BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48480.1
Length=2294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923183 jgi|Araly1|923183|scaffold_104464.1 3217 0.0
Ahg479268 jgi|Araly1|479268|fgenesh2_kg.3__1969__AT3G17840.1 1031 0.0
Ahg927779 jgi|Araly1|927779|scaffold_300236.1 71.3 3e-11
> Ahg923183 jgi|Araly1|923183|scaffold_104464.1
Length=2005
Score = 3217 bits (1742), Expect = 0.0
Identities = 1924/2012 (96%), Gaps = 12/2012 (1%)
Strand=Plus/Plus
Query 66 tcttc-tctgaatagtcacaatgcgagtcttcttcttcCCCAACTCGTCCATGGCGATtc 124
||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 TCTTCTTCTGAATCGTCACAATGCGAG---ACTTCTTCCCCAACTCGTCCATGGCGATTC 57
Query 125 tctctgttttcctctccctccttctcctctctctccctcttccatcaactcaagatctca 184
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 58 TCTCTGTTTTCCTCTCACTCCTTCTCCTCTCTCTCCCTCTTCCATCAACACAAGATCTCA 117
Query 185 acgccgacagaaccgctcttctctctctcCGCTCCGCCGTCGGAGGCCGTACATTTCGCT 244
||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 118 ACGCCGACAGAGCAGCTCTCCTCTCTCTCCGCTCCGCCGTCGGCGGCCGTACATTTCGCT 177
Query 245 GGAACATCAAACAAACCTCGCCGTGTAACTGGGCCGGTGTCAAATGCGAGAGTAACAGAG 304
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGAACATCAAACAAACCTCACCGTGTAACTGGGCCGGTGTCAAATGCGAGAGTAACAGAG 237
Query 305 TCACCGCTCTCCGCT-TACCCGGCGTTGCTCTCTCCGGTGACATTCCAGAGGGTATTTTC 363
|||| || ||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 238 TCACAGCCCTCCG-TCTACCCGGCGTTTCTCTCTCCGGTGACATTCCAGAGGGTATTTTC 296
Query 364 GGTAACTTAACTCAGCTCCGTACACTTAGCCTTCGTCTCAATGCTCTCTCTGGCTCACTC 423
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 297 GGTAACTTAACTCAGCTCCGTACACTCAGCCTCCGTCTCAATGCTCTCTCTGGCTCACTC 356
Query 424 CCTAAAGATCTCAGTACCTCTTCCAATCTCCGACACCTTTACTTACAAGGAAACAGATTC 483
||||||||||||||||||||||||| |||||| || |||||||| |||||||||||||||
Sbjct 357 CCTAAAGATCTCAGTACCTCTTCCAGTCTCCGGCATCTTTACTTGCAAGGAAACAGATTC 416
Query 484 TCCGGCGAGATACCTGAAGTTTTGTTCAGTCTCAGTCACCTCGTGAGGCTTAATCTCGCT 543
||||||||||||||||||||||| ||||| || | |||||||||||||||||| ||||||
Sbjct 417 TCCGGCGAGATACCTGAAGTTTTATTCAGCCTTACTCACCTCGTGAGGCTTAACCTCGCT 476
Query 544 TCCAACAGCTTCACCGGAGAAATCTCTTCAGGTTTCACGAACCTCACGAAGCTAAAGACT 603
||||| || |||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 477 TCCAATAGTTTCACCGGCGAAATCTCTTCAGGTTTCACGAACCTCAGGAAGCTAAAGACT 536
Query 604 CTGTTTCTAGAGAATAATCAACTCTCTGGTTCAATCCCTGACTTAGATTTACCTTTGGTT 663
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTGTTTTTAGAGAATAATCAACTCTCTGGTTCAATCCCTGACTTAGATTTACCTTTGGTT 596
