BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48360.2
Length=2772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473972 jgi|Araly1|473972|fgenesh2_kg.1__3926__AT1G48360.2 3655 0.0
> Ahg473972 jgi|Araly1|473972|fgenesh2_kg.1__3926__AT1G48360.2
Length=2754
Score = 3655 bits (1979), Expect = 0.0
Identities = 2304/2455 (94%), Gaps = 46/2455 (2%)
Strand=Plus/Plus
Query 350 TTCTGAAACTTTTGAATTCAGTTTGGTGCAAAGAAGTGAGCCTAGTGAGTCTATTTGCTG 409
||||||||||| | |||||| |||||||||||||||||| | || ||||||||
Sbjct 314 TTCTGAAACTTCTCAATTCAATTTGGTGCAAAGAAGTGA--C-------TCCATTTGCTG 364
Query 410 CAAGGTTGAAGATGGTTCATGTTCTCCAAGTAGGGAGGAGAG-TTTGAAAACTGTGACTT 468
||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 365 CAAGGCTGAAGATGGTTCATGTTCTCCAAGTAGTGAGGAG-GTTTTGAAAACTGTGACTT 423
Query 469 TAGATGAAGACAATGGTGAGGCTATTGAAACCTTTATAGTTGGTAGGAAGTTCAGTGATG 528
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TAGATGAAGCCAATGGTGAGGCTATTGAAACCTTTATAGTTGGTAGGAAGTTCAGTGATG 483
Query 529 TTCAGGATTTAGAAATTGGGGGTGACATTTTTCTTTTGAGACATCCTGAGAATGTCAAAG 588
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct 484 TTCAGGATTTAGAAATTGGGGGTAACATTTTCCTTTTGAGACATCCTGAGAATGTCAAGG 543
Query 589 ATCGAAACGCTATAAAGGTTATTTCTGGAGACTCTGAAATGCTTGGGTATCTACCTAAAG 648
|||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 544 ATCGCAACGCTATAAAGGTTGTTTCTGCAGACTCTGAAATGCTTGGGTATCTACCTAAAG 603
Query 649 ATATATCCCAGTGCTTGTCCCCGCTGATCGATGACTATGACCTTAAGTTTGAGGGAACGA 708
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 604 ATATTTCCCAGTGCTTGTCCCCGCTGATCGATGACTATGGCCTTAAGTTTGAGGGAACAA 663
Query 709 TAACATCTGTTCCGAAGAAATCTTCTGAAGCTGTTCTGATCAAGGTTGTTTGTCACAAGA 768
||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||
Sbjct 664 TAACATCTGTTCCGAAGAACTCTTCTGAAGCTGTTCCGATCAAAGTTGTTTGTCACAAGA 723
Query 769 TGAGATCTGATGGTTGGAAGGAATGTGAATTGTATGGAGATTTTAAACCTCTTTGGGAGA 828
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 724 TGACATCTGATGGTTGGAAGGAATGTGAATTTTATGGAGATTTTAAACCTCTTTGGGAGA 783
Query 829 AAGTTCTTCAGGTTGTTGAGCATCAGATGCAATTTCCGCCTAAAACAACAAGATATCAGT 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 784 AAGTTCTTCAGGTTGTTGAGCATCAGATGCAATTTCCGCCTAAAACAACAAGATACCAGT 843
Query 889 TGAACTTCAACGTATTACTACAAGAAGTTCTAAGAAGCTGCTCTCACTTATTCACAGCCG 948
|||| |||||||||||||||||||| ||||||||||||||||||||| |||| |||||||
Sbjct 844 TGAATTTCAACGTATTACTACAAGAGGTTCTAAGAAGCTGCTCTCACCTATTTACAGCCG 903
Query 949 ATGAAAAGGCATTCTTGGAATCTTTCCCCACACTTTCAGAGGATAGCCAGAGACTTTTCA 1008
| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 904 AGGAAAGGGCATTCTTGGAATCTTTCCCCACTCTTTCAGAGGATAGCCAGAGACTTTTCA 963
Query 1009 TCCGGCTTTACACACGAAAAGGACCTTGGTTTAGGCTATCAAATATATCATACCCTGAGG 1068
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 964 TCCGGCTTTACACACGAAAAGGACCTTGGTTTAGGCTATCAAATATTTCATACCCTGAGG 1023
Query 1069 TGACTGATTCTCTTCAAGCCCTGAAGGATCTGACAGTCAGGGGATTTATGAGTTCAGTGA 1128
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1024 TGTCTGATTCTCTTCAAGCCCTGAAGGATCTAACAGTCAGGGGATTTATGAGTTCAGTGA 1083
Query 1129 AGGACGCAAATGAACTCGATAACCAAAAGATGAAGGAAATCACAGAGTTGCTTAACGTCA 1188
||||||||| |||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1084 AGGACGCAAGTGAACTAGATCACCAAAAGATGAAGGAGATCACAGAGTTGCTTAACGTCA 1143
Query 1189 CTGAACTTCGTGATATCTTATCTATGAACAAGGTGTTCAGTCGCACCTCAAGAAAGAGAG 1248
||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 1144 CTGAACTCCGTGATATCTTATCTATTAACAAGGTGTTCAGTTTCGGCTCAAGAAAGAGAG 1203
Query 1249 ACCTTATTAATTCTCTTTGTTCTTGTTACAATGATGGAACGAGAATAAATCTAGCAACAG 1308
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1204 ACCTTATTAATTCACTTTGTTCTTGTTACAACGATGGAACGAGAATAAATCTAGCAACAA 1263
Query 1309 TAATTCTAGAAAGAACAGGACTATGTGCTAAGGTATCAAGTACAGCAGAATCTCTCATAT 1368
|||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct 1264 TAATTCTAGAAAGAACAGGACTATGTGCTAAGATATCCAGTACTGCAGAATCTCTCATAT 1323
Query 1369 GGCGCGTTGAGAGGCTTTTCTTCCTCAATGGGGAGCAAGATCTATCGTCTTTTGTTCTGC 1428
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1324 GGCGCGTTGAGAGGCTTTTCTTTCTCAATGGGGAGCAAGATCTATCGTCTTTTGTTCTGC 1383
Query 1429 TGGATCTTGGTATTATCAAATACCCAACTTACAAATGCATTGACTCAGAGCAAATATTCT 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1384 AGGATCTTGGTATTATCAAATACCCAACTTACAAATGCATTGACTCAGAGCAAATATTTT 1443
Query 1489 CGAATCGGACCAAGCTTTTAGCATATGAAGAGGCCATTGAAGTGGCTCAGTTGATGGATG 1548
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 CGAATCGGACTAAGCTTTTAGCATATGAAGAGGCCATTGAAGTGGCTCAGTTGATGGATG 1503
Query 1549 AGTCTCTTGACAATGAGGATCCTCAGACAGTGTTGAAATGCATTATAATTGCTGAAACCC 1608
|||||||||||||||||||| ||| ||||||||||||||| || || |||||||||||||
Sbjct 1504 AGTCTCTTGACAATGAGGATTCTCGGACAGTGTTGAAATGTATCATGATTGCTGAAACCC 1563
Query 1609 GCATATCCAGTTCCTCTTTGGATTCTGCTCACGCTGCTGCATTTAATCGCTTTACAGCTC 1668
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1564 GCATATCCAGTTCTTCTTTGGATTCTGCTCACGCTGCTGGATTTAATCGCTTTACAGCTT 1623
Query 1669 CATGGGTTAACTCAAAGGTGGTTCTCTTAGGAGTTTCCTTTTTTGAGAACCAGAAGAGGT 1728
|||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1624 CATGGGTTTACTCAAAGGTGGTTCTCTTAGGAGTTTCCTTTTTTGAGAACCACAAAAGGC 1683
