BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48490.1
Length=4238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336969 jgi|Araly1|336969|fgenesh1_pg.C_scaffold_1003534 5073 0.0
Ahg904752 jgi|Araly1|904752|Al_scaffold_0003_1880 2403 0.0
> Ahg336969 jgi|Araly1|336969|fgenesh1_pg.C_scaffold_1003534
Length=3780
Score = 5073 bits (2747), Expect = 0.0
Identities = 2971/3081 (96%), Gaps = 8/3081 (0%)
Strand=Plus/Plus
Query 793 GTCAATTCAAGGTATCACCTACCATATCTGGCCCTGAAGGAAGCGCAGAAGTTTGCACAC 852
||||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||||| |
Sbjct 608 GTCAATTTAAGGTATCACCTAGCATATCTGGCCCTGTAGGAAGCTCAGAAGTTTGCAC-C 666
Query 853 C-AGAGAATTCATACGATTTGGATGATCCAAAAGAGTCAGACTCGCCTCGTTATCAAGCT 911
| |||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 667 CTAGAGAATTCATATGAATTGGAAGATCCAAAAGAGTCAGAATCGCCTCGTTATCAAGCT 726
Query 912 TTACTTCGTATGACCAGTGCTCCAAGAAAGAGGTTTCCTGGTGATATCAAGAGCTTTTCT 971
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 727 TTACTTCGTATGACCAGTGCTCCAAGAAAGAGGTTTCCTGGTGACATCAAGAGCTTTTCT 786
Query 972 CATGAGCTGAACTCGAAAGGTGTTCGGCCTTTTCCATTATGGAAGCCTCGTAGGTTAAAT 1031
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 787 CATGAGCTGAACTCGAAAGGGGTTCGGCCTTTTCCATTATGGAAGCCTCGTAGGTCAAAT 846
Query 1032 AACTTGGAGGATATCTTGAATCTAATTCGAACCAAGTTTGATAAAGCAAAGGAAGAAGTA 1091
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 847 AACTTGGAGGAAATCTTGAATCTAATTCGAACCAAATTTGATAAAGCAAAGGAAGAAGTA 906
Query 1092 AATTCGGACCTTTTTGCATTTGGTGGGGACCTGTTGGATATTTATGATAAAAACAAAGAA 1151
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 907 AATTCGGACCTTTTTGCATTTAGTGGGGATCTGTTGGATATTTATGATAAAAACAAAGAA 966
Query 1152 AGTCATCCTGAGTTGCTGGTTACAATTGAAGACTTGTTGGTTTTGGCAAAAACTTGTGCT 1211
||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct 967 AGTCATCCTGAGTTGCTGGAAACAATTGAAGACTTGTTGGTTTTGGCAGAGACTTGTGCT 1026
Query 1212 AAGACTACTTCAAAAGAGTTCTGGCTTCAGTGTGAGGGCATAGTGCAAGACTTAGATGAT 1271
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1027 AAGACTACTTCGGGAGAGTTCTGGCTTCAGTGTGAGGGCATAGTACAAGACTTAGATGAT 1086
Query 1272 AGACGTCAAGAGCTTCCTCCGGGCGTGCTCAAGCAGCTTCACACTCGGATGCTTTTTATC 1331
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1087 AGACGTCAAGAGCTTCCTCCGGGCGTGCTCAAGCAACTTCACACTCGGATGCTTTTTATC 1146
Query 1332 CTTACCAGATGTACCAGATTACTTCAATTTCATAAGGAAAGTTGGGGGCAGGAGGAAGAT 1391
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1147 CTTACCAGATGTACCAGATTACTTCAGTTTCATAAGGAAAGTTGGGGGCAGGAGGAAGAT 1206
Query 1392 G-CTGTACAACTACGTCAGTCAGGAGTCTTGCATTCTGCCGATAAAAGAGACCCCACTGG 1450
| || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1207 GCCT-TACAACTACGTCAGTCAAGAGTCTTGCATTCTGCCGATAAAAGAGTCCCCACTGG 1265
Query 1451 AGAAGTTAGGGACGGGAAG-GGTTCAAGTACTGCCAATGCCTTAAAGGTACCATCCACCA 1509
|||||||||||||||| || |||||||||||||| ||||||| ||||| |||||||||||
Sbjct 1266 AGAAGTTAGGGACGGG-AGCGGTTCAAGTACTGCTAATGCCTCAAAGGCACCATCCACCA 1324
Query 1510 AGAAAGCTTATAGTCAGGAGCAGCGTGGTTTGAATTGGATCGAGGGCTTTTTTGTTCGTC 1569
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1325 AGAAAGCTTATAGTCAGGAGCAGCGTGGTTTGAATTGGAACGAGGGCTTTGTTGTTCGTC 1384
