BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48460.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473986 jgi|Araly1|473986|fgenesh2_kg.1__3940__AT1G48460.1 1548 0.0
> Ahg473986 jgi|Araly1|473986|fgenesh2_kg.1__3940__AT1G48460.1
Length=1145
Score = 1548 bits (838), Expect = 0.0
Identities = 1039/1131 (92%), Gaps = 34/1131 (3%)
Strand=Plus/Plus
Query 108 AAAAACCCT-AACAAAAATGGAATCGAAAGCAATTTGCTTAGGGTTTCTTCCTCCAAGAC 166
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 AAAAACCCTAAACGAAAATGGAATCGAAAGCAATTTGCTTAGGGTTTCTTCCTCCAAGAC 79
Query 167 TTCGATTTTCATCTCCACGTTTACTCTCTC-TTCCTCCTTCTCCTCCTGC-TTCTTCCAC 224
|| ||||||||||||||| ||||||||| | ||| ||||| || ||| | |||||| ||
Sbjct 80 TTGGATTTTCATCTCCACATTTACTCTCCCGTTC-TCCTTTTC-TCCAGGGTTCTTCGAC 137
Query 225 ATTTGCGACGCGTCACAAACTTGATTCCAGACAAACCCTCCTTTGGAACAAACCGCAATT 284
||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 138 TTTTGCAACGCGTCAGAAACTTGATTCCAGACAAACCCTCCGTTGGAACAAACCGCAATT 197
Query 285 GAGCCGAGTTCGTGTAGCGTGTTCTTCTTCTCAATCTGACTCAAGACCTGAGAAGAAGCA 344
|||||||| || |||||||||||||||| ||||| | | |||| | | | |
Sbjct 198 GAGCCGAGGTCATGTAGCGTGTTCTTCTAAGCAATCGGG-T-AAGAG-T-A-A-----C- 246
Query 345 ATCGGATAAGAGTAACTATGCTCGAGCTGAGCTGTTCCGTGGGAAATCAGGTTCTGTTTC 404
| || | | | | ||| |||||| | | ||||||||||||||||||||||||
Sbjct 247 -T---AT--GC-T--CGA-GCT-GAGCTG---T-T-CCGTGGGAAATCAGGTTCTGTTTC 290
Query 405 TTTCAATGGTCTGACTCATCAGCTGGTTGAAGAAAGTAAACTGGTTTCAGCTCCGTTTCA 464
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 291 TTTCAATGGTCTGACTCATCAGCTGGTTGAAGAAAGTAGACTGGTTTCAGCTCCATTTCA 350
Query 465 AGAAGAGAAAGGTTCTTTCTTGTGGGTTTTGGCTCCTGTTGTTTTGATTTCTTCGTTGAT 524
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 351 AGAAGAGAAGGGTTCTTTCTTGTGGGTTTTGGCTCCTGTTGTCTTGATTTCTTCATTGAT 410
Query 525 TCTTCCTCAGTTCTTTCTAAGTGGTATCATTGAAGCTACCTTCAAAAACGACACTGTTGC 584
|||||||||||||||||| |||||| |||||||||| | ||||||||||||||||||||
Sbjct 411 TCTTCCTCAGTTCTTTCTTAGTGGTGCCATTGAAGCTTCTTTCAAAAACGACACTGTTGC 470
Query 585 TGAAATTGTTACTTCTTTTTGCTTTGAGACGGTGTTTTATGCTGGTCTTGCGATATTCCT 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGAAATTGTTACTTCTTTTTGCTTTGAGACGGTGTTTTATGCTGGTCTTGCGATATTCCT 530
Query 645 GTCTGTGACTGACCGAGTGCAGAGGCCGTACTTAGACTTCAGCTCCAAGAGATGGGGTCT 704
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GTCTGTGACCGACCGAGTGCAGAGGCCGTACTTAGACTTCAGCTCCAAGAGATGGGGTCT 590
Query 705 GATCACTGGACTGAGGGGATACCTTACGTCTGCATTCCTCACGATGGGTTTAAAAGTTGT 764
||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 591 GATCACTGGCCTGAGGGGATATCTTACGTCTGCATTTCTCACGATGGGTTTGAAAGTTGT 650
Query 765 AGTTCCCGTATTTGCTGTTTACATGACTTGGCCAGCTCTTGGAATAGATGCTTTGATTGC 824
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 651 AGTTCCCGTATTTGCTGTATACATGACTTGGCCAGCTCTCGGAATAGATGCGTTGATTGC 710
Query 825 AGTGCTTCCTTTCTTGGTTGGCTGTGCAGTTCAAAGAGTTTTCGAGGCTCGGCTTGAAAG 884
||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||||
Sbjct 711 AGTGCTTCCTTTCTTAGTTGGATGTGCAGTTCAACGAGTTTTTGAGGCTCGGCTTGAAAG 770
Query 885 ACGTGGCTCATCCTGTTGGCCCATTGTTCCAATAGTCTTTGAGGTGTATAGGCTGTATCA 944
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 771 ACGCGGCTCATCCTGTTGGCCCATTGTTCCAATAGTCTTTGAGGTGTATAGGTTGTATCA 830
Query 945 GGTGACAAGAGCAGCGACTTTTGTTCAGAGGCTGATGTTTATGATGAAAGATGCGGCAAC 1004
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AGTGACAAGAGCAGCGACATTTGTTCAGAGGCTGATGTTTATGATGAAAGATGCGGCAAC 890
Query 1005 GACTGCTGAAATAACAGAGCGAGGAGTTGCACTAGTTGGTTTGGTTGTGACTTTGCAGTT 1064
||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 891 AACTGCAGAAATTACAGAGCGAGGAGTTGCATTAGTTGGTTTGGTTGTGACTTTGCAGTT 950
Query 1065 TCTAGCTGTTATGTGTCTCTGGTCGTTTATCACTTTTCTTATGCGCCTCTTTCCTTCTAG 1124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TTTAGCTGTTATGTGTCTCTGGTCGTTTATCACTTTTCTTATGCGCCTCTTTCCTTCTAG 1010
Query 1125 ACCTGTAGGTGAAAACTACTAGA-TCTCAGTGTTTAGTGATTGTTAGATGTAGCCAAATC 1183
||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||
Sbjct 1011 ACCTGTAGGTGAAAACTACTAAAATCTCAGTGTTTAGTGACTGTTAGATGTAGCCAAATC 1070
Query 1184 CCATCGG-TTTTGTTTTGTTTCTGTGTTCATTTCAGTAGTAATGAATTGTA 1233
||||||| ||||||||||| |||||||||||||||| |||||||| |||||
Sbjct 1071 CCATCGGGTTTTGTTTTGTGTCTGTGTTCATTTCAGGAGTAATGAGTTGTA 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5