Query 1729 ACA--ACC---GA------GCA-GTT-T-AT-------CTACTGAGGCGATTGCTCAGCT 1767
| | | | | || ||| | || ||||||||||||||||||||||
Sbjct 1684 ATATTATCTTTGTCTTTTTGCCTGTTGTGATTTTTTATCTACTGAGGCGATTGCTCAGCT 1743
Query 1768 GTTTTAATTGTGATGGGAGACGAGGATACTGGACAGTCAGGTTATCAACGGATTTGGAGC 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 GTTTTAATTGTGATGGGAGACGAGGATACTGGACAGTCAGGTTATCAACGGATTTGGAGC 1803
Query 1828 ACATGGGACGTCCAAATGAGAGTCTTACAGTTGCAGAGCAGGGACTATTGGATCCTTGGG 1887
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1804 ACATGGGACGTCCAAATGAGAGCCTTACAGTAGCAGAGCAGGGACTATTGGATCCTTGGG 1863
Query 1888 TGCGTGCTGGTTCAAGGGTAGCTTTGCAAAGGCGGATTCTTCGTTTGGCAAAACCTCCAA 1947
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1864 TGCGTGCTGGTTCAAGGGTAGCTTTGCAAAGGCGCATTCTTCGTTTGGCAAAACCTCCAA 1923
Query 1948 GACGCTGGAAAACTCCCACTTTTTCAAATCTCGTCGACAACAAGATCCCCGAGGTTACTA 2007
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1924 GACGCTGGAAAACTCCCACTTTTTCAAATCTCGTCGAAAACAAGATCCCCGAGGTTACTA 1983
Query 2008 TTCAAGGGAGATCACTGAACTGTGAAGTTGGCATAAAAAATAGGTTTTATGGAGAAGATG 2067
||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |
Sbjct 1984 TTCAAGGGAGATCACTGAATTGTGAAGTTGGCATGAAAAACAGGTTTTATGGAGAAGACG 2043
Query 2068 GAGAACAATGTGGAGTGGAGCAGCTCGCATTGCAGTATTACAGTGGAGAAGGAGGAGGAT 2127
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 2044 GAGAACAATGTGGAGTCGAGCAGCTTGCATTGCAGTATTACAGTGGAGAAGGAGGA---T 2100
Query 2128 GGCAAGGAATTCATACAGAGAGTAGTATCTGGTTAACGATTTTCGGGCTTCTCATGTGGG 2187
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2101 GGCAAGGAATTCATACAGAGAGTAGCATCTGGTTAACGATTTTCGGGCTTCTCATGTGGG 2160
Query 2188 ATATTCTATTTTCCGATGTCCCTGGCGTTTTCCAAACCCGATTCCAGACTGCTCCACTGG 2247
| ||||||||||||||||| || || |||||||||||||||||||||||||||||| |||
Sbjct 2161 ACATTCTATTTTCCGATGTACCGGGTGTTTTCCAAACCCGATTCCAGACTGCTCCATTGG 2220
Query 2248 ACTTAGAGACTGAATCCTTCTATCTAACCAGGAAGGAAACAATAGAATCTCAGCTCGAAA 2307
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 2221 ACTTAGAGACTGAATCCTTCTATCTAACCAGGAAAGAAACAATAGAGTCTCAGCTCGAAA 2280
Query 2308 AAGTCGCAAATGGAATGGCTGAAGAAATACTAATCATATCATATGAAACACAACGTGGAA 2367
|||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2281 AAGTTGCGAACGGAATGGCTGAAGAAATACTAATCATATCATATGAAACACACCGTGGAA 2340
Query 2368 CAGCGTGCAGAGGAGTGGCTTGGGAGCGGTTTTCGTTAGAGGAACTGAGAGCAGCAGTGG 2427
|||| |||||||||||||||||||| || |||| |||||||||| |||||||||||||||
Sbjct 2341 CAGCATGCAGAGGAGTGGCTTGGGATCGATTTTTGTTAGAGGAATTGAGAGCAGCAGTGG 2400