Query 1570 CAGCTCCTCTCTCTTCTCCGTACAATGAAACGTCAAAGGATTCTGAATCGCCTGCAAACA 1629
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1385 CAGCTCCTCTCTCTTCTCCGTACAAAGAAATGTCAAAGGATTCTGAATCGCCTGCAAACA 1444
Query 1630 TCGATAAAATGTCTTCTTGGAAAAGACTTCCATCTCCAGCATCGAAGGGTGTACAAGAAG 1689
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1445 TCGATAAAATGTCTTCTTGGAAAAGACTTCCATCTCCGGCATCGAAGGGTGTACAAGAAG 1504
Query 1690 CTGCAGTATCGAAAGAGCAGAATGATCGCAAAGTTGAACCTCCACAGGTCGTTAAAAAGC 1749
|||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1505 CTGCAGTATCTAAAGAGCAGAATGATAGCAAAGTTGAACCTCCACAGGTAGTTAAAAAGC 1564
Query 1750 TAGTAGCTATAAGTGATGATATGGCTGTTGCTAAGTTGCCAGAAGTTTCTTCCGCAAAAG 1809
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1565 TAGTAGCTATAAGTGATGATATGGCTGTTGCGAAGTTGCCAGACGTTTCTTCCGCAAAAT 1624
Query 1810 CGTCCCAGGAACATATGTCCAAGAATCGGCATAATATTTCGTGGGGTTATTGGGGGCATC 1869
|||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |||
Sbjct 1625 TGTCCCAGGAACATATGCCCAAGAATCGGCACAATATTTCTTGGGGTTATTGGGGGGATC 1684
Query 1870 AGTCATGTATTTCTGAGGAAAGTTCAATTATTTGCCGTATATGCGAGGAGGAAATTCCCA 1929
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 AGTCATGTATCTCTGAGGAAAGTTCAATTATTTGCCGTATATGCGAGGAGGAAATTCCCA 1744
Query 1930 CCACCCATGTGGAAGATCACTCTAGAATCTGTGCATTGGCTGATAAATATGACCAAAAGG 1989
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1745 CCACCCATGTGGAAGATCACTCTAGAATTTGTGCATTGGCTGATAAATATGACCAAAAGG 1804
Query 1990 GTGTGGGTGTTGACGAGCGGCTGATGGCAGTTGCAGTAACTCTTGAAAAGATAACAGACA 2049
||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
Sbjct 1805 GTGTGAGTGTTGACGAGCGGCTGGTGGCAGTTGCTGTAACTCTTGAAAAGATAACAGAGA 1864
Query 2050 A-TGTCATACAAAAGGATAGCCTAGCAGCGGTAGAAAGCCCAGAAGGTATGAAAATATCT 2108
| | ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1865 ACT-TCATACAAAAGGATAGCCTAGCAGCAGTAGAAAGCCCAGATGGTATGAAAATATCT 1923
Query 2109 AACGCGAGTTTGACCGAAGAACTTGATGTTCTCTCCCCAAAGCTAAGTGATTGGTCGCGA 2168
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 AACGCGAGCTTGACCGAAGAACTTGATGTTCTCTCCCCAAAGCTAAGTGATTGGTCGCGA 1983
Query 2169 AGAGGGTCGGAGGACATGCTTGACTGTTTTCCGGAGACTGATAATTCAGTTTTCATGGAT 2228
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1984 AGAGGGTCGGAGGACATGCTTGACTGTTTTCCGGAGGCTGATAATTCAGTTTTCATGGAT 2043
Query 2229 GATATGGGATGCTTACCTTCAATGTCATGCAGAACTCGTTTTGGTCCCAAGTCTGATCAA 2288
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2044 GATATGAGATGTTTACCTTCAATGTCATGCAGAACTCGTTTTGGTCCCAAGTCTGATCAA 2103
Query 2289 GGCATGGCTACTTCATCTGCCGGTAGCATGACTCCTAGGTCCCCTATTCCAACCCCTAGA 2348
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2104 GGCATGACTACTTCATCTGCCGGTAGCATGACTCCTAGATCCCCTATTCCAACCCCTAGA 2163
Query 2349 CCCGATCCAATTGAATTGTTATTAGAAGGCAAGGGTACATTCCATGACCAGGATGATTTC 2408
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2164 CCCGATCCAGTTGAATTGTTATTAGGAGGCAAGGGTACATTCCATGACCAGGATGATTTC 2223
Query 2409 CCTCAGATGAGTGAACTTGCTGACATTGCAAGATGCGCAGCAAATGCCATTCCTGTTGAT 2468
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 2224 TCTCAGATGAGTGAACTTGCTGACATTGCAAGATGCGCAGCAAATCCCATTCCAGTTGAT 2283