Query 664 CAATTCAACGTTTCGAATAACTCGTTGAACGGTTCTATACCTAAGAATCTTCAGAGGTTT 723
|||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct 597 CAATTCAATGTTTCGAATAACTCGTTGAACGGATCTATACCTAAGAGTCTTCAGAAGTTT 656
Query 724 GAGTCTGATTCGTTTCTACAGACTTCACTTTGTGGCAAACCGCTTAAACTTTGTCCTGAT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 GAGTCTGATTCGTTTCTACAGACTTCACTTTGTGGCAAACCGCTTAAACTTTGTCCTAAT 716
Query 784 GAAGAAACTGTACCTAGTCAGCCTACTTCTGGTGGAAACAGAACACCACCGAGTGTTGAA 843
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 717 GAAGAAACTGTACCGAGTCAGCCTACTTCTGGTGGAAACAGAACACCACCGAGTGTTG-A 775
Query 844 GG-AAGTGAA-GAGAAGAAGAAAAAGAACAAACTTTCCGGTGGAGCTATTGCCGGAATTG 901
|| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GGAAAGT-AAGGAGAAGAAGAAAAAGAACAAACTTTCCGGTGGAGCTATTGCCGGAATTG 834
Query 902 TGATCGGATGTGTGGTTGGTTTCGCTTTGATTGTTTTGATACTAATGGTGCTCTGTCGGA 961
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||
Sbjct 835 TGATCGGATGTGTGGTTGGTTTTGCTTTGATTGTTTTGATATTAATGGTGCTCTGTAGGA 894
Query 962 AAAAGAGTAATAAGAGATCAAGAGCTGTTGATATCTCAACAATCAAACAGCAAG-AACCT 1020
||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 895 AAAAGGGTAATGAGAGATCAAGAGCTGTTGATATCTCAACAATCAAACAGCAAGAAACC- 953
Query 1021 GAAATTCCTGGAGATAAAGAAGCGGTGGATAATGGTAATGTCTACTCGGTGTCTGCTGCT 1080
|||||||| |||||||||||||||||||||||||| ||||| || |||||| |||||||
Sbjct 954 GAAATTCCCGGAGATAAAGAAGCGGTGGATAATGGAAATGTGTATTCGGTGAGTGCTGCT 1013
Query 1081 GCAGCTGCGGCGATGACTGGAAACGGAAAAGCCAGTGAAGGGAACGGTCCAGCGACGAAG 1140
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1014 GCAGCTGCGGCGATGACTGGAAACGGAAAAGCTAGTGAAGGGAACGGTCCAGCGACGAAG 1073
Query 1141 AAGCTTGTGTTCTTTGGTAACGCGACTAAGGTTTTTGATCTTGAAGACTTGTTGAGAGCT 1200
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1074 AAGCTTGTGTTCTTTGGTAATGCGACTAAGGTTTTCGATCTTGAAGACTTGTTGAGAGCT 1133
Query 1201 TCTGCGGAGGTTCTTGGGAAAGGAACGTTTGGGACGGCGTATAAGGCAGTGCTTGACGCG 1260
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1134 TCTGCGGAGGTTCTTGGGAAAGGAACGTTTGGGACGGCGTATAAGGCGGTGCTTGACGCG 1193
Query 1261 GTGACGGTTGTGGCGGTGAAGAGGTTGAAGGATGTGATGATGGCTGATAAAGAGTTTAAG 1320
|||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1194 GTGACGGTTGTGGCTGTGAAGAGGCTGAAGGATGTAATGATGGCTGATAAAGAGTTTAAG 1253
Query 1321 GAGAAGATTGAGTTGGTTGGTGCGATGGATCATGAGAACTTGGTGCCATTGAGAGCTTAC 1380
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GAGAAGATTGAATTGGTTGGTGCGATGGATCATGAGAACTTGGTGCCATTGAGAGCTTAC 1313
