BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48370.1
Length=2364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473974 jgi|Araly1|473974|fgenesh2_kg.1__3928__AT1G48370.1 3727 0.0
Ahg479246 jgi|Araly1|479246|fgenesh2_kg.3__1947__AT3G17650.1 1857 0.0
Ahg936422 jgi|Araly1|936422|scaffold_500613.1 91.6 2e-17
> Ahg473974 jgi|Araly1|473974|fgenesh2_kg.1__3928__AT1G48370.1
Length=2345
Score = 3727 bits (2018), Expect = 0.0
Identities = 2253/2364 (95%), Gaps = 25/2364 (1%)
Strand=Plus/Plus
Query 1 TCTTGTTCACCATCTCTCTTATTTCGCAGATCTAAAGAGaaaaaaaCCATGAGAAAAGGA 60
||||||||||||||||||| ||||||||||||||||||| | || ||||||||| |||
Sbjct 1 TCTTGTTCACCATCTCTCTCATTTCGCAGATCTAAAGAG---ACAATCATGAGAAAGGGA 57
Query 61 GGTTTAACTCCTGACAGAGATCGTCAGATTGAGGAACATGAGTTGCAAGAAACTGGGATA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TCTTTAACTCCTGACAGAGATCGTCAGATTGAGGAACATGAGTTGCAAGAAACTGGGATT 117
Query 121 AGTCCTGACATAGAGAGGTTAAAGAGGAACATTAATGCTACACCATACCAaagagaagaa 180
|||||||||| |||||| || |||||||||| |||| | || ||||||||||||||||
Sbjct 118 AGTCCTGACACAGAGAGATTTAAGAGGAACAAGAATGTTGGACAATACCAAAGAGAAGAA 177
Query 181 gaggaagaagatagagaggaacaggaagaaTCCGTGGAGGGAATATTCGAAAGCAGAGAG 240
|||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 178 GAGGAAGAAGATGGAGAGGAACAGGAAGAATCTGTGGAGGGAATATTCGAGAGCAGAGAG 237
Query 241 GTTCCTTCGTGGAAGAAGCAGTTAACAATTAGGGCTTTTGTGGTTAGCTTTGCGCTAAGC 300
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 238 GTTCCTTCGTGGAAGAATCAGTTAACGATTAGGGCTTTTGTGGTTAGCTTTGCGCTAAGC 297
Query 301 ATTTTGTTTAGCTTCATTGTGATGAAGCTTAACCTCACAACAGGAATCATTCCTTCGCTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATTTTGTTTAGCTTCATTGTGATGAAGCTTAACCTCACAACAGGAATCATTCCTTCGCTT 357
Query 361 AATGTATCTGCTGGTCTTTTGGGGTTCTTCTTCGTCAAGACATGGACTAAGATGCTTCAT 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AATGTCTCTGCTGGTCTTTTGGGGTTCTTCTTCGTCAAGACATGGACTAAGATGCTTCAT 417
Query 421 AAATCTGGTCTTTTGAAACAGCCCTTTACAAGACAAGAGAACACCGTTATTCAGACTTGT 480
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 418 AAATCTGGTCTTTTGAAACAACCCTTTACCAGACAAGAGAACACCGTTATTCAGACTTGT 477
Query 481 GTAGTTGCTTCCTCAGGAATTGCCTTTAGCGGAGGATTTGGGACTTACCTATTTGCAATG 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GTTGTTGCTTCCTCAGGAATTGCCTTTAGCGGAGGATTTGGGACTTACCTATTTGCAATG 537
Query 541 AGCCATCGAATAGCAGACCAATCAGGAGACGTTGCCCGTGGCGTTAAGGATCCTTCATTG 600
