BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48330.1
Length=550
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473969 jgi|Araly1|473969|fgenesh2_kg.1__3923__AT1G48330.1 662 0.0
Ahg929612 jgi|Araly1|929612|scaffold_302069.1 171 7e-42
> Ahg473969 jgi|Araly1|473969|fgenesh2_kg.1__3923__AT1G48330.1
Length=511
Score = 662 bits (358), Expect = 0.0
Identities = 477/529 (90%), Gaps = 29/529 (5%)
Strand=Plus/Plus
Query 1 AAAGAGAAGCATTTTCAAGAAGAAGTCTTAAATTCTaaacaaaaaacaaaagcataaaaa 60
|||||||||||||||||||||||| |||||| |||| |||| || | |||||
Sbjct 1 AAAGAGAAGCATTTTCAAGAAGAATTCTTAAGTTCT-------AAAC--AA--A-AAAAA 48
Query 61 aTGGCTTCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGCAACGTTCTTTAAC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 49 ATGGCTTCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGCCACGTTCTTTAAC 108
Query 121 CAACC-GCAGCAA--AC-G-A-A-CCGCCACGCAAACGCAAAGGCGAGAGAAGAACATGA 173
|||| ||||||| || | | | ||||||||||||||||||||||||||||||||||||
Sbjct 109 -AACCCGCAGCAATCACCGCACAACCGCCACGCAAACGCAAAGGCGAGAGAAGAACATGA 167
Query 174 GAAACGAACGGTACAGGAGCTTCAAGGTGATGTCATGGCTTGTGGTTATGAAGATGTCCT 233
|| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GAGACGAACCGTGCAGGAGCTTCAAGGTGATGTCATGGCTTGTGGTTATGAAGATGTCCT 227
Query 234 CGTCATGTGGTCAATTCTTGACAAGTCAAACTCTTCAAACAACCTCTCTTCTTGATTAGA 293
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 228 CGTCATGTGGTCAATTCTTGACAAGTCAAACTCTTCAAACAATCTCTCTTCTTGATTAGA 287
Query 294 ATGAGAAGGAATCCGAAATTTCTCTTTTTATTTTCTCTCTTTT---ATGTGTATAGGAAT 350
||||||| ||||||||||| |||| ||| |||||||||||||| ||||||||||| |
Sbjct 288 ATGAGAAAGAATCCGAAATGTCTCCTTTCATTTTCTCTCTTTTTTTATGTGTATAGGT-T 346
Query 351 GTATAAGCCCGTCATGCCTCTCTTCTATCTCCTTGTCTTTATGTGGTCGTGGCTTTTCTA 410
|||| |||||| |||| ||||| | | || |||| |||||||||||||||||||||| ||
Sbjct 347 GTATTAGCCCGCCATGTCTCTCATATTTCCCCTTATCTTTATGTGGTCGTGGCTTTTTTA 406
Query 411 AATTTAGAATTTTAGTGAATTTTTATCCGATGACTAGTTAATTTGGATTCGGATGTTATT 470
||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 407 AATTTAGAACTTTAGTGAATTTTTATCCGATGACTAGTT--T--GGATTCGGATGTTAGT 462
Query 471 AATCCCTGTGATGATCTATCTAATT-CACGGTGAGATTTTTCATTTTGG 518
||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 463 AATCCCTGTGATGATCTATCTAATTTCACGGTGAGATTTTTCATTTTGG 511
> Ahg929612 jgi|Araly1|929612|scaffold_302069.1
Length=286
Score = 171 bits (92), Expect = 7e-42
Identities = 203/253 (80%), Gaps = 21/253 (8%)
Strand=Plus/Plus
Query 48 aaaagcataaaaaaTGGCTTCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGC 107
||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 13 AAAAG-A-AAAAAATGGCATCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGC 70
Query 108 AACGTTCTTTAACCAACCGCAGCAA--AC----GAACCGCCA-CGC--AA-AC-G----C 152
||| ||||| ||||||||||| ||| || ||| | || || | | |
Sbjct 71 AACATTCTTCAACCAACCGCAACAATCACCAAAGAAGGGTTGTCGTGGAAGAATGGATGC 130
Query 153 -AAAGGCGAGAGAAGAACATGAGAA-ACGAACGGTACAGGAGCTTCAAGGTGATGTCATG 210
|||| | || ||||| || ||||| | ||| ||| || ||||| ||||| || ||||||
Sbjct 131 GAAAG-CAAGGGAAGAGCACGAGAAGA-GAATGGTTCAAGAGCTCCAAGGAGAAGTCATG 188
Query 211 GCTTGTGGTTATGAAGATGTCCTCGTCATGTGGTCAATTCTTGACAAGTCAAACTCTTCA 270
||||||||||| || || ||||||||||||||||| ||||||||||| || ||||| |||
Sbjct 189 GCTTGTGGTTACGACGACGTCCTCGTCATGTGGTCTATTCTTGACAAATCTAACTCCTCA 248
Query 271 AACAACCTCTCTT 283
|| ||||||||||
Sbjct 249 AATAACCTCTCTT 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20069839814
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5