BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48450.1
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473985 jgi|Araly1|473985|fgenesh2_kg.1__3939__AT1G48450.1 2119 0.0
Ahg904747 jgi|Araly1|904747|Al_scaffold_0003_1875 640 0.0
> Ahg473985 jgi|Araly1|473985|fgenesh2_kg.1__3939__AT1G48450.1
Length=1475
Score = 2119 bits (1147), Expect = 0.0
Identities = 1373/1480 (93%), Gaps = 24/1480 (2%)
Strand=Plus/Plus
Query 36 CTAGGTTTCTTCTTCATTTCTCC-TT-TCTCTGGCCAAAGTTCCGACTTTTTGCTTCTCC 93
||||| ||||||||| ||||||| || ||||||||||||||| ||| ||||||||||||
Sbjct 1 CTAGGATTCTTCTTCCTTTCTCCTTTCTCTCTGGCCAAAGTTGCGA-TTTTTGCTTCTCT 59
Query 94 CAGAGGCTAATCATGGACGCTGTGGCGGCGAATTTGTTTCAATC-TCCTTCCTTACTGCG 152
| |||||||||||||||||| |||||| |||||||| ||||||| || | |||||| ||
Sbjct 60 CGGAGGCTAATCATGGACGCCGTGGCGACGAATTTGGTTCAATCTTCAGT-CTTACTACG 118
Query 153 TCAAACTTCCGAAAGGTTGATA-TTTTCGACGCCCAACTGTCCTGGCTTCATGCGAATT- 210
|||| |||||||||||| |||| |||| |||||||||||||||||||||||||| |||
Sbjct 119 TCAATCTTCCGAAAGGTCGATACTTTT-AACGCCCAACTGTCCTGGCTTCATGCG-ATTC 176
Query 211 AGCTCCGGACCTCAATTTCGTCTC--AG-A------CAAAACTCTTCTCTTAAATTCTCG 261
|| |||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 177 GGCACCGGACCTCAATTTCGTCTCAAAGTACGTCTTCAAAACTCTTCTCTTAAATTCTCG 236
Query 262 AGACCATTTCAAAGCGGAACAACTTGTGTTAAATCTCGGAGAAGCTTTGTGGTTAAAGCT 321
|||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 237 AGACCATTGCAAAGTGGAACAACTTGTGCTAAATCTCGGAGAAGCTTTGTGGTTAAAGCT 296
Query 322 TCAGCTTCTGGTGATGCTTCAACAGAATCAATCGCGCCGCTTCAGTTGAAGTCTCCTG-T 380
||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||| |
Sbjct 297 TCAGCTTCTGGTGATGCGTCAACTGATTCAATCGCGCCACTTCAGTTGAAGTCTCCTGTT 356
Query 381 GGGACAGTTTCTGTCACAGATATTAGTGAGCCATCCTCATCTTGTTCCAGCAGCTGTTGA 440
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GGG-CAGTTTCTGTCACAGATATTAGTGAGCCATCCTCATCTTGTTCCAGCAGCTGTTGA 415
Query 441 ACAGCAGCTTGAACAGCTCCAAATTGATCGAGACGCTGAAGAACAGAGTAAAGATGCATC 500
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 416 ACAGCAGCTTGAACAGCTCCAAATCGATCGAGACGCTGAAGAACAGAGCAAAGATGCATC 475
Query 501 CTCTGTCCTTGGAACAGACATTGTTCTCTACAGGAGAATTGCTGAAGTTAAGGAGAAAGA 560
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CTCTGTCCCTGGAACAGACATTGTTCTCTACAGGAGAATTGCTGAAGTTAAGGAGAAAGA 535
Query 561 GAGAAGAAGGGCCTTGGAAGAGATTTTGTATGCGTTAGTGGTTCAGAAGTTCATGGATGC 620
