BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48470.1
Length=1307
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923181 jgi|Araly1|923181|scaffold_104462.1 1788 0.0
Ahg479266 jgi|Araly1|479266|fgenesh2_kg.3__1967__AT3G17820.1 907 0.0
Ahg488515 jgi|Araly1|488515|fgenesh2_kg.6__1649__AT5G16570.1 553 1e-156
> Ahg923181 jgi|Araly1|923181|scaffold_104462.1
Length=1109
Score = 1788 bits (968), Expect = 0.0
Identities = 1050/1091 (96%), Gaps = 0/1091 (0%)
Strand=Plus/Plus
Query 50 TCTTCTTTCTCTTTCGGAACAAAAATGACGTCTCCTCTCTCAGATCTCCTAAACCTTGAT 109
|||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||
Sbjct 2 TCTTCTTTCTCTTTTGGAACAGAAATGACGTCTCCACTCTCAGATCTCCTAAACCTCGAT 61
Query 110 CTATCAGACACCAAGAAAATCATCGCTGAATACATATGGATCGGTGGCTCTGGAATGGAT 169
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 62 CTCTCAGATACCAAGAAAATCATCGCTGAATACATATGGATTGGTGGCTCTGGAATGGAT 121
Query 170 ATTAGAAGCAAAGCCAGGACATTACCAGGACCAGTAAGTAATCCAACAAAGCTTCCAAAA 229
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 122 ATTAGAAGCAAAGCCAGGACATTACCAGGACCAGTAAGTGATCCAACAAAGCTTCCAAAA 181
Query 230 TGGAACTACGATGGATCTAGCACCGATCAAGCTGCCGGAGATGATAGTGAAGTCATTCTT 289
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 182 TGGAACTACGATGGATCTAGCACCGATCAAGCCGCTGGAGATGACAGTGAAGTCATTCTT 241
Query 290 TATCCTCAGGCAATATTTAAGGACCCATTCAGGAAGGGGAACAACATTCTGGTGATGTGT 349
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TATCCTCAGGCAATATTCAAGGACCCATTCAGGAAGGGGAACAACATTCTGGTGATGTGT 301
Query 350 GATGCTTACAGACCGGCCGGAGATCCAATTCCGACCAACAATAGGCACAAGGCCGTAAAA 409
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 302 GATGCTTACACACCGGCCGGAGATCCAATTCCGACCAACAATAGGAACAAGGCCGTCAAA 361
Query 410 ATCTTCGATCATCCCAATGTGAAGGCTGAAGAGCCTTGGTTTGGGATAGAGCAAGAATAC 469
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 362 ATCTTCGATCATCCCAATGTGAAAGCTGAAGAGCCTTGGTTTGGGATAGAGCAAGAATAC 421
Query 470 ACATTACTTAAAAAAGATGTGAAGTGGCCACTAGGTTGGCCTCTTGGTGGCTTTCCTGGT 529
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 422 ACATTACTTAAAAAAGACGTGAAGTGGCCATTAGGTTGGCCTCTTGGTGGCTTTCCTGGT 481
Query 530 CCTCAGGGACCGTACTATTGTGCAGTAGGTGCAGACAAAGCTTTTGGTCGTGACATTGTC 589
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 482 CCTCAGGGTCCGTACTATTGTGCAGTTGGTGCAGACAAAGCCTTTGGTCGTGACATTGTC 541
Query 590 GATGCTCACTATAAAGCTTGTCTATACTCCGGTTTGAGTATTGGTGGTGCCAATGGTGAA 649
