BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G48325.1

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473968 jgi|Araly1|473968|fgenesh2_kg.1__3922__AT1G48325.1         518    2e-146


> Ahg473968 jgi|Araly1|473968|fgenesh2_kg.1__3922__AT1G48325.1
Length=395

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 324/344 (94%), Gaps = 8/344 (2%)
 Strand=Plus/Plus

Query  29   ctctctctctctctctACAAAGTATACATGAAAATGGGAGGTCACGGGAGGAGGAGGAAA  88
            |||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||
Sbjct  1    CTCTCTCTCTCTCTCTACAAAGTATACATGAAAATGGGAGGTGACAAGAGGAGGAGGAAA  60

Query  89   TCATCATCATCTTTTTCTGTAGTAAAATCGTTGTTTGCGCGTTGTTCGAAGGAAAAAGAC  148
            || |||||||||||||||||| | |||||||||||| ||||||||||||| |||||||||
Sbjct  61   TCGTCATCATCTTTTTCTGTAATCAAATCGTTGTTTTCGCGTTGTTCGAATGAAAAAGAC  120

Query  149  AATTGGAACGAAGAGAGAATGATCAATGTTAGACCAAGAATCATGACCACCGACGATGAT  208
            |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct  121  AATTGGAACGAAGAGAGAGTCATCAATGTTAGACCAAGAATCATGACCACGGACGATGAT  180

Query  209  GGATGTTCTTGGACGATTGCTGAGCCTTGTATTGATAGGAGAGCCACGGCTTTTATTGCT  268
            |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GGATGTTCTT-G--GATTGCTGAGCCTTGTATTGATAGGAGAGCCACGGCTTTTATTGCT  237

Query  269  AAGTTTCACGAAACTCCAATACAAGATACTGAATAGAAAGATTATTGCTCCTTAAGATGT  328
            ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct  238  AAGTTTCACGAAACTCCAATACAAGATCCTGAATAGAA-GATTATTGCTCCTTAAGATGT  296

Query  329  AA-T--A-TATATATGTCTTAATGATTAGTACTctttttcttag  368
            || |  | ||||||||||||||||||||||||||||||||||||
Sbjct  297  AAATGTAATATATATGTCTTAATGATTAGTACTCTTTTTCTTAG  340



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16330592092


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5