BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48350.1
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473970 jgi|Araly1|473970|fgenesh2_kg.1__3924__AT1G48350.1 1002 0.0
> Ahg473970 jgi|Araly1|473970|fgenesh2_kg.1__3924__AT1G48350.1
Length=685
Score = 1002 bits (542), Expect = 0.0
Identities = 625/665 (94%), Gaps = 6/665 (1%)
Strand=Plus/Plus
Query 40 gagccagagagagtgagtaagagagaATGACGAGCGTGAGTGGGTGTGGTTCAGTGAGTC 99
|||| |||| ||| |||| ||| | ||||||||||||||||||||||||||| |||||||
Sbjct 25 GAGCGAGAGCGAGAGAGTGAGATAAAATGACGAGCGTGAGTGGGTGTGGTTCGGTGAGTC 84
Query 100 TGATAACTAACCGCAGTGCGTTCTTGGGAAACGGACTTCAACACCGTGCCGTTTTCCTTA 159
||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| |
Sbjct 85 TGATAACTAACCGCAGTACGTTCCTGGGAAGCGGACTTCAACACCGTGCCGTTTTCCTGA 144
Query 160 AACCATGGTCGTCTTCTTCGCTTCAGTCTCGGTCCATGGTTGTCGAAGCCAAAACCAAAA 219
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 145 AACCATGGTCGTCTTCTTCGCTTCAGTCTCGGTCCATGGTTGTTGAAGCCAAAACCAAAA 204
Query 220 CCAGCAGCGAAGACAGAATCGCCCGCCACTCTCGTATCCGTAAGAAGGTTAATGGTACAA 279
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 205 CCAGCAGCGAAGACAGAATCGCCCGCCATTCTCGTATCCGTAAGAAGGTTAATGGTACGA 264
Query 280 CGGAGAGGCCAAGGCTATGTGTTTTCCGATCAAACAAGCATCTTTATGTTCAAGTGATTG 339
| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 265 CAGAGAGGCCAAGGCTCTGTGTTTTCCGTTCAAACAAGCATCTTTATGTTCAAGTGATTG 324
Query 340 ATGATACCAAGATGCACACCTTAGCTTCAGCTTCCACTAAGCAGAAACCAATCTCTGAAG 399
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 325 ATGATACCAAGATGCACACCTTAGCTTCAGCTTCCACTAAGCAGAAACCTATCTCTGAAG 384
Query 400 AGTTCGACTACACCTCTGGACCAACCATTGAGGTAGCGAAGAAAGTTGGGGAAGTGATAG 459
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 385 AGTTTGACTACACCTCTGGACCAACCATTGAGGTAGCAAAGAAAGTTGGGGAAGTGATAG 444
Query 460 CAAAATCTTGCTTGGAGAAAGGTATCACAAAGGTAGCCTTTGACCGTGGTGGTTACCCTT 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CAAAATCTTGCTTGGAGAAAGGTATCACAAAGGTAGCCTTTGACCGTGGTGGTTACCCTT 504
Query 520 ACCATGGACGTATTGAGGCTCTTGCTGCTGCAGCACGTGAACACGGTCTTCAGTTTTAAC 579
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 505 ACCATGGACGTATTGAGGCTCTCGCTGCTGCAGCACGTGAACACGGTCTTCAGTTCTAAC 564
Query 580 CGTCGTTTTCTTTCCTTGTTTCTTTCCGATGAACAGCAGTGTATGAATGTAGAGAACCCA 639
|||||||| |||||||| || |||| || ||||||| | |||||||||||||||||||
Sbjct 565 CGTCGTTTACTTTCCTTCTTCCTTTATGAGGAACAGC--T-TATGAATGTAGAGAACCCA 621
Query 640 TTTTCCCCAATTGAAATGTTGAGATTTTTCTATAACTATTC-TACA-GCCTAAACCAAGG 697
|||||||| ||||||||||||| ||||||||| || | || || | |||||||||||||
Sbjct 622 TTTTCCCCTATTGAAATGTTGAAATTTTTCTAAAATT-TTGATATAAGCCTAAACCAAGG 680
Query 698 CCCTG 702
|||||
Sbjct 681 CCCTG 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25923583560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5