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 542 GATGCTCACTATAAAGCTTGTCTTTACTCCGGTTTGAGTATTGGTGGTGCCAATGGTGAA 601
Query 650 GTCATGCCTGGACAATGGGAGTTTCAAATCAGTCCTACTGTTGGTATTGGTGCAGGTGAT 709
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 602 GTCATGCCTGGACAATGGGAGTTTCAAATCAGTCCTACTGTTGGTATTGGTGCCGGTGAT 661
Query 710 CAATTATGGGTTGCTCGTTACATTCTTGAGAGGATTACTGAGATATGCGGTGTGATTGTC 769
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 662 CAATTATGGGTTGCTCGTTACATTCTTGAGAGGATCACTGAGATATGCGGTGTGATTGTC 721
Query 770 TCATTCGATCCAAAACCAATCCAGGGTGATTGGAATGGAGCAGCCGCTCATACGAACTTC 829
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 722 TCATTCGACCCAAAACCAATCCAGGGTGATTGGAATGGAGCAGCAGCTCATACGAACTTC 781
Query 830 AGTACAAAATCGATGAGGAAAGATGGAGGACTGGATTTGATTAAGGAAGCAATAAAGAAG 889
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 782 AGTACAAAATCGATGAGGAAAGATGGAGGATTGGATTTGATTAAAGAAGCAATAAAGAAG 841
Query 890 CTTGAAGTGAAACACAAACAACACATTGCTGCTTATGGTGAAGGCAACGAGAGGCGTCTC 949
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 842 CTTGAAGTGAAACACAAACAACACATTGCGGCTTATGGTGAAGGCAACGAGAGGCGTCTC 901
Query 950 ACTGGGAAGCATGAAACTGCAGACATCAACACTTTCTCTTGGGGAGTGGCGGATCGTGGA 1009
||||||||||| ||||| ||||||||||||||||||||||||||||| || | ||||||
Sbjct 902 ACTGGGAAGCACGAAACCGCAGACATCAACACTTTCTCTTGGGGAGTCGCAAACCGTGGA 961
Query 1010 GCATCGGTGAGAGTAGGAAGAGATACGGAGAAAGAAGGTAAAGGGTATTTTGAAGATCGA 1069
||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 962 GCATCCGTGAGGGTAGGAAGAGATACGGAGAAAGAAGGGAAAGGGTATTTTGAAGATCGA 1021
Query 1070 AGGCCTTCGTCTAATATGGATCCTTACCTAGTTACCTCCATGATTGCTGAAACCACCATC 1129
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1022 AGGCCTTCGTCTAATATGGACCCTTACTTAGTTACCTCCATGATTGCTGAAACCACCATC 1081
Query 1130 CTCTAAGCTTT 1140
||||||| |||
Sbjct 1082 CTCTAAGGTTT 1092
> Ahg479266 jgi|Araly1|479266|fgenesh2_kg.3__1967__AT3G17820.1
Length=1270
Score = 907 bits (491), Expect = 0.0
Identities = 882/1070 (82%), Gaps = 29/1070 (3%)
Strand=Plus/Plus
Query 79 GTCTCCT-CTCTCAGATCTCCTAAACCTTGATCTAT-C-A-GACACC-AAGAAAATCATC 133
|||| || || ||||||||| | ||||| | || | | | | |||| || |||||||||
Sbjct 84 GTCT-CTGCTATCAGATCTCGTTAACCTCAACCTCTCCGACGCCACCGAA-AAAATCATC 141
Query 134 GCTGAATACATATGGATCGGTGGCTCTGGAATGGATATTAGAAGCAAAGCCAGGACATTA 193
|| |||||||||||||||||||| ||||||||||| || |||||||||||||||||| ||
Sbjct 142 GCCGAATACATATGGATCGGTGGATCTGGAATGGACATCAGAAGCAAAGCCAGGACACTA 201
Query 194 CCAGGACCAGTAAGTAATCCAACAAAGCTTCCAAAATGGAACTACGATGGATCTAGCACC 253
