BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48270.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923155 jgi|Araly1|923155|scaffold_104436.1 1628 0.0
> Ahg923155 jgi|Araly1|923155|scaffold_104436.1
Length=1026
Score = 1628 bits (881), Expect = 0.0
Identities = 974/1020 (95%), Gaps = 1/1020 (0%)
Strand=Plus/Plus
Query 186 GTTTTGGAATCACATATAACAATGTCGGCGGTTCTCACAGCCGGCGGAGGCTTAACTGCC 245
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2 GTTTTGAAATCACAGATAACAATGTCGGCGGTACTCACAGCCGGCGGAGGCTTAACTGCC 61
Query 246 GGGGATCGCAGCATTATTACGGCGATTAACACCGGCGCTTCGAGTCTCTCATTCGTCGGC 305
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GGAGATCGCAGCATTATTACGGCGATTAACACCGGCGCTTCGAGTCTCTCATTCGTCGGC 121
Query 306 TCAGCCTTCATCGTTCTCTGCTACTGCCTCTTCAAAGAACTTCGAAAATTCTCTTTCAAG 365
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 122 TCAGCCTTCATCGTTCTCTGCTATTGCCTCTTCAAAGAACTTCGAAAATTCTCTTTCAAG 181
Query 366 CTCGTCTTCTACCTTGCTCTCTCTGATATGCTTTGCAGTTTCTTCCTAATCGTTGGGGAT 425
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 182 CTCGTCTTCTACCTTGCTCTCTCTGATATGCTTTGCAGTTTCTTCCTTATCGTTGGGGAT 241
Query 426 CCTTCAAAGGGGTTCATTTGTTACGCACAAGGCTACACTACTCATTTCTTCTGCGTTGCT 485
|||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 242 CCTTCAAAGGGGTTTATTTGTTATGCACAAGGATACACCACTCATTTCTTCTGCGTTGCT 301
Query 486 TCGTTCTTGTGGACAACTACAATTGCTTTCACTCTTCATCGTACTGTTGTCAAGCATAAA 545
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 302 TCGTTCTTGTGGACAACTACAATTGCTTTCACTCTTCATCGTACTGTGGTTAAGCATAAA 361
Query 546 ACTGATGTGGAGGATTTGGAAGCAATGTTTCATTTGTATGTATGGGGGACTTCCTTGGTT 605
||||||||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||
Sbjct 362 ACTGATGTGGAGGATTTGGAAGCTTTGTTTCATTTGTATGTTTGGGGAACTTCGTTGGTT 421
Query 606 GTGACTGTCATACGTTCTTTTGGTAACAACCACTCACATTTGGGGCCATGGTGCTGGACG 665
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 422 GTGACTGTCATACGTTCTTTTGGTAATAACCACTCACATTTGGGGCCGTGGTGCTGGACA 481
Query 666 CAAACTGGTCTTAAGGGAAAGGCTGTTCATTTTTTAACTTTCTACGCTCCTCTTTGGGGA 725
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 482 CAAACTGGTCTTAAGGGGAAGGCTGTTCATTTCTTAACTTTCTACGCTCCTCTTTGGGGT 541
Query 726 GCCATTCTTTACAATGGGTTTACTTACTTCCAAGTGATACGGATGCTAAGAAATGCTAGA 785
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 542 GCCATTCTTTACAATGGCTTTACTTACTTCCAGGTGATACGGATGCTAAGAAATGCTAGA 601
Query 786 CGTATGGCAGTTGGAATGTCAGACCGAGTCGATCAATTTGATAATAGAGCAGAGTTAAAG 845
||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 602 CGTATGGCAGTTGGAATGTCAGACCGAGTAGATCAGTTTGACAATAGAGCAGAGTTAAAG 661
Query 846 GTGTTGAACAGATGGGGATACTATCCACTCATTCTAATAGGATCATGGGCATTCGGCACT 905
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 662 GTGTTGAACCGATGGGGATACTATCCGCTCATTCTAATAGGATCATGGGCATTCGGCACT 721
Query 906 ATTAACCGTATCCATGATTTCATCGAGCCAGGGCATAAGATCTTCTGGCTCTCAGTTCTT 965
|| ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 722 ATCAACCGCATTCATGATTTCATCGAGCCAGGCCATAAGATCTTCTGGCTCTCAGTTCTT 781
Query 966 GACGTTGGGACAGCTGCACTAATGGGCTTGTTCAATTCAATAGCCTATGGTTTCAACAGC 1025
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GACGTTGGGACAGCTGCATTAATGGGCTTGTTCAATTCAATAGCCTATGGTTTCAACAGC 841
Query 1026 TCAGTGCGTCGAGCAATCCATGAGAGACTGGAGCTATTCTTGCCAGAACGGCTATATCGA 1085
|||||||| |||||||||||||| ||||| || || |||||||| |||||| ||||||||
Sbjct 842 TCAGTGCGCCGAGCAATCCATGAAAGACTAGAACTGTTCTTGCCGGAACGGATATATCGA 901
Query 1086 TGGCTTCCAAGCAATTTCAGACCAAAAAACCATCTGATTCTACATCAGCAACAACAACAG 1145
||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 902 TGGTTTCCGAGCAATTTCAGACCAAAAAGCCATCTGATTCTACATCAGCAACAACAACAG 961
Query 1146 CGAAGCGAAATGGTATCACTCAAGACCGAGGACCAGCAATGACACTAACTTTCAACTAAT 1205
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 962 CGAAGCGAAATGGTATCACTCAAGACCGAGGACCAGCAATGACACTAACTTTCAAC-AAT 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5