BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48420.1
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336962 jgi|Araly1|336962|fgenesh1_pg.C_scaffold_1003527 1879 0.0
> Ahg336962 jgi|Araly1|336962|fgenesh1_pg.C_scaffold_1003527
Length=1209
Score = 1879 bits (1017), Expect = 0.0
Identities = 1136/1194 (95%), Gaps = 6/1194 (1%)
Strand=Plus/Plus
Query 17 TTGACACTCTCAAGAGTAAAG-CTCGAGCTTGCGAGAAGAAGCATGTCTGCAACATCCGT 75
||||||||||||||||| ||| || ||||||| ||||||||| |||||||||||||||||
Sbjct 19 TTGACACTCTCAAGAGT-AAGACTTGAGCTTGGGAGAAGAAGAATGTCTGCAACATCCGT 77
Query 76 ACCTTCAATGGCGGATTTTCTCACCAAAAAACCTTACTCTCCTCCTTCTTGGGCTTCTCA 135
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 78 ACCTTCAATGGCGGATTTTCTCACAAAAAAACCTTACACTCCTCCTTCTTGGGCTTCTCA 137
Query 136 TCTTCGTCCGCTTCCTTCTCACACTTTCTCCCTCGCTCACCTTCCTACTCCGATCCATCG 195
||||| |||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 138 TCTTCTTCCGATTCCTTCCCACACTTTCTCTCTCGCTCACCTTCCTACGCCGATCCATCG 197
Query 196 ATGGAATCTTCCTGGTCTTCCTAATGGCACAGAACTCTGGATCAAGCGAGATGATTTCAC 255
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 198 ATGGAATCTTCCTGGTCTTCCTAATGGCACTGAACTCTGGATCAAGCGAGATGATTTCAC 257
Query 256 CGGAATGGAATTGAGTGGAAACAAAGTACGAAAACTCGAATTCTTAATGGCGGAAGCTGT 315
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 258 CGGAATGGAATTGAGTGGAAACAAAGTCCGAAAACTCGAATTCTTAATGGCGGAAGCTGT 317
Query 316 TGATCAACACGCTGATACTGTAATCACTATCGGCGGTATTCAGAGCAATCATTGTCGTGC 375
||||||| |||| || || || ||||| ||||||||||||||||||||||||||||||||
Sbjct 318 TGATCAAAACGCCGACACCGTTATCACCATCGGCGGTATTCAGAGCAATCATTGTCGTGC 377
Query 376 TACAGCCACTGCATCTAACTATCTTAATCTCAATTCTCATCTTATTCTCCGTACTTCCAA 435
||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 378 TACAGCCACCGCATCAAACTATCTCAATCTCAATTCTCATCTTATTCTTCGTACTTCCAA 437
Query 436 GCTTCTTGCTGATGAAGATCCTGGATTGGTTGGGAATCTCCTTGTCGAGCGTCTCGTTGG 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 GCTTCTTGCTGATGAAGATCCTGGATTGGTTGGGAATCTCCTTGTCGAGCGTCTCGTTGG 497
Query 496 AGCTAATGTTCATCTAATCTCTAAAGAAGAGTATTCTTCCATTGGGAGTGAGGCTCTTAC 555
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 498 AGCTAATGTTCATCTCATCTCTAAGGAAGAGTATTCTTCCATTGGGAGTGAGGCTCTTAC 557
Query 556 TAATGCTCTGAAAGAGAAACTGGAAAAAGAA-GGAAAGAAACCCTATGTTATTCCAGTCG 614
||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||| ||||
Sbjct 558 TAATGCTCTGAAAGAGAAACTGGAAAAGGAAGGGAAA-AAACCGTATGTTATTCCGGTCG 616
Query 615 GTGGATCGAACTCTTTGGGAACTTGGGGTTATATAGAAGCAGCAAGGGAAATTGAGGAGC 674
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 617 GTGGATCAAACTCTTTGGGAACTTGGGGTTATATCGAAGCAGCAAGGGAAATTGAGGAGC 676
Query 675 AGCTGAATTA-TAGACCCGATGACCTGAAATTTGATGATATTGTGGTAGCATGTGGCAGT 733
||||||| | |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 677 AGCTGAA-AAGTAGACCTGATGGTCTGAAATTTGATGATATTGTGGTAGCATGTGGCAGT 735
Query 734 GGTGGTACAATTGCTGGTATTTCATTGGGGTCTTGGTTGGGAGCTCTAAAAGCCAAGGTT 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GGTGGTACAATTGCTGGTATTTCATTGGGGTCTTGGTTGGGAGCTCTAAAAGCCAAGGTT 795
Query 794 CATGCTTTCTCGGTTTGCGATGATCCTGATTACTTCTATGACTTTGTCCAAGGGCTTCTG 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 796 CATGCTTTCTCGGTTTGCGATGATCCTGATTACTTCTATGACTTTGTCCAAGGGCTTTTG 855
Query 854 GATGGACTTCACGCTGGTGTTAACTCTCGTGATATCGTCAACATCCACAATGCCAAAGGA 913
||||||||||| ||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 856 GATGGACTTCAAGCTGGTGTTAACTCTCGTGATATTGTTAGCATCCACAATGCCAAAGGA 915
Query 914 AAAGGATATGCCATGAACACGTCAGAGGAGCTTGAGTTTGTAAAGAAAGTAGCAAGTTCA 973
|| ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||
Sbjct 916 AATGGATATGCCATGAACACTTCAGAGGAGCTTAAGTTTGTAAAGGAAGTAGCAAGTTCA 975
Query 974 ACTGGTGTTATTCTTGATCCGGTTTACAGTGGGAAAGCTGCGTATGGTTTGATAAATGAG 1033
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 976 ACTGGTGTTATTCTTGATCCTGTTTACAGTGGGAAAGCTGTGTATGGTTTGATAAATGAG 1035
Query 1034 ATCACCAAAGATCCCAAATGTTGGGAGGGAAGGAAGATATTGTTCATACACACTGGTGGG 1093
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1036 ATCACCAAAGATCCCAAAAATTGGGAGGGAAGGAAGATATTGTTCATACACACCGGTGGG 1095
Query 1094 CTTCTTGGGTTGTATGATAAGGTTGATCAAATGGCATCTCTGATGGGTAATTGGTCCCGG 1153
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct 1096 CTTCTTGGGTTGTATGATAAGGTTGATCAAATGGCTTCTCTGATGGGTAGTTGGTGCCGG 1155
Query 1154 ATGGATGTTTCAGAATCCGTTCCAAGAAAAGATGGTGTTGGGAAAATGTTCTAG 1207
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1156 ATGGATGTTTCAGAATCCGTGCCAAGAAAAGATGGTGTTGGAAAAATGTTCTAG 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51542183784
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5