BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48268.1
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314261 jgi|Araly1|314261|fgenesh1_pm.C_scaffold_1003041 798 0.0
> Ahg314261 jgi|Araly1|314261|fgenesh1_pm.C_scaffold_1003041
Length=1113
Score = 798 bits (432), Expect = 0.0
Identities = 618/703 (88%), Gaps = 32/703 (5%)
Strand=Plus/Plus
Query 87 GGATGTGGTGACAGAGATTCTTACGAGATTCCCTGT-TAAAACCCTAATG-GATTCAAGT 144
|||||||||||||||||||||||||||||| ||| | ||||||||||||| |||||||||
Sbjct 3 GGATGTGGTGACAGAGATTCTTACGAGATTGCCT-TCTAAAACCCTAATGAGATTCAAGT 61
Query 145 GCGTCTCAAAGCTCTGGTCATCTATCATACGCTCTCCATAGTCCATACTTTACCAGTCGT 204
||||||||||||||||||||||| |||| | | || | ||||||||| ||||| |||
Sbjct 62 GCGTCTCAAAGCTCTGGTCATCTCTCAT-C-CACT-C----TCCATACTTGACCAGCCGT 114
Query 205 TTCATTAAGGTCCCATCTCAACGAATTTACATTTGTGTATCACATTTCGAGGACTACCGT 264
||| ||| |||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 115 TTCCTTACGGTCCCATCTCAACGAATTTACATTTGTTTATCACACTACGAGGACTACCGT 174
Query 265 CCCTCTAAAATCCTATCATTA-GCTCCATCCGCTACTAGTCCATCTTCCTCC--T-TTGT 320
| |||| |||||||| | ||| | ||||| |||||||||||||||||||||| | ||||
Sbjct 175 CGCTCTGAAATCCTAACTTTATG-TCCATGCGCTACTAGTCCATCTTCCTCCTTTGTTGT 233
Query 321 T------G-T-TGACCATCCGAGATAGGGGAGGCAAGATCTTACAAAAACTTAGTGGCTT 372
| | | ||||||||| | ||||||||||| ||||||||||||| ||| |||||||
Sbjct 234 TGACCACGATCTGACCATCCAAAATAGGGGAGGCCAGATCTTACAAAATCTTTGTGGCTT 293
Query 373 CATCTGCTACACATTTTTGAAAAAACCGCGAATGTATAACCCTACCACCAGACAACTTGT 432
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CATGTGCCACACATTTTTGAAAAAACCGCGAATGTATAACCCTACCACCAGACAACTTGT 353
Query 433 GACCTTGCCCACCATAAAATTAAAAACCAAAACCTCGGCTCCAGAAAGGTCGAAGTGGTG 492
|||||| |||||||||||||||||| |||||||||| |||||||| || || | ||||||
Sbjct 354 GACCTTTCCCACCATAAAATTAAAACCCAAAACCTCCGCTCCAGACAGATCTAGGTGGTG 413
Query 493 TTACTATTTTGGACATTACCCTATTAACGAACAGTACAAAGTTACTCTGCTCAGTTGTCG 552
|||||||||||||||| ||||| ||||| ||||||||||||| |||||||||||||| |
Sbjct 414 TTACTATTTTGGACATGACCCTGTTAACAAACAGTACAAAGT-ACTCTGCTCAGTTG--G 470
Query 553 TCGGATATTTTATTTTATCATCAGACCATTGGGTCTTTGACCTAAAACCTGGAGGTTCGT 612
|| || || | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 471 --GG-TACCTTCGATG-TCGTCAGACCATTGGGTCTTTGACCTAAAACCTGGAGGTTCGT 526
Query 613 GGAAAAAGGTGACTTTGCCTCCCGTGGACTTTTATCCTCACCTTCCTCTTAGACAAGGAC 672
||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 527 GGAAAAAGGTGACTTTGCCTCTAGCGGATTTTTATCCTCACCTTCCTCTTAGACAAGGAC 586
Query 673 TATCATTGAATGGGGTTATACATTACCTGGCT-TGGATTGATTCGTCTAATTATATGGTT 731
| |||||||||||||||||| |||||||||| || ||||||| || ||||||| |||||
Sbjct 587 TGTCATTGAATGGGGTTATATATTACCTGGCAATG-ATTGATTGGTATAATTATGTGGTT 645
Query 732 GTGAGCTTCGACATCGGATATGAAGAATTCAAAATGATCGAAG 774
||||||||||||||| ||| |||||| |||||||||||| |||
Sbjct 646 GTGAGCTTCGACATCAGATCTGAAGAGTTCAAAATGATCCAAG 688
Score = 448 bits (242), Expect = 6e-125
Identities = 315/349 (90%), Gaps = 9/349 (3%)
Strand=Plus/Plus
Query 772 AAGCCATCAAGAAGGTGTGTCTTATAGAATATGGCGGAAAAGTAACTGTTTTTTACCATA 831
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 722 AAGCTATCGAGAAGGTGTGTCTTATAGAATATGGCGGAAAAGTAACTGTTTTTGACCATA 781
Query 832 CCGATCTTGAAGACAAGAGTACAGTGAATTTATGGGTTCTAGAAGATGTCAGGA-CAAAG 890
|| |||||||||||||| ||||||||||||||||||| |||||||||||||| | ||| |
Sbjct 782 CCTATCTTGAAGACAAGGGTACAGTGAATTTATGGGTCCTAGAAGATGTCAGAAACAA-G 840
Query 891 GAGTGGTTGGCGAAAACTCTGGTTTTGCAACCTTGTCCGCTGCATTTGGTCAAGAACGTT 950
|| ||||||| ||| |||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 841 GAATGGTTGGGGAAGACTCTGGTTTTGCAGCCTTGTCAGCTGCATTTGGTCAAAAACGTT 900
Query 951 AGATTGGATTGGAGTTAAAAGGTATAACTCAAAGTGGCAAGGTTATAATGACACCAGATT 1010
| ||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 A-ATT---T-GGAGGTAAAAGGTATAACTCAAAGTGGCAAGGTTATAATGACACCACATT 955
Query 1011 ATTTGTTTGATATGTTGTACATTCTTTGTTGTGATCTGCAAAGTAATGATATTAGAGAGA 1070
|||||||| ||| ||| ||||||||||||| ||||||||||||||||||||| |||| ||
Sbjct 956 ATTTGTTTTATAAGTTTTACATTCTTTGTTATGATCTGCAAAGTAATGATATGAGAGTGA 1015
Query 1071 TTAAAATCAAAGGTATACATTACC-ATTATGTTCCTAAGAAGGGTGAAT 1118
|||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct 1016 TTAAAATCAAAGGTATACCTTACCTATGGCGT-CCTAAGAAGGGTGAAT 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43574494131
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5