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 536 GAGAAGAAGGGCTTTGGAAGAGATTTTATATGCGTTAGTGGTTCAGAAGTTCATGGACGC 595
Query 621 TAATGTTACACTTGTACCATCCATAACCTCTTCATCTGCGGATCCATCTGGTCGAGTTGA 680
||||||| |||||||||||||||||| ||| || | ||| ||||||||||||||||||||
Sbjct 596 TAATGTTTCACTTGTACCATCCATAAGCTCATCGTTTGCAGATCCATCTGGTCGAGTTGA 655
Query 681 TACTTGGCCAACTCTAGATGGGGAACTTGAGAGACTTCACTCGCCTGAAGTTTATGAGAT 740
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 656 TACTTGGCCGACTCTAGATGGGGAACTTGAGAGACTTCACTCGCCTGAGGTTTATGAGAT 715
Query 741 GATTCAGAATCATCTTTCCATCATTCTTAAAAACCGCACTGATGATCTGACAGCAGTTGC 800
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 716 GATTCAGAATCATCTTTCCATCATTCTTAAGAACCGCACTGATGATCTGACAGCAGTTGC 775
Query 801 GCAGATAAGCAAACTTGGAGTTGGACAGGTATATGCTGCTTCGGTGATGTATGGGTATTT 860
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 776 GCAGATAAGCAAACTTGGAGTTGGACAGGTATATGCTGCTTCCGTGATGTATGGGTATTT 835
Query 861 CCTGAAGAGGATCGATCAAAGGTTTCAGCTTGAGAAGACGATGAGGATTCTCCCAGGTGG 920
||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 836 CCTGAAGCGGATTGATCAAAGGTTTCAGCTCGAGAAGACGATGAGGATTCTCCCAGGTGG 895
Query 921 GTCAGATGAAGGTGAGACTAGCATTGAGCAAGCAGGCCGAGATGTAGAGAGAAACTTCTA 980
|||| ||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||
Sbjct 896 GTCATATGAAGGTGAGACTAGCATTGAGCAAGCAAGCCGAGAAATAGAGAGAAGCTTCTA 955
Query 981 TGAAGAAGCAGAAGAGACTTATCAGGCTGTTTCCTCAAACCAAGACGTTGGTTCGTTTGT 1040
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 956 TGAAGAAGCGGAAGAGACTTATCAGGCTGTTTCCTCAAACCAAGAGGTTGGTTCGTTTGT 1015
Query 1041 AGGAGGGATCAATGCCAGTGGCGGTTTTAGCAGTGATATGAAGCAATCCCGGTTAAAGAC 1100
||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1016 GGGAGGAATCAATGCGAGTGGTGGTTTTAGTAGTGATATGAAGCAATCCCGGTTAAAGAC 1075
Query 1101 ATACGTTATGTCCTTTGATGGAGAAACCCTTCAAAGGTACGCTACAATAAGATCTAGAGA 1160
|||||||||||||||||| || || || || || || ||||||||||||||||| |||||
Sbjct 1076 ATACGTTATGTCCTTTGACGGGGAGACACTACAGAGATACGCTACAATAAGATCAAGAGA 1135
Query 1161 ATCGGTTGGGATAATTGAGAAGCATACAGAAGCATTGTTTGGGAGGCCAGAGATTGTGAT 1220
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1136 AGCGGTTGGGATAATTGAGAAGCATACAGAGGCATTGTTTGGGAGGCCAGAGATTGTGAT 1195
Query 1221 AACGCCACAAGGCACTATTGATTCCTCGAAGGACGAGCATATCAAGATCAGCTTCAAGGG 1280
||| ||||||||||| ||||| || |||||||| |||||||| |||||||||||||||||
Sbjct 1196 AACACCACAAGGCACAATTGACTCTTCGAAGGATGAGCATATAAAGATCAGCTTCAAGGG 1255