Query 1381 TATTTCAGCAGAGATGAGAAACTTCTTGTCTATGACTTCATGCCTATGGGAAGCTTATCA 1440
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1314 TATTTCAGCAGAGACGAGAAACTTCTTGTCTACGACTTCATGCCTATGGGAAGCTTATCA 1373
Query 1441 GCTCTCTTACATGGAAACAGAGGAGCGGGAAGGAGTCCACTAAACTGGGATGTTAGATCA 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GCTCTCTTACATGGAAACAGAGGAGCGGGAAGGAGTCCACTAAACTGGGATGTTAGATCA 1433
Query 1501 AGAATTGCTATTGGTGCAGCTCGTGGTCTAGACTACCTTCACTCACAAGGCACTTCAACA 1560
|||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| |||
Sbjct 1434 CGAATTGCTATTGGTGCAGGTCGTGGTTTAGCCTACCTTCACTCACAAGGCACTTCGACA 1493
Query 1561 TCTCACGGCAACATCAAATCCTCAAACATCCTCTTAACGAAATCCCACGACGCTAAAGTC 1620
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TCTCACGGCAACATCAAGTCCTCAAACATCCTCTTAACGAAATCCCACGACGCTAAAGTC 1553
Query 1621 TCAGACTTTGGCTTAGCCCAGCTCGTGGGATCATCAGCAACAAATCCAAACCGCGCTACG 1680
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1554 TCAGACTTTGGCTTAGCTCAGCTCGTGGGATCATCTGCAACAAATCCAAACCGCGCTACG 1613
Query 1681 GGTTACCGTGCTCCAGAAGTAACCGATCCGAAACGCGTGTCGCAGAAGGGTGACGTGTAC 1740
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1614 GGTTACCGTGCACCAGAAGTAACTGATCCGAAACGCGTGTCGCAGAAGGGTGACGTGTAC 1673
Query 1741 AGTTTCGGAGTGGTGTTGCTTGAGCTGATCACGGGTAAAGCTCCTTCGAACTCGGTGATG 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 AGTTTCGGAGTGGTGTTGCTTGAGCTGATCACGGGTAAAGCTCCTTCGAACTCGGTGATG 1733
Query 1801 AACGAGGAAGGAGTTGATTTGCCGAGATGGGTTAAATCGGTGGCGAGAGATGAGTGGAGG 1860
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1734 AACGAGGAAGGAGTGGATTTGCCCAGATGGGTTAAATCGGTGGCGAGAGATGAGTGGAGA 1793
Query 1861 AGAGAAGTTTTCGACTCGGAGTTGCTTAGTTTGGCGACGGATGAAGAAGAGATGATGGCG 1920
||||| ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1794 AGAGAGGTTTTTGACTCGGAGTTGCTTAGTTTGGCGACGGAGGAAGAAGAGACGATGGCG 1853
Query 1921 GAGATGGTGCAGCTAGGGCTTGAGTGTACGTCACAGCATCCGGACCAGAGGCCGGAGATG 1980
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1854 GAGATGGTGCAGCTAGGGCTTGAGTGTACGTCACAGCATCCGGACAAGAGGCCGGAGATG 1913
Query 1981 TCGGAAGTGGTTAGGAAGATGGAGAATTTGCGACCTTATTCTGGTTCAGACCAAGTGAAC 2040
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1914 TCGGAAGTGGTTAGGAAGATGGAGAATTTGCGACCTTATTCTGGGTCAGACCAAGTGGAC 1973
Query 2041 GAAGCTGATTAAGTCAAAGATTCTTAATTGTT 2072
|||||||||||||||||||||| |||||||||
Sbjct 1974 GAAGCTGATTAAGTCAAAGATTGTTAATTGTT 2005
> Ahg479268 jgi|Araly1|479268|fgenesh2_kg.3__1969__AT3G17840.1
Length=2240
Score = 1031 bits (558), Expect = 0.0
Identities = 1505/1950 (77%), Gaps = 113/1950 (6%)