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGCCAACGAATAGCTGACCAATCAGGAGACGTTGCCCGTGGCGTTAAGGATCCTTCATTG 597
Query 601 GGTTGGATGATAGCTTTTCTCTTTGTTGTCAGCTTTCTTGGCCTCTTCTCTGTTGTTCCT 660
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGTTGGATTATAGCTTTCCTCTTTGTTGTCAGCTTTCTTGGCCTCTTCTCTGTTGTTCCT 657
Query 661 CTTAGAAAGATAATGATAATAGACTTCAAACTACCATACCCAAGTGGCACTGCAACTGCT 720
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 658 CTTAGAAAGATAATGATAATAGACTTCAAACTACCATACCCTAGTGGCACTGCAACTGCT 717
Query 721 CATCTTATCAACAGCTTTCATACTCCTCAAGGGGCAAAGCTAGCCAAGAAACAAGTCCGA 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CATCTTATCAACAGTTTTCATACTCCTCAAGGGGCAAAGCTAGCCAAGAAACAAGTCCGA 777
Query 781 GTCTTGGGGAAATTCTTCTCCTTCAGCTTCTTTTGGGGTTTCTTCCAATGGTTCTTTACT 840
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTGTTGGGGAAATTCTTCTCCTTCAGCTTCTTTTGGGGTTTCTTCCAATGGTTCTTTACT 837
Query 841 GCAGGTGAAAATTGTGGGTTTAACAGCTTCCCTACTTTTGGACTCAGAGCTTACCAATAT 900
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 838 GCAGGTGAAAATTGTGGGTTTAACAGTTTCCCTACTTTTGGACTCAGAGCTTACCAATAT 897
Query 901 AAGTTCTACTTTGATTTTTCTGCAACATATGTGGGTGTTGGTATGATATGCCCATACATA 960
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAGTTCTACTTTGATTTTTCAGCAACATATGTGGGTGTTGGTATGATATGCCCATACATA 957
Query 961 ATCAACATCTCTCTTCTATTGGGTGGAATTCTCTCTTGGGGACTAATGTGGCCTCTCATT 1020
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 958 ATCAACATCTCTCTTTTATTGGGTGGAATTCTCTCTTGGGGACTAATGTGGCCACTCATT 1017
Query 1021 GAAACCAGAAAAGGAGATTGGTTCCCTTCTAATGTTGACTCTAGCAGCATGAACGGTCTT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GAAACCAGAAAAGGAGATTGGTTCCCTTCTAATGTTGACTCTAGCAGCATGAACGGTCTT 1077
Query 1081 CAGGCTTACAAGGTGTTCATAGCTGTCGCTACGATCCTAGGAGATGGTCTATACAACTTT 1140
|| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1078 CAAGCTTACAAGGTGTTCATAGCTGTCGCTATGATCCTAGGAGATGGTTTATACAACTTT 1137
Query 1141 TGCAAGGTGTTG-ATCCGAACCTTTTCAGGACT-GATCTCGCAGATCCGAGGTAAAGCTG 1198
|||||||||||| | ||||||| |||||||| | | |||||||||||||||||||||| |
Sbjct 1138 TGCAAGGTGTTGTA-CCGAACCCTTTCAGGATTAG-TCTCGCAGATCCGAGGTAAAGC-G 1194
Query 1199 G-TTCGAGAAGCTCTCTTGCACACAAAGAAGACCCTCCTGCTTCCCCTGCTTCCCCATTG 1257
| |||||||| ||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1195 GATTCGAGAACCTCTCTTGCACACGAAGAAGACCCTCCTGCTTCCCC---------ATTG 1245
Query 1258 ACCCC-AAGGATATCTTATGATGACCAACGACGAACAAGATTCTTCCTCAAGGATCAAAT 1316