Query 2469 GATCAATCTATTCAGCTTTTACTTTCCTGTCTTGAAGACTTGAGAGTTGTCATTGACCGC 2528
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2284 GATCAATCTATTCAGCTTTTACTTTCTTGTCTTGAAGACTTGAGAGTTGTCATTGACCGC 2343
Query 2529 AGAAAGTTTGATGCACTTATAGTAGAAACTTTTGGAACACGCATAGAAAAGTTGATACAG 2588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2344 AGAAAGTTTGATGCACTTATAGTAGAAACTTTTGGAACACGCATAGAAAAGTTGATACAG 2403
Query 2589 GAAAAGTATCTTCAGCTGTGCGAGCTTATGGATGATGAAAAAGGTACCATAATTGATGAA 2648
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2404 GAAAAGTATCTTCAGCTGTGCGAGCTTATGGATGATGAAAAAGGTACCATGATTGATGAA 2463
Query 2649 GATGCTCCTTTGGAAGATGATGTTGTTCGCAGCTTGAGGACCAGTCCAGTACATCTGCGG 2708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2464 GATGCTCCTTTGGAAGATGATGTTGTTCGCAGCTTGAGGACCAGTCCAGTACATCTGCGG 2523
Query 2709 GACCGCATATCCATAGATGATTTTGAGGTCATGAAGTCAATTAGTAGGGGAGCTTTTGGG 2768
||||||||||||||||||||||||||| ||| | || |||||||||||||||||||||||
Sbjct 2524 GACCGCATATCCATAGATGATTTTGAGCTCAGGGAGACAATTAGTAGGGGAGCTTTTGGG 2583
Query 2769 CATGTTATTTTGGCTCGTAAGAACACTACAGGAGACCTATTTGCAATTAAGGTTCTGAGG 2828
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2584 CATGTTATCTTGGCTCGTAAGAACACTACAGGAGACCTATTTGCAATTAAGGTTCTGAGG 2643
Query 2829 AAGGCAGATATGATCCGCAAGAATGCTGTGGAAAGTATACTTGCCGAACGAGATATTTTG 2888
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2644 AAGGCAGATATGATCCGCAAGAATGCTGTGGAAAGTATACTTGCTGAACGAGATATTTTG 2703
Query 2889 ATCAACGCCCGCAATCCCTTTGTGGTTCGATTCTTCTATTCTTTTACTTGTAGCGAAAAC 2948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2704 ATCAACGCCCGCAATCCCTTTGTGGTTCGATTCTTCTATTCTTTTACTTGTAGCGAAAAC 2763
Query 2949 CTGTATCTTGTGATGGAATACCTCAATGGAGGGGATTTTTATTCAATGTTGAGAAAAATA 3008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2764 CTGTATCTTGTGATGGAATACCTCAATGGAGGGGATTTTTATTCAATGTTGAGAAAATTA 2823
Query 3009 GGTTGCTTGGATGAAGCTAATGCCCGTGTATACATTGCAGAAGTTGTCCTTGCTTTGGAA 3068
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2824 GGTTGCTTGGATGAAACTAATGCCCGTGTATACATTGCAGAAGTTGTCCTTGCTTTGGAA 2883
Query 3069 TATTTACACTCTGAGGGTGTTGTGCATCGTGATTTGAAGCCTGACAATTTGTTGATTGCA 3128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2884 TATTTACACTCTGAGGGTGTTGTGCATCGTGATTTGAAGCCTGACAATTTGTTGATTGCA 2943
Query 3129 CATGATGGTCATGTTAAGTTGACGGATTTTGGGCTTTCAAAAGTTGGTCTCATCAACAAC 3188
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 2944 CATGATGGTCATGTTAAGTTGACAGATTTTGGGCTTTCAAAAGTTGGTCTCATCAACAGC 3003
Query 3189 ACTGATGATCTCTCTGGTCCAGTTTCCAGTGCAACGTCGCTGCTTGTTGAGGAGAAACCA 3248
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3004 ACCGATGATCTCTCTGGTCCAGTTTCCAGTGCAGTGTCGCTGCTTGTTGAGGAGAAACCA 3063
Query 3249 AAATTGCCAACATTGGACCATAAGCGGTCTGCGGTGGGCACTCCTGACTACTTAGCGCCA 3308
|||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 3064 AAATTGCCGACATTGGGGCATAAGCGGTCTGCAGTGGGCACTCCTGACTACTTAGCGCCA 3123
Query 3309 GAAATCCTTTTGGGGACAGGACATGGTGCAACTGCGGATTGGTGGTCTGTTGGCATCATT 3368
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3124 GAAATTCTTTTGGGGACAGGACATGGTGCAACTGCGGATTGGTGGTCTGTTGGCATCATT 3183