Strand=Plus/Plus
Query 133 ttcctctccctccttctcctctctctccctcttccatcaactc-aagatctcaacgccga 191
||||||||| | |||||||||||||| |||||||| |||| || ||||||| ||||||
Sbjct 84 TTCCTCTCCATTCTTCTCCTCTCTCTTCCTCTTCCTTCAA-TCGGAGATCTCGCCGCCGA 142
Query 192 cagaa-ccgctcttctctctctcCGCTCCGCCGTCGGAGGCCGTACATTTCGCTGGAACA 250
|| || |||||||||||||||| || ||||||||||| || || ||||| | |||| ||
Sbjct 143 CA-AATCCGCTCTTCTCTCTCTTCGTTCCGCCGTCGGTGGTCGCACATTACTCTGGGACG 201
Query 251 TCAAACAAACCTCGCCGTGTAACTGGGCCGGTGTCAAATGCG-AGAGT-AACAGAGTCAC 308
||||||||||||| || || |||||| |||| ||| ||||| || || | | || ||
Sbjct 202 TCAAACAAACCTCACCATGCAACTGGACCGGCGTCGTATGCGAAG-GTGGTC-GTGTTAC 259
Query 309 CGCTCTCCG-CTTACCCGGCGTTGCTCTCTCCGGTGACATTCCAGAGGGTATTTTCGGTA 367
|||||| || ||| ||||||| ||||||||| | || || ||||||||||||||||
Sbjct 260 CGCTCTTCGTCTT-CCCGGCGAAAAGCTCTCCGGTCATATACCGGAGGGTATTTTCGGTA 318
Query 368 ACTTAACTCAGCTCCGTACACTTAGCCTTCGTCTCAATGCTCTCT-CTGGCTCACTC--C 424
| ||||||||||| ||||| |||||||| |||||||||| ||| | |||| | |||| |
Sbjct 319 ATTTAACTCAGCTACGTACGCTTAGCCTCCGTCTCAATGGTCT-TACTGG-T-ACTCTTC 375
Query 425 CTAAAGATCTCAGTACCT-CTTCCAATCTCCGACACCTT-TACTTACAAGGAAACAGATT 482
|| ||||| | | || | ||| |||| || | || ||| | ||||| ||||||||
Sbjct 376 CTTTGGATCTTGGAAGCTGC-TCCGATCTTCGGC-GTTTGTACCTGCAAGGTAACAGATT 433
Query 483 CTCCGGCGAGATACCTGAAGTTTTGTTCAGTCTCAGTCACCTCGTGAGGCTT-AATCTCG 541
|||||| ||||| || || |||||||| ||||| ||| |||| || ||| || ||||| |
Sbjct 434 CTCCGGTGAGATTCCGGAGGTTTTGTTTAGTCTTAGTAACCTTGTTAGG-TTGAATCTAG 492
Query 542 CTTCCAACAG-CTTCACCGGAGAAATCTCTTCA-GGTTTCACGAACCTCACGAAGCTAAA 599
| || | || ||||| || ||||||||| ||||| | ||||| || | ||| ||
Sbjct 493 CGGAGAA-TGAATTTACCGGCGAGATCTCTTCAGGGTTT-AAAAACCTTACTAGGCTTAA 550
Query 600 GACTCTGTTTC-TAGAGAATAATCAA-CTCTCTGGTTCAATCCCTGACT-TAGATTTACC 656
||||||| | | | || ||||| ||| |||||||| || | | ||| | | ||||| ||
Sbjct 551 GACTCTG-TACTTGGAAAATAA-CAAGCTCTCTGGCTCTCTTCTTGA-TATGGATTTGCC 607
Query 657 TTTGGTTCAATTCAACGTTTCGAATAACTCGTTGAACGGTTCTATACCTAAGAATCTTCA 716
||||| ||| ||||||||||| ||||||| ||||||||| ||||||||||||| ||| ||
Sbjct 608 TTTGGATCAGTTCAACGTTTCTAATAACTTGTTGAACGGATCTATACCTAAGAGTCTGCA 667
Query 717 GAGGTTTGAGTCTGATTCGTTTCTACAG-ACTTCACTTTGTGGCAAACCGCTTAAACTTT 775
|| ||||| |||||||||||| | | |||||||| ||||||||||||||| | |
Sbjct 668 GAAATTTGATTCTGATTCGTTTGT-GGGAACTTCACTCTGTGGCAAACCGCTTGTTGTCT 726
Query 776 GTC-CTGATGAAGAAACTGTACCTAGTCAGCCTACTTCTGGTGGAAACAGAACACCACCG 834
| | || |||||| |||||| ||||| ||||| | ||||| ||| || | | || | |