||||| ||| ||||||||||| |||||| ||||||||||||||||||| ||||| |||||
Sbjct 1246 ACCCCGAAG-ATATCTTATGACGACCAAAGACGAACAAGATTCTTCCTGAAGGACCAAAT 1304
Query 1317 ACCGTCTTGGTTTGCTGTTGGAGGCTATGTGGTTATATCTGCAGTGTCTACAGCTATACT 1376
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1305 ACCTTCTTGGTTTGCTGTTGGAGGCTATGTGGTTATATCTGCAGTATCTACAGCTATACT 1364
Query 1377 TCCTCACATGTTCTCTCAGCTGAGATGGTACTACATTATAGTCATCTATATCTTTGCTCC 1436
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1365 TCCTCACATGTTCTCTCAGCTGAGATGGTACTACATTATAGTCATCTATGTCTTTGCTCC 1424
Query 1437 TATCTTAGCTTTCTGCAATGCTTACGGAGCCGGGCTCACTGATTGGTCGCTAGCATCAAC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 TATCTTAGCTTTCTGCAATGCTTACGGAGCCGGGCTCACTGATTGGTCGCTAGCATCAAC 1484
Query 1497 CTATGGAAAGCTTGCCATATTTACAATTGGAGCATGGGCTGGTTCGGATCATGGAGGTCT 1556
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1485 CTATGGAAAGCTTGCCATATTTACGATTGGAGCATGGGCTGGTTCGGATCATGGAGGTCT 1544
Query 1557 TCTGGCAGGCTTAGCGGCTTGTGGAGTCATGATGAATATAGTATCGACAGCTTCAGACCT 1616
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1545 TCTGGCAGGCTTAGCGGCTTGTGGAGTCATGATGAACATAGTATCGACAGCTTCAGACCT 1604
Query 1617 GACGCAGGATTTCAAAACTGGTTACCTAACATTGTCATCTCCAAGAGCCATGTTTGTGAG 1676
|| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1605 CACACAGGATTTCAAGACTGGCTACCTGACATTGTCATCTCCAAGAGCCATGTTTGTGAG 1664
Query 1677 CCAGGTAATTGGAACAGCTATGGGCTGCTTGGTTTCACCCTGCGTATTCTGGCTTTTCTA 1736
|||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1665 CCAGGTGATTGGAACAGCTATGGGCTGCTTGGTTTCACCCTGCGTGTTCTTGCTTTTCTA 1724
Query 1737 CAAGGCGTTTGATGATCTTGGTCTACCAAACAGTGAATACCCTGCTCCGTTTGCTACTGT 1796
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1725 CAAGGCGTTTGATGATCTTGGCCTTCCAAACAGTGAATACCCTGCTCCGTTTGCTACTGT 1784
Query 1797 GTACCGAAGTATGGCTAAACTCGGGGTTGAAGGCGTCTCGTCTCTACCAAGAGACTGTCT 1856
|||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1785 GTACCGGAGTATGGCTAAACTCGGGGTTGAAGGTGTCTCGGCTCTACCAAGAGACTGTCT 1844
Query 1857 TATGCTGTGCTACGT-GTTTTTCGGTGTGGCCATACTCATTAACTTAATAAAAGATTGTC 1915
| ||||||||||| | |||||||||||| ||| |||||||||| |||||||||| |||
Sbjct 1845 TGTGCTGTGCTAC-TCGTTTTTCGGTGTAGCCGGACTCATTAACCTAATAAAAGACGGTC 1903
Query 1916 TTGGTAACAGGTGGGGAAGGTTTGTTCCTCTTCCCATGGCAATGGCTATACCGTTTTTCT 1975
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1904 TTGGTGACAGGTGGGGAAGGTTTGTTCCTCTTCCCATGGCAATGGCTATACCGTTTTTCT 1963
