAGCAAT-CAA 1169 || || |||||||| || || |||| ||||||||||| |||||||||| || ||| Sbjct 1339 CCGTT-ACAGAGATGGGATTCAGTGTACAAAAGAAACATGCGAAGTTAAAAGTAAAACAA 1397 Query 1170 AGAAGAAAGCA-CTCAAAAAAGG-CAA-TGCGGTTTATCGGTAACGGCTGAGGTTTTCGA 1226 |||||||| | | || ||| || ||| | |||||||| ||||| |||||||||||||| Sbjct 1398 -GAAGAAAGAAAC-CAGAAA-GGTCAAGTT-GGTTTATCAGTAACAGCTGAGGTTTTCGA 1453 Query 1227 GATAAGTCCGTCCCTGAATGTGGTTGAACTAAGAAAATCACATGGCGATTCGTCTCTATA 1286 ||||| ||||| ||||| |||||||| ||||||||||| |||||||||| | | |||| Sbjct 1454 GATAAAACCGTCACTGAACGTGGTTGAGCTAAGAAAATCTTATGGCGATTCATGTTTATA 1513 Query 1287 TAAACAGTTGTACGAGCGATTATTGAATGA-GCTGGGCTCATC 1328 || ||||||||||||| || |||| || || | ||||| |||| Sbjct 1514 TAGACAGTTGTACGAGAGACTATTAAAAGACG-TGGGCACATC 1555 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60182587100 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5