Query 1281 ATTGAAGAGGCTTGTGTTGGAGGCTGTGACGTTTGGTTCTTTCCTCTGGGACGTGGAGAG 1340
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1256 ATTGAAGAGGCTTGTGTTGGAGGCTGTGACGTTTGGGTCTTTCCTTTGGGACGTGGAGAG 1315
Query 1341 CCATGTAGACTCAAGGTATCACTTCGTACTGAACTGAAATGGCCTCTGTGGTTTA-TGAG 1399
|||||||| |||||||||||||||||||||| ||||||||| || |||| ||| ||||
Sbjct 1316 TCATGTAGATTCAAGGTATCACTTCGTACTGAGCTGAAATGGTCTATGTG-TTTGGTGAG 1374
Query 1400 GATGTGCCACATTCTTTGAGAGGGTTTGGGGATTTGTTGTTTGTAATATAT--GCGACTG 1457
||||||||| |||||||||||||||||||||||||||| |||||||||||| || ||||
Sbjct 1375 GATGTGCCAGATTCTTTGAGAGGGTTTGGGGATTTGTTCTTTGTAATATATATGCAACTG 1434
Query 1458 TGAACTGACCAACTAATATCAATACCCATTTTATGGTAAT 1497
|||| |||||||||||||||||||||||||||| ||||||
Sbjct 1435 TGAATTGACCAACTAATATCAATACCCATTTTAAGGTAAT 1474
> Ahg904747 jgi|Araly1|904747|Al_scaffold_0003_1875
Length=1281
Score = 640 bits (346), Expect = 0.0
Identities = 823/1043 (79%), Gaps = 74/1043 (7%)
Strand=Plus/Plus
Query 352 ATCGCGCCGCTTCAG-TTGAAGTCTCCTG-TGGGACAGTTTCTGTCACAGATATTAGTGA 409
||||| ||||||||| || || || |||| | || ||||||||||| ||||| || ||||
Sbjct 292 ATCGCTCCGCTTCAGCTTCAA-TCGCCTGCT-GGTCAGTTTCTGTCTCAGATTTTGGTGA 349
Query 410 GCCATCCTCATCTTGTTCCAGCAGCTGTTGAACAGCAGCTTGAACAGCTCCAAATTGATC 469
|||||||||||||||| || ||||||||||||||||||||||| ||||| |||| |||||
Sbjct 350 GCCATCCTCATCTTGTGCCTGCAGCTGTTGAACAGCAGCTTGACCAGCTTCAAACTGATC 409
Query 470 GAGACGCTGAAGAACAGAGTAAAGATGCATCCTCTGT-CCTTGGAACAGACATTGTTCTC 528
| ||| |||| | ||||| || |||||||| ||||| || |||||| ||||| ||||||
Sbjct 410 GGGACTCTGATGGACAGAACAAGGATGCATCGTCTGTACC-TGGAACCGACATCGTTCTC 468
Query 529 TACAGGAGAATTGCTGAAGTTAAGGAGAAA-GAGAGAAGAAGGGCCTTGGAAGAGATTTT 587
|||| ||||||||| || |||||||| ||| |||||||||||| | ||||| ||||||||
Sbjct 469 TACAAGAGAATTGCGGAGGTTAAGGA-AAACGAGAGAAGAAGGACATTGGAGGAGATTTT 527
Query 588 GTATGCGTTAGTGGTTCAGAAGTTCATGG-ATGCTAATGTTA-CACTTGTACCATCCA-T 644
|||||| || |||||||| |||||||||| || |||||| || |||||||||||| || |
Sbjct 528 GTATGCATTGGTGGTTCAAAAGTTCATGGAAT-CTAATG-TATCACTTGTACCAT-CAGT 584
Query 645 AACCTCTTCATCTGCGGATCCATCTGGTCGAGTTGATACTTGGCCAACTCTAGA-TGG-G 702
|| | | ||||| | ||||| |||||||| |||||||||||||| || | | | ||| |
Sbjct 585 AAGC-C--CATCTTCAGATCCGTCTGGTCGGGTTGATACTTGGCCGAC-C-AAAGTGGAG 639
Query 703 GAACTTGAGAGACTTCACTCGCCTGAAG-TTTATGAGATGATTCAGAATCATCTTTCCAT 761
|||||||| | ||||||||||| | || | || ||||||||||| || ||||| || |