Query 1976 TGGGGCCTTACTTTGCAATTGACATGTGCGTGGGGAGTTTTATTTTGTTTGTCTGGGAGA 2035
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1964 TAGGACCTTACTTTGCAATTGACATGTGCGTGGGGAGTTTGATTTTGTTTGTCTGGGAGA 2023
Query 2036 GGTTAGATGCGCCAAAGGCTGAAGCATTTGCAACAGCAGTGGCTTCTGGTTTGATATGTG 2095
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2024 GGTTAGATGCGCCAAAGGCTGAAGCTTTTGCAACAGCAGTGGCTTCTGGTTTGATATGTG 2083
Query 2096 GAGATGGAATCTGGACTTTGCCAAGTTCAGTGCTTGCTATAGCTGGAGTTAAACCTCCTA 2155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2084 GAGATGGAATCTGGACTTTGCCAAGTTCAGTGCTTGCTATAGCTGGAGTTAAACCTCCTA 2143
Query 2156 TTTGCATGAAGTTTCTTTCAGCTGCAACTAATCACAGAGTCGACAAGTTCCTGCAAGGAT 2215
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2144 TTTGCATGAAGTTTCTCTCAGGTGCAACTAATCACAGAGTCGACAAGTTCCTGCAAGGAT 2203
Query 2216 CCTCTTAGtttttttttAAG-CTAAATGAGATGGATCTGTTGAGAAGTAAAGTGTTAGtt 2274
| |||||| |||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 2204 CATCTTAGATTTTTT--AAGGCTTAATGAGATGGATCTGTTGAGAAGTAAAGTGTTAGTG 2261
Query 2275 tttttAAAGCTCAATGAGATGGATCTGTTGAAGAAGTAAAGTGTAATGATGATTCAGTTT 2334
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 2262 TTTTTAAAGCTCAATGAGATGGATCTGTTGAAGAAGTAAATTGTAATGATGTTTCAGTTT 2321
Query 2335 TGAAAACAATGATAAGAGGTATAT 2358
||||||||||||||| ||||||||
Sbjct 2322 TGAAAACAATGATAAAAGGTATAT 2345
> Ahg479246 jgi|Araly1|479246|fgenesh2_kg.3__1947__AT3G17650.1
Length=2367
Score = 1857 bits (1005), Expect = 0.0
Identities = 1733/2077 (83%), Gaps = 79/2077 (4%)
Strand=Plus/Plus
Query 184 gaagaagatag-agaggaacaggaagaaTCCGTGGAGGGA-ATATTCGAAAGCAGAGAGG 241
||||||||| | ||||||| |||| ||||| ||||| | | || || || || ||||| |
Sbjct 217 GAAGAAGAT-GAAGAGGAAGAGGATGAATCTGTGGA-GAAGATCTTTGAGAGTAGAGAAG 274
Query 242 TTCCTTCGTGGAAGAAGCAGTTAACAATT-AGGGCTTTTGTGGTTAGCTTTGCGCTAAGC 300
| |||||||||| ||||||||| || || |||||||||||||| |||||| |||||||
Sbjct 275 TACCTTCGTGGACGAAGCAGTTGAC-GTTGAGGGCTTTTGTGGTGAGCTTTATGCTAAGC 333
Query 301 ATTTTGTTTAGCTTCATTGTGATGAAGCTTAACCTCACAACAGGAATCATTCCTTCGCTT 360
|| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 334 ATCTTGTTTAGCTTCATTGTTATGAAGCTTAACCTCACAACGGGAATCATACCTTCGCTC 393
Query 361 AATGTATCTGCTGGTCTTTTGGGGTTCTTCTTCGTCAAGACATGGACTAAGATGCTTCAT 420
||||| |||||||||||| |||| |||||||| |||||||| ||||| |||||||| |||
Sbjct 394 AATGTCTCTGCTGGTCTTCTGGGTTTCTTCTTTGTCAAGACGTGGACCAAGATGCTCCAT 453
