BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48380.2
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473976 jgi|Araly1|473976|fgenesh2_kg.1__3930__AT1G48380.1 911 0.0
> Ahg473976 jgi|Araly1|473976|fgenesh2_kg.1__3930__AT1G48380.1
Length=1308
Score = 911 bits (493), Expect = 0.0
Identities = 688/773 (89%), Gaps = 50/773 (6%)
Strand=Plus/Plus
Query 679 TCAGGCAGAG-AATACTGAGTTTGATTTCCAAGGCGGTGCTGGAGGAGCAGCTTCGGTGA 737
|||||||||| || || ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 581 TCAGGCAGAGCAA-ACAGAGTTTGATTTCCAAGGCGGTGCAGGAGGAGCAGCTTCGGTCA 639
Query 738 AGAAGCTGGCGAGTCCTGAAATTGGTAGCCAACCAACAGAGACAGACTCACCTGAAGTTG 797
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 640 AGAAGCTGGCGACTCCTGAAACTGGTAGCCAACCAACAGAGACAGACTCACCTGAAGTTG 699
Query 798 ACAACGAGGATGTTTTGTCTGAGGATGGAGAATTCTTGGACGATAAGATCCAAGTAACAC 857
||| |||||||||||||||||||||||||||||| ||||||||||||| || | | |
Sbjct 700 ACATGGAGGATGTTTTGTCTGAGGATGGAGAATTCCTGGACGATAAGATTGAACT-A-A- 756
Query 858 CACCAGTTCAATTAACACCACCAGTCCAAGTAACTCCGGTCCGACAGTCTCAGAGAAATT 917
|||||| || | |||| | || || || ||| | | ||||||||||||||||
Sbjct 757 CACCAG-TCCA--AACA--A-CA--CC-AG----TCC-G---G-CAGTCTCAGAGAAATT 798
Query 918 CTGGGAAGAAATTCAACTTTGCAGAAACTTCCTCAGAGGCCTCCTCTGGTGAAAGTGAAG 977
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 799 CTGGGAAGAAATTCAACTTTGCAGAAACTTCCGCAGAGGACTCCTCTGGTGAAAGTGAAG 858
Query 978 GCAATACATCTGATGAAGATGAGAAACCTCTGTTGGAACCTGAATCTTCAACAAGAAGTC 1037
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 859 GCAATACATCTGATGAAGATGAGAAACCTATGTTGGAACCTGAATCTTCAACAAGAGGTC 918
Query 1038 GTGAGGAATCTCAAGATGGTAATGGTATTACTGCATCTGCAAGCAAGTTGCCTGA-AGAA 1096
||||||||||||||||||||| | || | ||||| ||||||||||||||| | ||||
Sbjct 919 GTGAGGAATCTCAAGATGGTA-T--TAC-A--GCATCAGCAAGCAAGTTGCCT-ACAGAA 971
Query 1097 CTTCCGGCTA-AAAGGGAAAAACTAAAGAGCAAAGACAGTAAGCTCGTTCAAGCTACTTT 1155
||||| || | ||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 972 CTTCCAGCAAGAAAGG-AAAAACCAAAGAGCAAAGACAGTAAGCTCGTTCAAGCTACTGT 1030
Query 1156 GTCTAACCTTTTCAAGAAAGCTGAGGAGAAAACAGCTGGAACTTCCAAGGCTAAATCATC 1215
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1031 GTCTAACCTTTTCAAGAAAGCTGAGGAGAAAACAGCTGGAACGTCCAAGGCGAAATCATC 1090
Query 1216 CTCAAAAGCTTAAAGAAA-TCTTTTCCAGAAGAAAATAGAGGTCTGTTGTTTCTTT-GCT 1273
|||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1091 TTCAAAAGCTTAA-GAAACTCTTTTCCAGAAGAATATAGAGGTCTGTTGTTTCTTTTGCT 1149
Query 1274 GTGAGAATGAACAGTTTTTAGTTCTTTTAGGTATGTTTGTGTGAGAAATTGCTACAAGAC 1333
