BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48280.1
Length=1949
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473964 jgi|Araly1|473964|fgenesh2_kg.1__3918__AT1G48280.1 2880 0.0
> Ahg473964 jgi|Araly1|473964|fgenesh2_kg.1__3918__AT1G48280.1
Length=1977
Score = 2880 bits (1559), Expect = 0.0
Identities = 1849/1983 (93%), Gaps = 43/1983 (2%)
Strand=Plus/Plus
Query 1 CAGCTTCGAAGTCGTCTCTTGGATTTTTACAAGTCAAAAGCTGAGTAAGACGTTAACCAC 60
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| | ||
Sbjct 1 CAGCTTCGAAGTCGTCTCTTGGATTTTTACGAGTCAAAA-CTGAGTAAGACTTTAGCGAC 59
Query 61 GAGTCTTCTCGCCGGCGACCGTCGTCA-ACGGCGGAGATTTTGTTAGTTATGTCCCGCAT 119
||||| ||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 60 GAGTCGTCTCGCCGGTGACCGCCGT-ATACGGCGGAGATTTTGTTAGTTATGTCCCGCAT 118
Query 120 TTCCACCACCTCCACTACTCCTTCACGCGTGAGAGCTGCGAATTCGCACTACTCAGTGAT 179
||||||| |||||||||||||||| || || |||||||||||||||||||| ||||||||
Sbjct 119 TTCCACCGCCTCCACTACTCCTTCTCGTGTTAGAGCTGCGAATTCGCACTATTCAGTGAT 178
Query 180 CTCTAAACCTAGAGCACAAGACGATAACGGTCTCACCGGAGGTAAACCGAAATCGTCAGG 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 CTCTAAACCTAGAGCCCAAGACGATAACGGTCTCACCGGAGGTAAACCGAAATCGTCCGG 238
Query 240 TTACGATGTGAAAAATGATCCAGC---GAAACGGCGATCAATTCTGCTGAAAAGAGCGAA 296
| |||||||||| |||||||| || ||| ||||||||||||||||| |||||||||||
Sbjct 239 TCACGATGTGAAGAATGATCCGGCTAAGAACCGGCGATCAATTCTGCTTAAAAGAGCGAA 298
Query 297 ATCTGCAGAGGAGGAGATGGCGGTTTTGGCTCCTCAGAGAGCTCGGTCTGTGAATCGTCC 356
||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATCCGGAGAGGAGGAGACGGCGGTTTTGGCTCCTCAGAGAGCTCGGTCTGTGAATCGTCC 358
Query 357 GGCGGTTGTAGAGCAATTCGGTTGTCCGAGGCGGCCGATTTCTCGAAAAAGC-GAAGAGA 415
|||||| ||||||||||||||||||||||||||||| |||||| | |||| | ||||||
Sbjct 359 GGCGGTCGTAGAGCAATTCGGTTGTCCGAGGCGGCCAATTTCTAGGAAAA-CTGAAGAGT 417
Query 416 CGGTAATGGCTACAGC---GGCGGCGGAGGATGAGAAGAGGAAGAGAATGGAGGAATTGG 472
| ||||||||||| || || |||||||||||||||||||||||||||| |||||||||
Sbjct 418 CAGTAATGGCTACGGCGGTGGTGGCGGAGGATGAGAAGAGGAAGAGAATGAAGGAATTGG 477
Query 473 AGGAGAAGCTGGTAGTGAATGAGTCGTTGATTAAGGATTTGCAGTTGCAGGTTTTGAATT 532
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 478 AGGAGAAGCTAGTAGTGAATGAGTCGTTGATTGAGGATTTGCAGTTGCAGGTTTTGCATT 537
Query 533 TGAAAACGGAGTTAGAGGAAGCTCGTAATTCAAATGTAGAGCTTGAGTTGAATAATAGGA 592
|||||||||||||||||||||||||||||||||||| ||||||||||||||| || | ||
Sbjct 538 TGAAAACGGAGTTAGAGGAAGCTCGTAATTCAAATGCAGAGCTTGAGTTGAAGAACAAGA 597