||||||||||| | | ||||| |||||||||| |||||||||||||| ||||| ||||||
Sbjct 202 CCAGGACCAGTCACTGATCCATCAAAGCTTCCCAAATGGAACTACGACGGATCCAGCACC 261
Query 254 GATCAAGCTGCCGGAGATGATAGTGAAGTCATTCTTTATCCTCAGGCAATATTTAAGGAC 313
| ||| ||||||||||| || |||||||||||||| || |||||||| ||||| |||||
Sbjct 262 GGTCAGGCTGCCGGAGAAGACAGTGAAGTCATTCTATACCCTCAGGCGATATTCAAGGAT 321
Query 314 CCATTCAGGAAGGGGAACAACATTCTGGTGATGTGTGATGCTTACAGACCGGCCGGAGAT 373
||||||||||| || |||||||| |||||||||||||||||||||| ||| || || |||
Sbjct 322 CCATTCAGGAAAGGCAACAACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGAT 381
Query 374 CCAATTCCGACCAACAATAGGCACAAGGCCG-TAAAAATCTTCGA-TCATCCCAATG-TG 430
|||||||| |||||||| |||||||| || | | || |||||| | || ||||| | ||
Sbjct 382 CCAATTCCAACCAACAAGAGGCACAACGCTGCT-AAGATCTTC-AGCCACCCCAACGTTG 439
Query 431 AAGGCTGAAGAGCCTTGGTTTGGGATAGAGCAAGAATACACATT-ACTTAAAAAAGATGT 489
|||| |||||||||| ||| || |||||||||||||| || | | |||| || ||
Sbjct 440 -CCTCTGAGGAGCCTTGGTATGGAATTGAGCAAGAATACACTTTGA-TGCAAAAGGACGT 497
Query 490 GAAGTGGCCACTAGGTTGGCCTCTTGGTGGCTTT-CCTGGTCCTCAGGGACCGTACTATT 548
||| |||||| | ||||||||| ||||||| ||| ||||| ||||||||||| ||||| |
Sbjct 498 GAACTGGCCAATTGGTTGGCCTGTTGGTGG-TTTCCCTGGCCCTCAGGGACCTTACTACT 556
Query 549 GTGCAGTAGGTGCAGACAAAGCTTTTGGTCGTGACATTGTCGATGCTCACTATAAAGCTT 608
||| || || || |||||||| |||||||||||||||| ||||| ||||| ||||| |
Sbjct 557 GTGGTGTGGGAGCTGACAAAGCCATTGGTCGTGACATTGTGGATGCACACTACAAAGCCT 616
Query 609 GTCTATACTCCGGT-TTGAGTATTGGTGGTGCCAATGGTGAAGTCATGCCTGGACAATGG 667
|| | ||| ||||| ||| | ||| ||||| |||||| |||||||||||||| || |||
Sbjct 617 GTATTTACGCCGGTATTG-GCATTTCTGGTGTCAATGGAGAAGTCATGCCTGGCCAGTGG 675
Query 668 GAGTTTCAAATCAGTCCTACTGTTGGTATTGGTGCAGGTGATCAATTATGGGTTGCTCGT 727
||||| ||| || | ||| || ||||||||||| ||||||||| | |||||||||||
Sbjct 676 GAGTTCCAAGTCGGCCCTGTTGAGGGTATTGGTGCTGGTGATCAAGTCTGGGTTGCTCGA 735
Query 728 TACATTCTTGAGAGGATTACTGAGATATGC-GGTGTGATTGTC-TCATTCGATCCAAAAC 785
||| |||| |||||||| |||||||| | | ||||| | |||| | ||||| |||||||
Sbjct 736 TACCTTCTCGAGAGGATCACTGAGATCT-CTGGTGTAAATGTCAGC-TTCGACCCAAAAC 793
Query 786 CAATCCAGGGTGATTGGAATGGAGCAGCCGCTCA-TACGAACTTCAGTAC-AAAATCGAT 843
|| ||| |||||||||||| ||||| | ||||| | | |||| |||||| || | | ||
Sbjct 794 CAGTCCCGGGTGATTGGAACGGAGCTGGAGCTCACTGC-AACTACAGTACTAAGA-CAAT 851
Query 844 GAGGAAAGATGGAGGACTGGATTTGATTAAGGAAGCAATAAAGAAGCTTGAAG-TGAAAC 902
|||||| ||||||||| | || |||| ||| |||| ||| ||||||| || ||||||
