BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48440.1
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473983 jgi|Araly1|473983|fgenesh2_kg.1__3937__AT1G48440.1 913 0.0
> Ahg473983 jgi|Araly1|473983|fgenesh2_kg.1__3937__AT1G48440.1
Length=639
Score = 913 bits (494), Expect = 0.0
Identities = 579/618 (94%), Gaps = 13/618 (2%)
Strand=Plus/Plus
Query 8 GTTCGTCTATTATTATTCTTCGTCTACTTCACACGGAA-T--agagatagagagagagag 64
||||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||
Sbjct 2 GTTCGTCTATTATTATTCTTCGTCTACTTCACACGAAATTCAAGAGAGAGAGAGAGAGAG 61
Query 65 agaTCCAGAAAAAGACGAACAACAATGGCGTTGCAATGGCTGATTCT-ATCGTATGTGGT 123
|||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 62 AGATCCAGAAGAAGACGAACAACAATGGCGTTGCAATGGCTGATTCTGA-CGTATGTGGT 120
Query 124 GGCCGTCGAAGTAGTAATCACCCTCGTGTTGACTCTCCCTTACCCTATGCTTCTTAAGAA 183
||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 121 GGCCGCCGAAGTAGTAATCACCCTCGTGTTGACTCTTCCTTACCCTATGCTGCTTAAGAA 180
Query 184 ACGTGTAGTTCAGCTTGTCTCATTGATTCTCCAACCTGCTGCTTCCATCGTCGCCTTCGC 243
|||||| || || |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 181 ACGTGTCGTACAACTTGTCTCGTTGATTCTCCAACCTGCTGCTTCCATCGTCGCTTTCGC 240
Query 244 CGGATTTCAGCTCCTCGATATTTACTGGAAGGCTGAGCATAGACTATCTTGTTCATCTGA 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 CGGATTTCAGCTCCTCGATATTTACTGGAAAGCTGAGCATAGACTATCTTGTTCATCTGA 300
Query 304 GGTTTGCACTGCTACAGAACGTGATCGCTACGAGAAATCTATCTACAAGGCTCAGAGGAA 363
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTATGCACTGCTACAGAACGTGATCGCTACGAGAAATCTATCTACAAGGCTCAGAGGAA 360
Query 364 CGTGGTTCTATGCGCTGCAGGAATTCTACTCTACTGGTGCATCTACCGCATCTGCAAATA 423
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 361 TGTGGTTCTGTGCGCTGCAGGAATTCTTCTCTACTGGTGCATCTACCGCATCTGTAAGTA 420
Query 424 CAACAAAGACCTGGAGCGCTTGGAGGCAACGGAGAAGAGATTCAAGGAAGAGTAATAA-T 482
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 421 CAACAAGGACCTGGAGCGCTTGGAGGCAACGGAGAAGAGATACAAGGAAGAGTAATAAAT 480
Query 483 CTTCACGAGTATAGGGAGTTGGTTCCTCAAAACCATTAT-ATA-A-GTAAAGCttttttt 539
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 481 -TTCACGAGTATAGGGAGTTGGTTCCTCAAAACCATTATTATATAAGTAAAGCTTTTTTT 539
Query 540 tATTGCATTTTTACGTTC-TAATATTATTGGACCTGAATGAAACTAAGAGTATCGTGAAC 598
|||||||||||||| ||| || ||||| || ||||||| ||||||| |||||||||||||
Sbjct 540 TATTGCATTTTTACATTCATA-TATTACTGAACCTGAACGAAACTATGAGTATCGTGAAC 598
Query 599 AGCCTTTGCACACTATAT 616
| |||| |||||||||||
Sbjct 599 ACCCTT-GCACACTATAT 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25161125220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5