BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48330.1 Length=550 Score E Sequences producing significant alignments: (Bits) Value Ahg473969 jgi|Araly1|473969|fgenesh2_kg.1__3923__AT1G48330.1 662 0.0 Ahg929612 jgi|Araly1|929612|scaffold_302069.1 171 7e-42 > Ahg473969 jgi|Araly1|473969|fgenesh2_kg.1__3923__AT1G48330.1 Length=511 Score = 662 bits (358), Expect = 0.0 Identities = 477/529 (90%), Gaps = 29/529 (5%) Strand=Plus/Plus Query 1 AAAGAGAAGCATTTTCAAGAAGAAGTCTTAAATTCTaaacaaaaaacaaaagcataaaaa 60 |||||||||||||||||||||||| |||||| |||| |||| || | ||||| Sbjct 1 AAAGAGAAGCATTTTCAAGAAGAATTCTTAAGTTCT-------AAAC--AA--A-AAAAA 48 Query 61 aTGGCTTCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGCAACGTTCTTTAAC 120 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 49 ATGGCTTCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGCCACGTTCTTTAAC 108 Query 121 CAACC-GCAGCAA--AC-G-A-A-CCGCCACGCAAACGCAAAGGCGAGAGAAGAACATGA 173 |||| ||||||| || | | | |||||||||||||||||||||||||||||||||||| Sbjct 109 -AACCCGCAGCAATCACCGCACAACCGCCACGCAAACGCAAAGGCGAGAGAAGAACATGA 167 Query 174 GAAACGAACGGTACAGGAGCTTCAAGGTGATGTCATGGCTTGTGGTTATGAAGATGTCCT 233 || |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 168 GAGACGAACCGTGCAGGAGCTTCAAGGTGATGTCATGGCTTGTGGTTATGAAGATGTCCT 227 Query 234 CGTCATGTGGTCAATTCTTGACAAGTCAAACTCTTCAAACAACCTCTCTTCTTGATTAGA 293 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 228 CGTCATGTGGTCAATTCTTGACAAGTCAAACTCTTCAAACAATCTCTCTTCTTGATTAGA 287 Query 294 ATGAGAAGGAATCCGAAATTTCTCTTTTTATTTTCTCTCTTTT---ATGTGTATAGGAAT 350 ||||||| ||||||||||| |||| ||| |||||||||||||| ||||||||||| | Sbjct 288 ATGAGAAAGAATCCGAAATGTCTCCTTTCATTTTCTCTCTTTTTTTATGTGTATAGGT-T 346 Query 351 GTATAAGCCCGTCATGCCTCTCTTCTATCTCCTTGTCTTTATGTGGTCGTGGCTTTTCTA 410 |||| |||||| |||| ||||| | | || |||| |||||||||||||||||||||| || Sbjct 347 GTATTAGCCCGCCATGTCTCTCATATTTCCCCTTATCTTTATGTGGTCGTGGCTTTTTTA 406 Query 411 AATTTAGAATTTTAGTGAATTTTTATCCGATGACTAGTTAATTTGGATTCGGATGTTATT 470 ||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| | Sbjct 407 AATTTAGAACTTTAGTGAATTTTTATCCGATGACTAGTT--T--GGATTCGGATGTTAGT 462 Query 471 AATCCCTGTGATGATCTATCTAATT-CACGGTGAGATTTTTCATTTTGG 518 ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 463 AATCCCTGTGATGATCTATCTAATTTCACGGTGAGATTTTTCATTTTGG 511 > Ahg929612 jgi|Araly1|929612|scaffold_302069.1 Length=286 Score = 171 bits (92), Expect = 7e-42 Identities = 203/253 (80%), Gaps = 21/253 (8%) Strand=Plus/Plus Query 48 aaaagcataaaaaaTGGCTTCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGC 107 ||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 13 AAAAG-A-AAAAAATGGCATCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGC 70 Query 108 AACGTTCTTTAACCAACCGCAGCAA--AC----GAACCGCCA-CGC--AA-AC-G----C 152 ||| ||||| ||||||||||| ||| || ||| | || || | | | Sbjct 71 AACATTCTTCAACCAACCGCAACAATCACCAAAGAAGGGTTGTCGTGGAAGAATGGATGC 130 Query 153 -AAAGGCGAGAGAAGAACATGAGAA-ACGAACGGTACAGGAGCTTCAAGGTGATGTCATG 210 |||| | || ||||| || ||||| | ||| ||| || ||||| ||||| || |||||| Sbjct 131 GAAAG-CAAGGGAAGAGCACGAGAAGA-GAATGGTTCAAGAGCTCCAAGGAGAAGTCATG 188 Query 211 GCTTGTGGTTATGAAGATGTCCTCGTCATGTGGTCAATTCTTGACAAGTCAAACTCTTCA 270 ||||||||||| || || ||||||||||||||||| ||||||||||| || ||||| ||| Sbjct 189 GCTTGTGGTTACGACGACGTCCTCGTCATGTGGTCTATTCTTGACAAATCTAACTCCTCA 248 Query 271 AACAACCTCTCTT 283 || |||||||||| Sbjct 249 AATAACCTCTCTT 261 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20069839814 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5