Sbjct 852 GAGGAACGATGGAGGATTAGAAGTGATCAAGAAAGCGATAGGGAAGCTT-CAGCTGAAAC 910
Query 903 ACAAACAACACATTGCTGCTTATGGTGAAGGCAACGAGAGGCGTCTCACTGGGAAGCATG 962
||||| |||||||||||||||| ||||||||||||||| | ||||||||||| ||||| |
Sbjct 911 ACAAAGAACACATTGCTGCTTACGGTGAAGGCAACGAGCGTCGTCTCACTGGAAAGCACG 970
Query 963 AAACTGCAGACATCAACACTTTCTCTTGGGGAGTGGCGGATCGTGGAGCATCGGTGAGAG 1022
|||| ||||||||||||||||||||||||||||| || | ||||||||||| || |||
Sbjct 971 AAACCGCAGACATCAACACTTTCTCTTGGGGAGTCGCAAACCGTGGAGCATCCGTTAGAA 1030
Query 1023 TAGGAAGAGATACGGAGAAAGAAGGTAAAGGGTATTTTGAAGATCGAAGGCCTTCGTCTA 1082
| ||| | || || ||||||||||||||||| || || || || |||||||| | ||||
Sbjct 1031 TTGGACGTGACACTGAGAAAGAAGGTAAAGGTTACTTCGAGGACCGAAGGCCAGCTTCTA 1090
Query 1083 ATATGGATCCTTACCTAGTTACCTCCATGATTGCTGAAACCACCATCCTC 1132
| ||||||||||| | || || |||||||| ||||||||||||||||||
Sbjct 1091 ACATGGATCCTTATGTTGTCACTTCCATGATCGCTGAAACCACCATCCTC 1140
> Ahg488515 jgi|Araly1|488515|fgenesh2_kg.6__1649__AT5G16570.1
Length=1229
Score = 553 bits (299), Expect = 1e-156
Identities = 790/1025 (77%), Gaps = 42/1025 (4%)
Strand=Plus/Plus
Query 128 ATCATCGCTGAATACATATGGATCGGTGGCTCTGGAATGGATATTAGAAGCAAAGCCAGG 187
|||||||| || ||||||||||| ||||| || || ||||||| ||||||||||| |||
Sbjct 92 ATCATCGCCGAGTACATATGGATTGGTGGATCGGGCTTGGATATGAGAAGCAAAGCAAGG 151
Query 188 ACATTACCAGGACCAGT-AAGTAATCCAACAAAGCTT-CCAAAATGGAACTACGATGGAT 245
|| || ||||||||||| | | ||||| | || || || |||||||||||||| || |
Sbjct 152 ACTTTGCCAGGACCAGTGACG-GATCCATCGGAG-TTACCGAAATGGAACTACGACGGTT 209
Query 246 CTAGCACCGATCAAGCTGCCGGAGATGATAGTGAAGTCATTC-TTTATCCTCAGGCAATA 304
| ||||||| |||||| |||| ||||| |||||||||| || | || ||||| || ||
Sbjct 210 CAAGCACCGGCCAAGCTCCCGGTGATGACAGTGAAGTCA-TCATCTACCCTCAAGCTATC 268
Query 305 TTTAAGGACCCATTCAGGAAG-GGGAACAACATTCTGGTGATGTGTGATGCTTACAGACC 363
|| || ||||| |||| |||| || |||||||| || ||||||||||| || || | |||
Sbjct 269 TTCAAAGACCCCTTCA-GAAGAGGCAACAACATCCTTGTGATGTGTGACGCATATACACC 327
Query 364 GGCCGGAGATCCAATTCCGACCAACAATAGGCACAAGGCCG-TAAAAATCTTCGATC-AT 421
|||||||| || |||||||| ||||| ||||| ||||| | || ||||| | | |
Sbjct 328 TGCCGGAGAGCCGATTCCGACGAACAAAAGGCATGCGGCCGCT-AAGATCTT-TAGCGA- 384
Query 422 CCC-AATG-TGAAGGCTGAAGAGCCTTGGTTTGGGATAGAGCAAGAATACACATTACTTA 479
||| | || || || ||||| | |||| || || |||||||| ||||| || ||
Sbjct 385 CCCTAGTGTTG-TTGCCGAAGAAACATGGTACGGAATTGAGCAAGAGTACACTTTGCTGC 443
Query 480 AAAAAGATGTGAAGTGGCCACTAGGTTGGCCTCTTGGTGGCTTT-CCTGGTCCTCAGGGA 538
