BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G48405.1

Length=894
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg913869 jgi|Araly1|913869|Al_scaffold_0001_4123                    726    0.0  


> Ahg913869 jgi|Araly1|913869|Al_scaffold_0001_4123
Length=588

 Score =  726 bits (393),  Expect = 0.0
 Identities = 534/600 (89%), Gaps = 18/600 (3%)
 Strand=Plus/Plus

Query  301  ATGGAAGTCTCCACTTGTGATATGCAAAAGAACATTGAAGACTTAGTCTCGCAGCTCGTT  360
            |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||  | 
Sbjct  1    ATGGAAGTCTCCACTTGTGATAAGCACAAGAACATTGAAGAGTTAGTCTCGCAGCTAATG  60

Query  361  ACTGCAAACTTGGAGAAAGATACCGCGAAGCACATA-TTACAACGCAGAGAACAAACGTT  419
            |||||||||| ||||||||||||||| ||||||  | || |||||||||||||||| |||
Sbjct  61   ACTGCAAACTGGGAGAAAGATACCGCAAAGCAC-GAGTTGCAACGCAGAGAACAAAAGTT  119

Query  420  GCAAGAAGCTTGCAAGACAATTGGCTTGCTAAAGAAGCTTGTGATGTTGCTTGATATGGA  479
            ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct  120  GCAAGAAGCTTCCAAGACAATTGACTTGCTAAAGAAGCTTGTGATGTTACTTGACATGGA  179

Query  480  GAAGGAAGTAGCTGTAGAAGAAACCGCAAATCTCGGACACAAACTTACTTCCCTCTTGGA  539
            ||| ||||||||| |||| ||||| |||||||||||| ||||||| ||||| ||| |   
Sbjct  180  GAAAGAAGTAGCTCTAGAGGAAACAGCAAATCTCGGATACAAACTCACTTCTCTCCT---  236

Query  540  AGAGAACCGAGAGCTCGCCAGTGAAGCGCTGTTCATGAAAAACGAAGCAGTTAAGCTTGC  599
             | | |   ||||||||||| |||||||||||| |||||||| |||||||||| ||| ||
Sbjct  237  -G-G-A---AGAGCTCGCCACTGAAGCGCTGTTTATGAAAAAGGAAGCAGTTAGGCTAGC  290

Query  600  TAGGTGCGTTCTTAAGATGAGGGATGAACATTTTCACAAGATGTGTCATCTCCAGAACCA  659
            ||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  291  TAGATGCGTGCTTAAGATGAGGGATGAACATTTTCACAAGGTGTGTCATCTCCAGAACCA  350

Query  660  AATCTACGA-GCTGCAGTCATCGAGAGAGCCTGTCTACGAAAATGAATCCTCGCAGAGCT  718
            ||||||| | | ||||||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct  351  AATCTAC-ACGTTGCAGTCATCGAGAGAGTCTGTCTACGAAAATGTATCCTCGCCGAGCT  409

Query  719  GCTTTGGATTGgaaaatagtaagaaaaagagcaagaagagaaagatgagtgaaacaagaa  778
            ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct  410  GCTTTGGATTGGATAATAGTAAGAACAAGAGCAAGAAGAGAAAAATGAGTGAAACTAGAA  469

Query  779  gtgaa-actggagagaaaatgagaTCCAAGTGGTTCAAGAGACTCAATACCATCAATCCC  837
            ||||| | ||||||||||| ||||| ||||||| | ||||||||||||||||||||||||
Sbjct  470  GTGAACA-TGGAGAGAAAAAGAGATACAAGTGGCTAAAGAGACTCAATACCATCAATCCC  528

Query  838  TTTACCAAATGTAGCATTAC--GCC-ATTATCTTCTCCCCTCTATCATGCTGCACTCTAA  894
            ||| ||||||||||||||||  ||| ||  |||||||| ||| |||||||||||||||||
Sbjct  529  TTTCCCAAATGTAGCATTACCCGCCTATCGTCTTCTCCGCTCCATCATGCTGCACTCTAA  588



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33128814873


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5