BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48320.1
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473967 jgi|Araly1|473967|fgenesh2_kg.1__3921__AT1G48320.1 931 0.0
> Ahg473967 jgi|Araly1|473967|fgenesh2_kg.1__3921__AT1G48320.1
Length=698
Score = 931 bits (504), Expect = 0.0
Identities = 597/641 (93%), Gaps = 10/641 (2%)
Strand=Plus/Plus
Query 1 AAAACCCATTTCATCGAAATTTCCACTTGACGTTAATCCCAACTACCACCAATTCAATCC 60
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1 AAAACCCATTTCATCGAAATTTCCAC-TGACGTTAATCCCAACAACCACCAATTCAATCC 59
Query 61 ATTTCTCAAACTCTCTTATCATCTCTAACACACCCACCCTACCTACCTCCATCTCTCTCT 120
||||||||| |||| ||||||||||||||||||||| | ||||||| | ||||
Sbjct 60 ATTTCTCAATCTCTTTTATCATCTCTAACACACCCA---T-CCTACCT--ACCTCTGAAA 113
Query 121 CTGCAACAGAGCACAAAAATGGATTCTGCATCGTCCAACACCAAAGCTATAGACCCTCCA 180
| | ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 114 CAG-AACAGAGCACACAAATGGATTCTGCATCGTCCAAGACCAAAGCTATAGACCCTCCT 172
Query 181 CTTCACATGTTGGGTTTCGAGTTCGATGAATTATCTCCGACACGTATCACAGGTCGCCTT 240
||||||||||| |||||||||||||||||||||||||| |||||| | |||||||| |||
Sbjct 173 CTTCACATGTTAGGTTTCGAGTTCGATGAATTATCTCCAACACGTGTAACAGGTCGTCTT 232
Query 241 CCTGTTTCTCCCGTC-TGCTGCCAGCCTTTCAAGGTGTTACACGGTGGTGTATCTGCTTT 299
|| |||||| || | || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 233 CCCGTTTCT-CCAACATGTTGCCAGCCTTTCAAGGTGTTACATGGTGGTGTATCTGCTTT 291
Query 300 GATAGCCGAGTCTTTAGCAAGTATGGGAGCTCACATGGCTTCTGGTTTCAAAAGGGTCGC 359
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GATCGCTGAGTCTTTAGCAAGTATGGGAGCTCACATGGCTTCTGGTTTCAAAAGGGTCGC 351
Query 360 TGGAATTCAACTCTCAATCAACCATTTGAAGAGTGCTGATCTTGGAGACCTTGTCTTCGC 419
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 352 TGGAATTCAACTCTCAATCAACCACTTGAAGAGTGCTGATCTCGGAGACCTTGTCTTCGC 411
Query 420 CGAAGCAACTCCTGTAAGCACAGGGAAGACTATTCAGGTTTGGGAAGTCAAGTTATGGAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 CGAAGCAACTCCTGTAAGCACAGGGAAGACTATTCAGGTTTGGGAAGTCAAGTTATGGAA 471
Query 480 AACAACACAGAAAGATAAAGCTAACAAAATCTTAATATCTTCCTCTAGAGTTACACTTAT 539
||||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 472 AACAACAGAGAAAAATAAAGCTAACAAGATCTTAATATCTTCCTCTAGAGTCACACTTAT 531
Query 540 CTGTAATCTACCTATCCCTGATAACGCCAAAGATGCAGCAAACATGCTCAAAATGGTCGC 599
||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 532 CTGTAATCTTCCTATCCCTGATAATGCCAAAGATGCAGCAAACATGCTCAAAATGATCGC 591
Query 600 AAAGTTGTAGATTTCTTCAGGCTTTTTTGTTTTACTTGTAT 640
|||||||||||||| ||||||||||||||||||||||||||
Sbjct 592 AAAGTTGTAGATTTTTTCAGGCTTTTTTGTTTTACTTGTAT 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30307719015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5