Query 421 AAATCTGGTCTTTTGAAACAGCCCTTTACAAGACAAGAGAACACCGTTATTCAGACTTGT 480
| |||||||| ||||||||||| ||||| | || ||||| || ||||||||||| |||
Sbjct 454 AGGTCTGGTCTCTTGAAACAGCCATTTACTCGCCAGGAGAATACTGTTATTCAGACCTGT 513
Query 481 GTAGTTGCTTCCTCAGGAATTGCCTTT-AGCGGAGGATTTGGGACTTACCTATTT-GCAA 538
|| |||||||| || || |||| |||| |||||||| |||||||| ||||| ||| || |
Sbjct 514 GTTGTTGCTTCTTCTGGCATTG-CTTTCAGCGGAGGGTTTGGGACATACCTCTTTGGC-A 571
Query 539 TGAGCCATCGAATAGCAGA-CCAATCAGGAGACGTTGCCCGTGGCGTTAAGGATCCTTCA 597
|||| | |||| || || |||||||||||| ||| | |||||||| ||||| |||||
Sbjct 572 TGAGTGAAAGAATTGC-GACCCAATCAGGAGATGTTTCTCGTGGCGTCAAGGACCCTTCT 630
Query 598 TTGGGTTGGATGATAGCTTTTCTCTTTGTTGTCAGCTTTCTTGGCCTCTTCTCTGTTGTT 657
||||||||||| || | ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 631 TTGGGTTGGATTATCGGTTTCCTCTTTGTTGTCAGCTTTCTTGGCCTCTTCTCAGTTGTT 690
Query 658 CCTCTTAGAAAGATAATGATAATAGACTTCAAACTACCATACCCAAGTGGCACTGCAACT 717
|| || |||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 691 CCCCTGAGAAAGATAATGGTAATAGACTTCAAACTAACATACCCAAGTGGCACTGCAACA 750
Query 718 GCTCATCTTATCAACAGCTTTCATACTCCTCAAGGGGCAAAGCTAGCCAAGAAACAAGTC 777
||||||||||||||||||||||| || |||||||| || ||||||||||||||||||||
Sbjct 751 GCTCATCTTATCAACAGCTTTCACACCCCTCAAGGCGCCAAGCTAGCCAAGAAACAAGTG 810
Query 778 CGAGTCTTGGGGAAATTCTTCTCCTTCAGCTTCTTTTGGGGTTTCTTCCAATGGTTCTTT 837
| || || |||||||| ||||| || |||||||| ||| ||||||||||||||||||||
Sbjct 811 AGGGTGTTAGGGAAATTTTTCTCTTTTAGCTTCTTCTGGAGTTTCTTCCAATGGTTCTTT 870
Query 838 ACTGCAGGTGAAAATTGTGGGTT-TAACAGCTTCCCTACTTTTGGACTCAGAGCTTACCA 896
|| | ||| |||||||||||||| | || |||||| || |||||||||| |||||||||
Sbjct 871 ACCGGAGGAGAAAATTGTGGGTTCTC-CAACTTCCCAACATTTGGACTCAAAGCTTACCA 929
Query 897 ATATAAGTTCTACTTTGATTTTTCTGCAACATATGTGGGTGTTGGTATGATATG-CCCAT 955
|| |||||||||||||||||||| ||||||||||| |||||||| |||||||| ||| |
Sbjct 930 GTACAAGTTCTACTTTGATTTTTCAGCAACATATGTTGGTGTTGGAATGATATGTCCC-T 988
Query 956 ACATAATCAACATCTCTCTTCTATTGGGTGGAATTCTCTCTTGGGG-ACTAATGTGGCCT 1014
| ||||||||||||||| | |||||||| ||||| ||||||||||| | ||||||||||
Sbjct 989 ATATAATCAACATCTCTGTCCTATTGGGAGGAATCCTCTCTTGGGGGA-TAATGTGGCCC 1047
Query 1015 CTCATTGAAACCAGAAAAGG-AGATTGGTTCCCTTCTAATGTTG-ACTCTAGCAGCATGA 1072
||||||||||||| |||||| ||||||||||||| |||||| | || |||||||||
Sbjct 1048 CTCATTGAAACCA-AAAAGGGAGATTGGTTCCCTGATAATGTCCCA-TCCAGCAGCATGC 1105
Query 1073 ACGGTCTTCAGGCTTACAAGGTGTTCATAGCTGTCGCTACGATCCTAGGAGATGGTCT-A 1131