Query 593 AGCTTTCTCAGGATCTTGTTTCAGCTGAAGCTAAGATCTCATCTCTTTCTTCTAACGACA 652
|||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||
Sbjct 598 AGCTTTCTCAGGATCTTGCTTCAGCTGAAGCTAAGATCTCATCACTTTCCTCTAACGACA 657
Query 653 AGCCAGCTAAAGAACATCAAAACAGCAGATTCAAAGATATCCAGAGGTTAATAGCTAGCA 712
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 658 AGCCAGCTAAAGAACATCAGAACACCAGATTCAAAGATATCCAGAGGTTAATAGCTAGCA 717
Query 713 AATTAGAGCAACCCAAGGTTAAGAAGGAGGTAGCAGTAGAGTCATCAAG----A-T---- 763
||||||||||| |||||||||| |||||||||||||||||||||||||| | |
Sbjct 718 AATTAGAGCAATCCAAGGTTAAAAAGGAGGTAGCAGTAGAGTCATCAAGCTCCATTAAAA 777
Query 764 -----T-ATCT------CCACCATCACCTTCTCCTTCAAGATTACCGCCAACACCGCCAT 811
| |||| |||||| ||||||| ||||||||||||| ||||||||||||||
Sbjct 778 CAAGATCATCTCCACAACCACCAGCACCTTCACCTTCAAGATTACAGCCAACACCGCCAT 837
Query 812 TACCGAAGTTTTTGGTGTCTCCAGCTAGCAGTTTAGGTAAAAGAGATGAAAATTCTTCAC 871
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 838 TGCCGAAGTTTTTGGTGTCTCCAGCTAGCAGTTTAGGTAAAAGAGATGAAAGTTCTTCAC 897
Query 872 CCTTTGCACCTCCAACACCACCGCCTCCGCCGCCACCACCACCACCTAGACCTCTTGCTA 931
|||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 898 CCTTTGCACCACCAACACCACCGCCTCCACCACCACCACCACCACCTAGGCCTCTTGCTA 957
Query 932 AAGCAGCTCGTGCTCAGAAGTCTCCTCCAGTTTCACAGCTATTTCAGTTGTTGAATAAGC 991
||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| ||||
Sbjct 958 AAGCAGCTCGTGCGCAGAAGTCTCCTCCAGTTTCGCAGTTATTTCAGTTGTTGAAGAAGC 1017
Query 992 AAGATAATAGTAGAAACCTTTCTCAGTCTGTTAATGGGAAT-AAGTCTCAAGTTAACAGT 1050
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1018 AAGATAATAGTAGAGACCTTTCTCAGTCTGTTAATGGGAATCAA-TCTCAAGTTAACAGT 1076
Query 1051 GCTCACAACAGTATAGTCGGAGAAATTCAAAACCGTTCTGCGCATCTCATCGCTATAAAA 1110
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1077 GCTCACAACAGTATAGTCGGAGAAATTCAAAACCGTTCTGCGCACCTCATCGCTATAAAA 1136
Query 1111 GCTGATATAGAGACAAAAGGGGAGTTTATCAATGATCTTATCCAGAAAGTTCTGACCACT 1170
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1137 GCTGATATAGAGACAAAGGGGGATTTTATCAATGATCTTATCCAGAAAGTTCTGACCACT 1196
Query 1171 TGTTTTTCGGATATGGAAGATGTCATGAAATTTGTGGATTGGCTTGATAAAGAACTGGCA 1230
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1197 TGTTTTTCGGATATGGAAGATGTCATGAAATTTGTGGATTGGCTTGATAAAGAACTAGCA 1256
Query 1231 ACTCTGGCTGATGAGCGTGCTGTGCTTAAGCATTTCAAGTGGCCTGAGAAGAAAGCCGAT 1290
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ACTCTGGCTGATGAGCGAGCTGTGCTTAAGCATTTCAAGTGGCCTGAGAAGAAAGCCGAT 1316