Query 2428 CTTGTGTTGGAGGTATGTGTATAGCATCGCTGTGCCGGCATTTAGCTCAAGACTATAGGA 2487
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2401 CTTGTGTTGGAGGTGTGTGTATAGCATCGCTGTGCCGGCATTTAGCTCAAGACTATAGGA 2460
Query 2488 GCTGGTGCAGTGGAATGCCTGATCTACTGGTATGGCGGTTCAAGGAGAATGGTTATGAAG 2547
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2461 GCTGGTGCAGTGGAATGCCTGATCTACTGCTATGGCGGTTCAAGGAGAATGGTTATGAAG 2520
Query 2548 GTGAAGCTAAGCTTGTGGAAGTGAAATCAGAGAAAGATAGGTTATCAGAACAGCAAAGAG 2607
|||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||
Sbjct 2521 GTGAAGCTAAGCTTGTGGAAGTTAAATCAGAGAGAGATAGGTTATCAGAACAACAAAGAG 2580
Query 2608 CTTGGCTTCTACTTCTAATGGATTCAGGCTTTAATGTTGAGATTTGCAAAGTAAGACCTG 2667
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2581 CTTGGCTTCTACTTCTAATGGATTCAGGCTTTAATGTTGAGATTTGCAAAGTGAGACCTG 2640
Query 2668 CTTCTTTAATTAAAACTTAATTATCCAAATTAAAAGGA---G-A-A----CACACGATTT 2718
||||||||| |||||||||||||| ||||||||||||| | | | ||||||||||
Sbjct 2641 CTTCTTTAACTAAAACTTAATTATACAAATTAAAAGGATTTGTACAATAACACACGATTT 2700
Query 2719 GTCGGATAGTTACt-ttttttctttttttCTTTATGCAAAAGTGATTTGTTTTTT 2772
|| ||||||||||| |||||| |||||||||||||||||||| ||||||||||||
Sbjct 2701 GTTGGATAGTTACTGTTTTTT-TTTTTTTCTTTATGCAAAAGGGATTTGTTTTTT 2754
Score = 448 bits (242), Expect = 1e-124
Identities = 292/316 (92%), Gaps = 4/316 (1%)
Strand=Plus/Plus
Query 1 ATCGGCAGGAAATGCTCACCGGACGGGAGAGTTTGCTCCGGTTGATTGGAAAGCGCCGGC 60
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1 ATCGGCAGGAAATGCTCACCGGACGGGAGAGCTTGCTCCGGTTGATTGGAAAACGCCGGC 60
Query 61 GATTTCTCCCCAATCGCCACCTTCTTCTCTCCGCTCATACTCCGAATTCGTTAAATCTCG 120
||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 61 GATATCTCCCCAATCGCCACCTTCTTCTCTCCGCTCCTACTCCGAATTCGTTGAATCTCG 120
Query 121 AGTTCAACGACTATGGCAATCTTGTCTCATTAGCCGGAGATGATTGTCGTT-TATCAGAG 179
|| |||||||| ||||||||||| |||||||||||||||||||| || || | || ||
Sbjct 121 AGGTCAACGACGATGGCAATCTTATCTCATTAGCCGGAGATGATGGT-ATTCTGTCGGAT 179
Query 180 GATCCGACTTCT-TCAGATGACCCGAGTAAATTCTCTGATGATTTGAGTTTATCCACGAG 238
||||| || || || ||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 180 AATCCGGCTCCTCTC-GATGACCCGAGCAAATTCTCTGATGATTTGAGTCTATCCACGAG 238
Query 239 GAAGAAACGGAGATTAACTCAGACCACTCTTCTTCAGTCAAGTTTCTTGTCAGTGCCAAA 298
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 239 GAAGAAACGGAGATTAACTCAGACCACTCTTCTTCAGTCAAATTTCTGGTCAGTGCCAAA 298
Query 299 ACAATTAGAAGATGGT 314
||||||||||||||||
Sbjct 299 ACAATTAGAAGATGGT 314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104595812770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5