BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48300.1
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913857 jgi|Araly1|913857|Al_scaffold_0001_4111 1367 0.0
> Ahg913857 jgi|Araly1|913857|Al_scaffold_0001_4111
Length=1083
Score = 1367 bits (740), Expect = 0.0
Identities = 844/895 (94%), Gaps = 4/895 (0%)
Strand=Plus/Plus
Query 1 CGAGATGCGGCgaggagaaagagaaggttaaggttatggagaaggagaagaaggcgttga 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 191 CGAGATGCGGCGAGGAGAAAGAAAAGGTTAAGGTTATGGAGAAGGAGAAGAAAGCGTTGA 250
Query 61 agaagaaggcgaaa-gTTCTTAAAAGTCTTTCTAAGAACTTGGATATGTTCTCTAGTATA 119
| |||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 251 AAAAGAAGGC-AAAGGTTCTTAAAAGTCTTTCTAAGAACTTGAATATGTTCTCAAGTATA 309
Query 120 GGGTTTGGTCTTGATCCTGAAGCTGGTTTGGTTGGTGAGATTCAGACCAAGACAATCTCG 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 310 GGGTTTGGTCTTGATCCTGAAGCTGGTTTGGTTGGTGAGGTTCAGACCAAGACAATCTCG 369
Query 180 GAAGCTACAGAGATATTGGTTAAGCAGCTGGAGCAGTTGAAAGCAGAGGAGAAGATATTG 239
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |||
Sbjct 370 GAAGCAACAGAGATATTGGTTAAGCAGCTAGAGCAGTTGAAAGCAGAGGAGAAGCTGTTG 429
Query 240 AAGAAACAGAGGAAAGAAGAGAAGGCTAAAGCCAAAGCCATGAAGAAGATGACTGAAATG 299
|||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||
Sbjct 430 AAGAAACAGAGGAAAGAAGAGATGGCAAAAGCCAAAGCTATGAAGAAGATGACTGAAATG 489
Query 300 GACTCTGAATCATCTTCTTCGTCTGAATCAAGTGATAGTGATTGTGATAAAGGCAAAGTT 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 490 GACTCTGAATCATCTTCTTCGTCTGAATCAAGTGACAGTGATTGTGATAAAGGCAAAGTT 549
Query 360 GTGGACATGAGCTCTTTAAGAAACAAGGCTAAACCGGTTCTTGAGCCGTTACAACCAGAA 419
|| |||||||||||| | |||||||||||||||||| |||||||||||||||||||||||
Sbjct 550 GTTGACATGAGCTCTCTCAGAAACAAGGCTAAACCGATTCTTGAGCCGTTACAACCAGAA 609
Query 420 GCCACAGTAGCAACCCTTCCTAGGATCCAAGAGGATGCA-ATTTCTTGCAAGAACACCAG 478
||||||||||||||||||||||| |||||||| |||||| | | ||||||||||||||||
Sbjct 610 GCCACAGTAGCAACCCTTCCTAGAATCCAAGAAGATGCACAAT-CTTGCAAGAACACCAG 668
Query 479 TGAAGCATTGCAGATTGCTCTACAAACATCCACAATTTTTCCTTCAATGGCCAATCCTGG 538
||||||||||||||||||||| ||||||||||| | ||||| ||||||| |||||||||
Sbjct 669 TGAAGCATTGCAGATTGCTCTGCAAACATCCACTGTCTTTCCCTCAATGGGCAATCCTGG 728
Query 539 ACAGACATTGAAGACGGTAGAAGCGGTTTCAGTGGTTGGATTACCATTGAATAGAGTAGA 598
|||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 729 ACAGACATTGAAGACGGTAGAAGCGGTTTCAGTGGTTGGATTGCCTTTGAAGAGAGTAGA 788
Query 599 AGTGTGTATGGGAGGGAAGTGTAAGAGATCAGGAGGAGCTTTGTTGTTGGATGAGTTTCA 658
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 789 AGTGTGTATGGGAGGGAAGTGTAAGAAATCAGGAGGAGCTTTGTTGTTGGATGAGTTTCA 848
Query 659 AAGGGCGATGACGGGTTTCGAAGGATCTGCTGTGGCTTGCAAGTGCATGGGGAAGTGTCG 718
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 849 AAGGGCGATGACGGGTTTCGAAGGTTCCGCTGTGGCTTGCAAGTGCATGGGAAAGTGTCG 908
Query 719 TGATGGCCCAAACGTTAGAGTTGTGAAGGAGACTGATGCTGTGATGACTGATTCAGTTAG 778
|||||| |||||||||||||| || || ||||||||| ||||||||||||||||||||||
Sbjct 909 TGATGGTCCAAACGTTAGAGTCGTCAACGAGACTGATACTGTGATGACTGATTCAGTTAG 968
Query 779 GACACCATCCAAGACCCTTTGTGTAGGAGTTGGATTGCAGGATGTGGAAACTATTGTGAC 838
|||||| ||||||||| |||| |||||||||||||| |||||||||||||||||||||||
Sbjct 969 GACACCGTCCAAGACCGTTTGCGTAGGAGTTGGATTACAGGATGTGGAAACTATTGTGAC 1028
Query 839 AAGTTTCTTTGATGAAGAATGTAGCAGAGAAGGACTCGGTTCTGTCTCATATTGA 893
||||||||||||||||||||||||||| || |||||||||| ||||||| |||||
Sbjct 1029 AAGTTTCTTTGATGAAGAATGTAGCAGGGAGGGACTCGGTTATGTCTCACATTGA 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41706471198
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5