Sbjct 640 AAACTTGAGCGGCTTCACTCGCCCG-AGATGTACGAGATGATTCACAACCATCTAGCCCT 698
Query 762 CATTCTTAAAAACCGCACT-GATGATCTG-ACAGCAGTTGCGCAGATAAGCAAACTTGGA 819
||||||| || | | | | | ||||||| || | ||||| ||||||||||| || ||
Sbjct 699 CATTCTTGGAAGCAG-AATGGGTGATCTGAAC-TCTGTTGCTCAGATAAGCAAGCTCAGA 756
Query 820 GTTGGACAGGTATATGCTGCTTCGGTGATGTATGGGTATTTCCTGAAGAGGATCGATCAA 879
||||| || || || |||||||| || |||||||| |||||| |||||||| | || |||
Sbjct 757 GTTGGGCAAGTTTACGCTGCTTCTGTTATGTATGGATATTTCTTGAAGAGGGTGGACCAA 816
Query 880 AGGTTTCAGCTTGAGAAGACGATGAGGATTCTCCCAGGTGGGTCAGATGAAGGTGAGACT 939
||||||||||||||||||||||||| |||||| || ||||||| |||||| || | ||
Sbjct 817 AGGTTTCAGCTTGAGAAGACGATGAAGATTCTTCCTGGTGGGTTGGATGAAAGTAAAACA 876
Query 940 AGCATTGAGCAAGCAGGCCGAGATGTAGAGAGAAACTTC-TATGAAGAAGCAGAAGAGAC 998
||| |||| ||| | | ||| | |||| |||| | ||| | | || | |
Sbjct 877 AGCGTTGAACAA-C---C--AGA-G--GAGA-AAACGACATATCA-G--GC-G--G---- 916
Query 999 TTATCAGGCTGTTTCCTCAAACCAAGACGTTGGTTCGTTTGTAGGAGG-GATCAATGCCA 1057
| ||| || | ||| ||| || |||||||| |||| ||| || | | | ||| |
Sbjct 917 T-ATC---CT----C-TCAC-CCA-GAGGTTGGTTCATTTGCAGGCGGAGTT-AGTGCTA 964
Query 1058 -GTGGCGGTTTTAGCAGTGATATGAAGCAATCCCGGTTAAAGACATACGTTATGTCCTTT 1116
| ||| ||| ||||||| || || | |||||||||| | ||||||| ||||| ||
Sbjct 965 AG-GGC--TTTG-GCAGTGAGATTAAACCGTCCCGGTTAAGGTCATACGTGATGTCATTC 1020
Query 1117 GATG-GAGAAACCCTTCAAAGGTACGCTACAATAAGATCTAGAGAATCGGTTGGGATAAT 1175
|||| | || || ||||| || ||||| || |||||||| |||||| | ||||| || ||
Sbjct 1021 GATGCG-GAGACGCTTCAGAGATACGCCACTATAAGATCAAGAGAAGCTGTTGGAATCAT 1079
Query 1176 TGAGAAGCATACAGAAGCATTGTTTGGGAGGCCAGAGATTGTGATAACGCCACAAGGCAC 1235
|||||||| ||||| ||||||||||| | ||| |||||||| ||||| ||| |||| ||
Sbjct 1080 CGAGAAGCACACAGAGGCATTGTTTGGTAAGCCCGAGATTGTAATAACACCAGAAGGAAC 1139
Query 1236 TATTGATTCCTCGAAGGACGAGCATATCAAGATCAGCTTCAAG-GGATTGAAGAGGCTTG 1294
||||||| ||||||||||| || || |||||||||||| | ||| |||||||||| |
Sbjct 1140 GGTTGATTCATCGAAGGACGAACAGATAAAGATCAGCTTCG-GTGGAATGAAGAGGCTCG 1198
Query 1295 TGTTGGAGGCTGTGACGTTT-GGTTCTTTCCTCTGGGACGTGGAGAGCCATGTAGACT-C 1352
| ||||||||||| || ||| || || ||||| ||||| || |||||||||||||| | |
Sbjct 1199 TCTTGGAGGCTGTAAC-TTTCGGGTCGTTCCTTTGGGATGTTGAGAGCCATGTAGA-TGC 1256
Query 1353 AAGGTATCACTTCGTACTGAACT 1375
||||| ||||| ||| ||||||
Sbjct 1257 TAGGTACCACTTTGTATTGAACT 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60715850530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5