Sbjct 727 G-CTCTAATGAAGGAACTGTGCCTAGCCAGCCAATTTCTGTTGG-AA-A-TATTCC-CGG 781
Query 835 -AGTGTTGAAGGAAGTGAA-GAGAAGAAGAAAAAGAACAAACTTTCCGGTGGAGCTATTG 892
| ||||||||||||| || | | |||||||||| || || |||||||||||||| || |
Sbjct 782 AACTGTTGAAGGAAGT-AAGGGGGAGAAGAAAAATAAGAAGCTTTCCGGTGGAGCAATAG 840
Query 893 CCGGAATTGTGATCGGATGTGTGGTTGGTTTCGCTTTGATTGTTTTGATACTAATGGTGC 952
| ||||| ||||| |||||||| ||||||||| | |||||||| || | | ||||| |
Sbjct 841 CTGGAATAGTGATTGGATGTGTTGTTGGTTTCTCCCTGATTGTTCTGGTTTTGATGGTTC 900
Query 953 TCTGTCGGAAAAAGAGTAA-TAAGAGATCAA-GAGCTGTTGATATCT-CAACAATCAAAC 1009
||| | |||||||| | || || ||| ||| | || | || || | |||| ||||| |
Sbjct 901 TCTTTAGGAAAAAGGGGAACGAA-AGAACAAGGGGC-ATCGACAT-TGCAACCATCAAGC 957
Query 1010 AGCAAGAACCTGAAATTCCTGGAGATAAAGAAGCGGTGGATAATGGTA-ATGTCTACTCG 1068
||| ||| |||||||||||| || |||| || |||| || | | | | | | |
Sbjct 958 AGCGTGAAGTTGAAATTCCTGGCGAGAAAGCGGCCGTGG--AA--GCACA-GGAGAATAG 1012
Query 1069 GTG-TCTGCTGCTGCAGCTGCGGCGATGACTGGAAACGGAAAAGCCAGT-GAAGGGAACG 1126
| | | || || || | | | | || | | | |||| | || |||| ||||
Sbjct 1013 GAGCTATGGAAATG-AG-TAC-TCCCCGGCT-GCGA-TG-AAAG-CGGTGGAAGTGAACA 1065
Query 1127 GTCCAGCGACGAAGAAGCTT-GTGTTCTTTGGTAACGCGACTAAGGTTTTTGATCTTGAA 1185
|| ||| || |||||| || ||||| ||||| || ||||| |||||||| ||||||||
Sbjct 1066 GTTCAGGGATGAAGAA-ATTAGTGTTTTTTGGGAATGCGACAAAGGTTTTCGATCTTGAG 1124
Query 1186 GACT-TGTTGAGAGCTTCTGCGGAGGTTCTTGGGAAAGGAACGTTTGGGACGGCGTATAA 1244
|| | ||||||||||||| ||||||||||| |||||||||||||| ||||| || |||||
Sbjct 1125 GA-TCTGTTGAGAGCTTCGGCGGAGGTTCTGGGGAAAGGAACGTTCGGGACAGCTTATAA 1183
Query 1245 GGCAGTGCTTGACGCGGTGACGGTT-GTGGCGGTGAAGAGGTTGAAGGATGTGATGATGG 1303
|| ||||||||||||||||| || ||||| |||||||| |||||||||||| |||||
Sbjct 1184 AGCGGTGCTTGACGCGGTGAC-ATTGGTGGCTGTGAAGAGACTGAAGGATGTGACGATGG 1242
Query 1304 CTGATAAAGAGTTTAAGGAGAAGATTGA-GTTGGTTGGTGCGATGGATCATGAGAACTTG 1362
| || | |||||| ||||||||||| || ||| ||||| |||||||| ||||||||||||
Sbjct 1243 CGGACAGAGAGTTCAAGGAGAAGATCGAGGTT-GTTGGGGCGATGGACCATGAGAACTTG 1301
Query 1363 GTGCCATTGAGAGCTTACTATTTCAGCAGAGATGAGAAACTTCTTGTCTATGACTTCATG 1422
||||| |||||||| ||||||| ||| |||| ||||| || ||||||||||||||||||
Sbjct 1302 GTGCCCTTGAGAGCGTACTATTACAGTGGAGACGAGAAGCTGCTTGTCTATGACTTCATG 1361
Query 1423 CCTATGGGAAGCTTATCAGCTCTCTTACATGGAAACAGAGGAGCGGGAAGGAGTCCACTA 1482
|||||||||||||| |||||||||||||| ||||||| ||| || || || |||| |
Sbjct 1362 CCTATGGGAAGCTTGTCAGCTCTCTTACACGGAAACAAAGGCGCAGGCCGGCCTCCATTG 1421
Query 1483 AACTGGGATGTTAGATCAAGAATTGCTATTGGTGCAGCTCGTGGTCT-AGACTACCTTCA 1541