| ||||| || |||||||||||||| |||||||| |||| |||||||||||||| || |
Sbjct 1106 ATGGTCTCCAAGCTTACAAGGTGTTTATAGCTGTTGCTATAATCCTAGGAGATGG-CTTA 1164
Query 1132 TACAACTTTTGCAAGGTGTTGATCCGAAC-CTTTTCAGGACTGATCTCG--CAGATCCGA 1188
|||||||||||||||||| ||| ||| || |||| ||||||| || | | ||| |||||
Sbjct 1165 TACAACTTTTGCAAGGTGCTGAGCCGGACTCTTT-CAGGACT-ATTT-GTACAGCTCCGA 1221
Query 1189 GG---TA--A-AGCTGGTTCGAGAAGCTCTCTTGCACACA--AAGAAGACCCTCCTGCTT 1240
|| || | | || ||| |||| ||| ||| ||||| |||||||||||| |||||
Sbjct 1222 GGCCCTACTACATCTATTTCAAGAACCTC-CTT-CACACTTGAAGAAGACCCTCATGCTT 1279
Query 1241 CCCCTGCTTCCCCATTGACCCCAAGGATATCTTATGATGACCAACGACGAACAAGATTCT 1300
|||| || | | ||| ||| | |||||||||||||||||| || ||||||||||
Sbjct 1280 CCCCA--TTA---A--G-CCCAAAGCA-ATCTTATGATGACCAACGTCGTACAAGATTCT 1330
Query 1301 TCCTCAAGGATCAAATACCGT-CTTGGTTTGCTGTTGGAGGCTATGTGGTTATATCTGCA 1359
||||||| || ||||| || | ||||||||||||||||||| ||| | ||| |||||
Sbjct 1331 TCCTCAAAGACCAAATCCC-TACTTGGTTTGCTGTTGGAGGTTATATCACAATAGCTGCA 1389
Query 1360 GTGTCTACAGCTATACTTCCTCACATGTTCTCTC-AGCTGAGATGGTACTACATTATAGT 1418
|||||||| ||||| |||||||||||| | | ||||||||||||| |||||| | ||
Sbjct 1390 ACATCTACAGCGATACTCCCTCACATGTTC-CACCAGCTGAGATGGTATTACATTCTGGT 1448
Query 1419 CATCTATATCTTTGCTCCTATCTTAGCTTTCTGCAATGCTTACGGAGCCGGGCTCACTGA 1478
|||||||||| ||| ||| |||| ||||||||||| ||||| ||||| || ||||| ||
Sbjct 1449 TATCTATATCTGTGCGCCTGTCTTGGCTTTCTGCAACGCTTATGGAGCTGGACTCACAGA 1508
Query 1479 TTGGTCGCTAG-CATCAACCTATGGAAAGCTTGCCATATTTACAATTGGAGCATGGGCTG 1537
||||| || | | ||||| |||||||||||||||||||| |||||||| || |||||||
Sbjct 1509 CTGGTC-CTTGGCTTCAACGTATGGAAAGCTTGCCATATTCACAATTGGGGCTTGGGCTG 1567
Query 1538 GTTCGGATCATGGAGGTCTTCTGGCAGG-CTTAGCGGCTTGTGGAGTCATGATGAATATA 1596
| || || || || ||| | ||||| || || || || ||||| ||||||||||| |||
Sbjct 1568 GCTCTGAGCACGGTGGTATGCTGGCTGGTCTG-GCAGCATGTGGTGTCATGATGAACATA 1626
Query 1597 GTATCGACAGCTTCAGACCTGACGCAGGATTTCAAAACTGGTTACCTAACATTGTCATCT 1656
|| ||||| ||||| || ||||| || || ||||| || |||||||| || || ||||||
Sbjct 1627 GTCTCGACGGCTTCGGATCTGACACAAGACTTCAAGACAGGTTACCTCACTTTATCATCT 1686
Query 1657 CCAAGAGCCA-TGTTTGTGAGCCAGGTAATTGGAACAGCTATGGGCTGCT-TGGTTTCAC 1714
|||| || || ||||||||||||| || ||||||||||| ||||| || | |||| || |
Sbjct 1687 CCAA-AGTCAATGTTTGTGAGCCAAGTGATTGGAACAGCGATGGGTTG-TGTGGTATCTC 1744
Query 1715 CCTGCGTATTCTGGCTTTTCTACAAGGCGTTTGATGATCTT-GGTCTACCAAACAGTGAA 1773
