BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G48400.1

Length=1542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473927 jgi|Araly1|473927|fgenesh2_kg.1__3881__AT1G47915.1         302    7e-81
  Ahg473928 jgi|Araly1|473928|fgenesh2_kg.1__3882__AT5G12450.1         244    1e-63


> Ahg473927 jgi|Araly1|473927|fgenesh2_kg.1__3881__AT1G47915.1
Length=192

 Score =  302 bits (163),  Expect = 7e-81
 Identities = 181/190 (95%), Gaps = 0/190 (0%)
 Strand=Plus/Plus

Query  10   ATGAGAACTTCTCCTAGAGATTCGATAAGCAATTTGCCAGATGAGATTCTTGGCAAAATC  69
            ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAGAAGTTCTGCTAGAGATTCGATAAGCAATTTGCCAGATGAGATTCTTGGCAAAATC  60

Query  70   TTGTCTTTGCTCCCGACAAAAGTGGCTGCTTCCACATCGGTTCTGTCCAAGAGGTGGAGG  129
            ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  61   TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCCACATCGATTCTGTCCAAGAGGTGGAGG  120

Query  130  AATCTGTTGGGTCTTGTAGACAACCTCTGCTTTGATGAGTCGATGGTTGTTTATCCCAAC  189
            |||||| ||||||||||||||||||| || |||||||||||||||||||| |||||||| 
Sbjct  121  AATCTGCTGGGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTGTATCCCAAT  180

Query  190  GAAGAAGAAG  199
            ||||||||||
Sbjct  181  GAAGAAGAAG  190


> Ahg473928 jgi|Araly1|473928|fgenesh2_kg.1__3882__AT5G12450.1
Length=195

 Score =  244 bits (132),  Expect = 1e-63
 Identities = 164/180 (91%), Gaps = 0/180 (0%)
 Strand=Plus/Plus

Query  1348  GTGCTACAGATTTCAGAGTATGGAGGTTATTTTCAAGAGCTGAAACAGATGAGACATTTC  1407
             |||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct  1     GTGCTAGAGATTTCAGAGTATGGAGGTTCTTTTCTAGAGCTGAAACAGATGAGACATTTC  60

Query  1408  TTGGGCAAGTTGGAATGTCTTGAAACCGTGAAAGTTGGTGTTCACGCAGAAAACAACAAC  1467
             ||||| |||||| ||||||||||||| ||||||||||||||| | || || ||| |||||
Sbjct  61    TTGGGGAAGTTGAAATGTCTTGAAACTGTGAAAGTTGGTGTTGATGCGGACAACGACAAC  120

Query  1468  AACAGTGAGTTCTTGCGAGCTAATGTGCTGACTCTTCCCAGAGTTTCAGCAAAGTGCAAC  1527
             |||||||||||||||||||||||| ||||| |||| |||||| ||||| |||||||||||
Sbjct  121   AACAGTGAGTTCTTGCGAGCTAATCTGCTGGCTCTCCCCAGACTTTCATCAAAGTGCAAC  180



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 57744811420


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5