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1150 GTGAGAATGAACAATTTTTAGTTCTTTTAGTTATGTTTGTGTGAGAAATTGCTACAAGA- 1208
Query 1334 TGATGTATTCATCATGCAGTTGGATAATGTATTCATTATGCTTATTCGATAGTTTGTGTT 1393
| || || | ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1209 T--TG-AT-------G---TTGGATAATGTATTCATCATGCTTAATCGATAGTTTGTGTT 1255
Query 1394 CATCGAGCTATGTATAAATCATCTCTGCTCTTTTTAATACAACAAACTGTCTC 1446
| ||||||||||||||||||||||||||| |||||||| ||||||| |||||
Sbjct 1256 CCCCGAGCTATGTATAAATCATCTCTGCTCATTTTAATATAACAAACCGTCTC 1308
Score = 885 bits (479), Expect = 0.0
Identities = 534/561 (95%), Gaps = 1/561 (0%)
Strand=Plus/Plus
Query 31 agaa-aaattagagagagtagaagaagcagaagCAGTAATGGTACGAGCTTCATCGTCGA 89
|||| || |||||| ||||||||| || || | ||||||||||||||||||||||||||
Sbjct 25 AGAAGAATTTAGAGGGAGTAGAAGCAGAAGCATTAGTAATGGTACGAGCTTCATCGTCGA 84
Query 90 AGAAAGGAGGATCAAAAGGAGGAGACAAAGACGACGCAGAGTCAAAACAGAGGAAGAGAT 149
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 85 AGAAAGGTGGATCAAAAGGAGGAGATAAAGACGATGCAGAGTCAAAACAGAGGAAGAGAT 144
Query 150 TAAAAACCCTAGCTCTCGATAACCAATTGCTCTCTGATTCTCCGGCGAAATCTCATTCCT 209
| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 145 TGAAAACCCTAGCTCTCCATAACCAATTGCTCTCTGATTCTTCGGCGAAATCTCTTTCCT 204
Query 210 CTCTCAAACCTTCAAAGCAAGTTCTCAAACACCATGGCACCGACATCATCCGCAAATCTC 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 CTCTCAAACCTTCAAAGCAAGTTCTCAAACACCATGGCACCGACATCATCCGCAAATCTC 264
Query 270 AGCGCAAGAATCGCTTTCTCTTCTCCTTCCCTGGTCTTCTCGCTCCTATCTCCGCCGCTA 329
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 265 AGCGCAAGAATCGCTTTCTCTTCTCCTTCCCTGGTCTTCTCGCTCCTATCTCCGGCGCTA 324
Query 330 CCATCGGCGATCTCGATCGATTATCTACCAAAAACCCTGTCCTCTACCTTAATTTCCCAC 389
| |||||||||||||||||||| || || |||||||||||||||||||| |||||||| |
Sbjct 325 CTATCGGCGATCTCGATCGATTGTCCACTAAAAACCCTGTCCTCTACCTCAATTTCCCCC 384
Query 390 AGGGTCGTATGAAACTTTTTGGAACGATTTTGTATCCGAAGAACAGATACTTGACTCTTC 449
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 385 AGGGTCGTATGAAACTTTTTGGAACGATTTTGTATCCCAAGAACAGATACTTGACTCTTC 444
Query 450 AATTCTCTAGAGGAGGCAAAAATGTCTTATGTGATGATTATTTTGATAACATGATTGTGT 509
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 445 AATTCTCCAGAGGAGGCAAAAATGTCTTGTGTGATGACTATTTTGATAACATGATTGTGT 504
Query 510 TCTCTGAGTCATGGTGGATTGGGACAAAAGAGGAGAATCCAGAAGAAGCTCGTCTTGATT 569
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 505 TCTCTGAGTCATGGTGGATTGGGACAAAAGAGGAGAATCCTGAAGAAGCTCGTCTTGATT 564
Query 570 TCCCTAAAGAACTAGCTCAGG 590
|||||||||||||||||||||
Sbjct 565 TCCCTAAAGAACTAGCTCAGG 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5