| ||||| |||||||| |||||||| |||||||||||| || || || ||||||| ||||
Sbjct 1745 CTTGCGTGTTCTGGCTATTCTACAAAGCGTTTGATGAT-TTAGGCCTCCCAAACACTGAA 1803
Query 1774 TACCCTGCTCCGTTTGCTACTGTGTACCGAAGTATGGCTAAACTCGGGGTTGAAGGCGTC 1833
||||||||||| |||||||| || || ||||||||||||||||| || || ||||| |||
Sbjct 1804 TACCCTGCTCCATTTGCTACCGTATATCGAAGTATGGCTAAACTAGGAGTGGAAGGTGTC 1863
Query 1834 TCGTCTCTACCAAGAGACTGTCTTATGCTGTGCTACGTGTTTTTCGGTGTGGCCATACTC 1893
| |||||||| ||||| ||||| | || ||||||| ||| ||||||||||| || ||
Sbjct 1864 GCATCTCTACCGAGAGAATGTCTCGTTCTATGCTACGCGTTCTTCGGTGTGGCGATTCT- 1922
Query 1894 ATTAA-CTTAATAAAAGATTGTCTTG-GTAAC-AGGTGGGGAAGGTTTGTTCCTCTTCCC 1950
| ||| | || |||||||| |||| | | | | ||||||||||| |||| |||||
Sbjct 1923 AGTAAACATAGTAAAAGATAGTCTCCAG-AGCCAA-TGGGGAAGGTTCATTCCACTTCCA 1980
Query 1951 ATGGCAATGGCTATACCGTTTTTCTTGGGGCCTTACTTTGCAATTGACATGTGCGTGGGG 2010
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1981 ATGGCAATGGCTATACCGTTTTTCTTGGGACCTTACTTTGCAATTGACATGTGTGTGGGA 2040
Query 2011 AGTTTTATT-TTGTTTGTCTGGGAGAG-GTTAGATGC-GCCAAAGGCTGAAGCATTT-GC 2066
||||| || || ||| ||||||| || || |||||| ||||| ||||||||| ||| |
Sbjct 2041 AGTTTGATACTT-TTTATCTGGGAAAGAGT-AGATGCAGCCAA-GGCTGAAGC-TTTCGG 2096
Query 2067 AACAGCAGTGGCTTCTGGTTTGATATGTGGAGATGGAATCTGGACTTTGCCAAGTTCAGT 2126
|||||||||||||||||||||||||| |||||||| || ||| |||||||||| |||||
Sbjct 2097 GACAGCAGTGGCTTCTGGTTTGATATGCGGAGATGGCATTTGGTCTTTGCCAAGCTCAGT 2156
Query 2127 GCTTGCTATAGCTGGAGTTAAACCTCCTATTTGCATGAAGTTTCTTTCAGCTGCAACTAA 2186
||| |||||||| ||||| || |||||| |||||||||||||||| || |||||||| ||
Sbjct 2157 GCTCGCTATAGCCGGAGTCAACCCTCCTGTTTGCATGAAGTTTCTCTCTGCTGCAACCAA 2216
Query 2187 T-CACAGAGTCGACAAGTTCCTGCAAGGATCCTCTTA 2222
| || || |||||||| ||| | ||||||||| ||||
Sbjct 2217 TTCAAAG-GTCGACAACTTCTTACAAGGATCCACTTA 2252
> Ahg936422 jgi|Araly1|936422|scaffold_500613.1
Length=2076
Score = 91.6 bits (49), Expect = 2e-17
Identities = 72/82 (88%), Gaps = 5/82 (6%)
Strand=Plus/Plus
Query 443 CCTTT-AC-AAGACAAGAGAACACCGTTATTCAGACTTGTGTAGTTGCTTCCTCA-GGAA 499
||||| || || |||||||||||||||||||||||||||||| ||||||| || | ||
Sbjct 316 CCTTTCACTAA-ACAAGAGAACACCGTTATTCAGACTTGTGTTGTTGCTTGCT-ATGGCC 373
Query 500 TTGCCTTTAGCGGAGGATTTGG 521
||||||| ||||||||||||||
Sbjct 374 TTGCCTTCAGCGGAGGATTTGG 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89054992810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5