|||||||| || |||||| | || || |||| || |||||||| || |||||| |||||
Sbjct 1422 AACTGGGAAGTCAGATCAGGCATCGCCCTTGGAGCTGCTCGTGG-CTTAGACTATCTTCA 1480
Query 1542 CTCACAAGGC--ACTTCAACATCTCACGGCAACATCAAATCCTCAAACATCCTCTTAACG 1599
|||||||| | ||| | | |||||||| ||| |||| ||||| || ||||| |||||
Sbjct 1481 CTCACAAGACCCACTG-AGC-TCTCACGGAAACGTCAAGTCCTCCAATATCCTTTTAAC- 1537
Query 1600 AAA-TCCCACGACGCTAA-AGTCTCAGACTTTGGCTTAGCCCAGCTCGTGGGATCATCAG 1657
||| ||||| ||||| | ||| || || |||||| | || ||||| || | | |||
Sbjct 1538 AAACTCCCATGACGC-ACGAGTGTCTGATTTTGGCCTGGCTCAGCTTGTAAGCGCCTCAT 1596
Query 1658 CAACAAATCCAAACCGCGCTAC-GGGTTACCGTGCTCCAGAAGTAACCGATCCGAAACGC 1716
| || | |||||||| || || |||| ||||||| ||||||||||| || || || ||
Sbjct 1597 CCACTACCCCAAACCGGGCCACTGGGT-ACCGTGCGCCAGAAGTAACTGACCC-AAG-GC 1653
Query 1717 GTGTCGCA--GAAGG-GTGACGTGTACAG-TTTCGGAGTGGTGTTGCTTGAGCTGATCAC 1772
||||| || ||| | | ||||||||||| ||| || ||||| ||||| ||||| ||||
Sbjct 1654 GTGTCTCACAGAAAGCG-GACGTGTACAGCTTT-GGTGTGGTATTGCTGGAGCTTCTCAC 1711
Query 1773 GGGTAAAGCTCCTTCGAACTCGGTGATGAACGAGGAAGGAGTTGATTTGCCGAGATGGGT 1832
|| ||||| || || |||||||||||||| ||||||||| | |||||| |||| |||||
Sbjct 1712 TGGAAAAGCGCCATCTAACTCGGTGATGAATGAGGAAGGAATGGATTTGGCGAGGTGGGT 1771
Query 1833 TAAATCGGTGGCGAGAGATGAGTGGAGGAGA-GAAGTTTTCGACTCGGAGTTGCTTAGTT 1891
| || ||||||||||| |||||||||| | || ||||| ||||||||| || | |||
Sbjct 1772 GCATTCAGTGGCGAGAGAGGAGTGGAGGA-ATGAGGTTTTTGACTCGGAGCTGATGAGTA 1830
Query 1892 TGGCGAC-G-GAT---GAAG-AAGA-GATGATGGCGGAGATGGTGCAGCTAGGGC-TTGA 1943
| | ||| | | | | | |||| || ||||||||| ||| ||||||| |||| ||||
Sbjct 1831 TCGAGACAGTGGTCTCGGTGGAAGAAGA-GATGGCGGAAATGCTGCAGCT-GGGCATTGA 1888
Query 1944 GTGTAC-GTCACAGCATCCGGACCAGAGGCCGG-AGATG-TCGGAAGTGGTTAGGAAGAT 2000
||||| | ||||| || ||| || |||| | | ||| | ||| ||||| |||| |||
Sbjct 1889 CTGTACAGAG-CAGCACCCAGACAAGCGGCCAGTA-ATGGT-GGAGGTGGTGAGGAGGAT 1945
Query 2001 GGAGAATTTGCGACCTTATTCTGGTTCAGA 2030
|| | ||||| || || | ||||||||
Sbjct 1946 CCAGGAGTTGCG-CCA-AT-CGGGTTCAGA 1972
> Ahg927779 jgi|Araly1|927779|scaffold_300236.1
Length=1926
Score = 71.3 bits (38), Expect = 3e-11
Identities = 49/54 (91%), Gaps = 2/54 (4%)
Strand=Plus/Plus
Query 869 ACAAACTT-TCCGGTGGAGCTATTGCCGGAATTGTGATCGGATGTGTGGTTGGT 921
||||| || |||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 759 ACAAA-TTATCCGCCGGAGCTATTGCCGGAATTGTGATCGGATGTGTTGTTGGT 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86388675660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5