Query 1291 ACCCTGCAAGAGGCTGCAGTTGAATACCGTGAGCTAAAGAAACTGGAAAAAGAACTTTCT 1350
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1317 GCCTTGCAAGAGGCTGCAGTTGAATACCGCGAGCTAAAGAAACTGGAAAAAGAACTATCT 1376
Query 1351 TCCTACTCTGATGATCCGAACATTCACTACGGTGTTGCCCTGAAGAAAATGGCCAACTTA 1410
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TCGTACTCTGATGATCCGAGCATTCACTACGGTGTTGCCCTGAAGAAAATGGCCAACTTA 1436
Query 1411 CTAGACAAGTCGGAGCAGAGGATAAGGAGGCTAGTCAGATTACGTGGCTCATCCATGCGT 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CTAGACAAGTCGGAGCAGAGGATAAGGAGGCTAGTCAGATTACGTGGCTCATCCATGCGT 1496
Query 1471 TCTTACCAGGACTTTAAGATCCCAGTCGAGTGGATGCTTGACTCGGGAATGATATGCAAG 1530
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1497 TCTTACCAAGACTTTAAGATCCCAGTCGAGTGGATGCTTGACTCGGGAATGATAAGCAAG 1556
Query 1531 ATCAAAAGAGCATCGATCAAACTTGCGAAAACCTACATGAATAGAGTAGCGAATGAGCTG 1590
|||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||
Sbjct 1557 ATCAAAAGAGCATCGATCAAGCTTGCTAGAACTTACATGAATAGAGTAGCGAATGAGCTA 1616
Query 1591 CAATCAGCTCGTAACTTGGATAGAGAGTCTACTAAAGAAGCATTGCTTCTTCAAGGCGTC 1650
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1617 CAATCAGCTCGTAACTTGGATAGAGAGTCTACTCAAGAAGCATTGCTTCTTCAAGGCGTC 1676
Query 1651 CGATTTGCTTACAGAACGCACCAGTTTGCGGGAGGGCTCGATCCAGAGACATTGTGTGCA 1710
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CGATTTGCTTACAGAACGCATCAGTTTGCGGGAGGGCTCGATCCAGAGACATTGTGTGCA 1736
Query 1711 TTAGAAGAGATTAAGCAACGTGTTCCGAGTCATCTCCGGCTGGCACGGGGGAATATGGCC 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 TTAGAAGAGATTAAGCAACGTGTTCCGAGTCATCTCCGGCTGGCACGGGGGAATATGGCC 1796
Query 1771 GGAAATCTGTCGTAGAAAAGTAATCAGAGAAATGTGAGGCATATGGGCTGTGGTTCTGGC 1830
|||| || |||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1797 GGAACTCCGTCGTAGAAAAGTAATCAGAGAAATGTGAGGCATATGGCCTTTGGTTTTGGC 1856
Query 1831 TACAAAATTCGTTATTTGTGTTAATAGTGTTTGGT-GAGTCAG-----GTTGTGTCCCAT 1884
|| ||| |||||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct 1857 TATAAA-TTCGTTATTTGTGTTAATAGTGTTTGGTTGAGTCAGTAAATGTTGTGGCCCAC 1915
Query 1885 TTAATAATAATGTTATAA-TGTATCTAAAATGTTCCTCCAGTGAATTACTCAATTAATTT 1943
|||||||||||||| || || |||||||||||||||||| |||||||||||||||| ||
Sbjct 1916 GTAATAATAATGTTA-AAGTGAATCTAAAATGTTCCTCCAATGAATTACTCAATTAAATT 1974
Query 1944 TTG 1946
|||
Sbjct 1975 TTG 1977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73247541135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5