|||| ||| | |||||||| |||||||||| | || || ||| || ||||||||||||
Sbjct 444 AAAAGGATATTAAGTGGCCGGTAGGTTGGCCGGTCGGCGG-TTTCCCAGGTCCTCAGGGA 502
Query 539 CCGTACTATTGTGCAGTAGGTGCAGACAAAGCTTTTGGTCGTGACATTGTCGATGCTCAC 598
|||||||| |||| ||| || ||||||||||| ||||| | ||||| || ||| ||||
Sbjct 503 CCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAGAGACATCGTAGATTCTCAT 562
Query 599 TATAAAGCTTGTCTATACTCCGG-TTTGAGTATTGGTGGTGCCAATGGTGAAGTCATGCC 657
|| ||||||||||| ||| |||| | || | | |||| | || || ||||| |||||
Sbjct 563 TACAAAGCTTGTCTTTACGCCGGAATCGA-TGTCAGTGGAACTAACGGCGAAGTGATGCC 621
Query 658 TGGACAATGGGAGTTTCAAATCAGTCCTACTGTTGGTATTGGTGCAGGTGATCAATTATG 717
|| || |||||||| ||| | |||| || ||||| || | ||| | ||||| | ||
Sbjct 622 CGGCCAGTGGGAGTTCCAAGTTGGTCCCACCGTTGGAATCGCTGCCGCAGATCAGGTCTG 681
Query 718 GGTTGCTCGTTACATTCTTGAGAGGATTACTGAGATAT-GC-GGTG-TGAT-TGTCTCAT 773
||| ||||||||||| ||| ||||||| || || || | || || | || | |||||| |
Sbjct 682 GGTCGCTCGTTACATCCTTCAGAGGATCACAGA-AT-TGGCTGGAGTTGTTCTGTCTC-T 738
Query 774 TCGATCCAAAACCAA-TCCAGGGTGATTGGAATGGAGCAGCCGCTCATACGAACTT-CAG 831
| || || ||||||| ||| ||| ||||||||||| |||| || || || || || |||
Sbjct 739 T-GACCCTAAACCAATTCC-GGGAGATTGGAATGGTGCAGGGGCACACAC-AAATTACAG 795
Query 832 TACAAAATCGATGAGGA-AAGATGGA-GG-ACTGGATTTGATTAAGGAAGCAATAAAGAA 888
||| || ||||||| || |||||||| || || || | || ||| |||| ||| ||||
Sbjct 796 TACGAAGTCGATGA-GAGAAGATGGAGGGTAC--GAGGTCATAAAGAAAGCGATAGAGAA 852
Query 889 GCTTGAAGTGAAACACAAACAACACATTGCTGCTTATGGTGAAGGCAACGAGAGGCGTCT 948
||||| | || ||||| |||||||||||||||||||||||||||| ||| | |||||
Sbjct 853 GCTTGGATTGCGTCACAAGGAACACATTGCTGCTTATGGTGAAGGCAATGAGCGTCGTCT 912
Query 949 CACTGGGAAGCATGAAACTGCAGACATCAACACTTTCTCT-TGGGGAGTGGCGGATCGTG 1007
||| || || ||||| || || || ||||||||||||| | ||||| ||||| | || |
Sbjct 913 CACAGGAAAACATGAGACCGCCGATATCAACACTTTCT-TATGGGGTGTGGCAAACCGAG 971
Query 1008 GAGCATCGGTGAGAGTAGGAAGAGATACGGAGAAAGAAGGTAAAGGGTATTTTGAAGATC 1067
| |||||| | || || || | || || ||||| | || ||||| || ||||||||||
Sbjct 972 GGGCATCGATTAGGGTTGGGCGTGACACTGAGAAGGCTGGAAAAGGATACTTTGAAGATC 1031
Query 1068 GAAGGCCTTCGTCTAATATGGATCCTTAC-CTAGTTACCTCCATGATTGCTGAAACCACC 1126
| ||||| | || || |||||||||||| || || |||||||||||||||||| ||||
Sbjct 1032 GTAGGCCAGCTTCGAACATGGATCCTTACACT-GTAACCTCCATGATTGCTGAATCCACA 1090
Query 1127 ATCCT 1131
|||||
Sbjct 1091 ATCCT 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48873579594
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5