Query 3369 TTGTACGAATTCCTTGTGGGGATTCCGCCCTTCAATGCTGACCATCCTCAGCAAATCTTT 3428
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3184 TTGTATGAATTCATTGTGGGGATTCCGCCCTTCAATGCTGACCATCCTCAGCAAATCTTT 3243
Query 3429 GACAATATTCTCAACCGTAATATACAATGGCCTCCTGTTCCTGAAGATATGAGCCATGAA 3488
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3244 GACAATATTCTCAACCGAAATATACAATGGCCTCCTGTTCCTGAAGATATGAGCCATGAA 3303
Query 3489 GCCCGTGATTTGATAGATCGGTTATTAACGGAAGATCCCCATCAGAGACTTGGAGCTAGA 3548
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3304 GCCCGTGATTTGATAGATCGGTTATTAACAGAAGATCCCCATCAGAGACTTGGAGCTAGA 3363
Query 3549 GGGGCGGCTGAGGTCAAGCAGCACAGCTTCTTTAAAGACATAGACTGGAACACTCTAGCA 3608
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 3364 GGGGCGGCTGAGGTCAAGCAGCACATCTTCTTTAAAGACATAAACTGGAACACTCTAGCA 3423
Query 3609 CAACAGAAGGCTGCATTTGTGCCGGACTCAGAAAATGCTTTTGACACAAGTTACTTCCAG 3668
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3424 CAACAGAAGGCTGCATTTGTGCCGGATTCAGAAAATGCTTTTGACACAAGTTACTTCCAG 3483
Query 3669 AGTCGCTACTCGTGGAACTATTCGGGTGAGCGATGTTTTCCAACCAATGAGAATGAAGAT 3728
||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct 3484 AGTCGCTACTCGTGGAACTATTCGGATGAGCAATGTTTTCCTCCCAATGAGAATGAAGAT 3543
Query 3729 TCTAGTGAAGGTGACAGCTTGTGTGGCAGTAGTGGTCGCTTGAGCAATCATCACGACGAG 3788
| |||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 3544 TGTAGTGACGGTGACAGCTTGAGTGGCAGTAGTGGTCGCTTAAGCAATCATCACGACGAG 3603
Query 3789 GGGGTTGATATACCCTGCGGACCTGCGGAGTTCGAAACTAGTGTCTCTGAAAATTACCCA 3848
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3604 GGGGTTGATATACCCCGTGGACCTGCGGAGTTCGAAACTAGTGTCTCTGAAAATTACCCA 3663
Query 3849 TTCGATAATTTCTCGTTCAAG 3869
|||||||||||||||||||||
Sbjct 3664 TTCGATAATTTCTCGTTCAAG 3684
Score = 693 bits (375), Expect = 0.0
Identities = 456/495 (92%), Gaps = 5/495 (1%)
Strand=Plus/Plus
Query 249 ATGGTGTTCAAGAGCAAACTCTTCTTCTCCTCGAAGAAATCGAGATCTTCTAGTCCCAGT 308
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1 ATGGTGTTCAAGAGCAAACTCTTCTTCTCCTCGAAGAAATCGGGATCTTCTAGTCCCAAT 60
Query 309 AGCAGCAACAGTCCACGATCTGTTGGCTCCGATTCTCCGATTCGATCCGATAAGAAGAAA 368
|||| ||||||||||||||||||||||| ||||||||| | |||||||||||||||||
Sbjct 61 AGCAATAACAGTCCACGATCTGTTGGCTCTAATTCTCCGAGTGGATCCGATAAGAAGAAA 120
Query 369 CCGAAATCAAATTCTAAAGAGGAAACTCGGAGCCCTAATACGAAGAAGCAT-GTCTCAGC 427
|||||||||||||| ||||||||||||||||||||||||||||||||| || || ||| |
Sbjct 121 CCGAAATCAAATTCCAAAGAGGAAACTCGGAGCCCTAATACGAAGAAGGATGGT-TCATC 179
Query 428 GAAGGGTAAAGAAGCTTCGTTAGAAGTTCACTCTTCTAGTCCAGGCAAATCAAACTCGTC 487
|||||||||||||||||||| |||||||| ||||||||||| || ||||| |||| |||
Sbjct 180 AAAGGGTAAAGAAGCTTCGTTCGAAGTTCAGTCTTCTAGTCCCGGGAAATCGAACTTGTC 239
Query 488 ATCTTCTGGTTCCGAGGCGAAGAAACCAATTACTGAAACGCCGGCGACTTCTGACGTGAA 547
|||||||||||| |||| ||||||||||||| ||||||||| ||| | ||| |||||||
Sbjct 240 ATCTTCTGGTTCTGAGGTGAAGAAACCAATTGTTGAAACGCCAGCGCCGTCTAACGTGAA 299
Query 548 GGAGGAATCGCCGGCGTCGGTTTCGCCTATCATGGCTTCATCTTTGGGTTTGAATAGAAT 607
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 GGAGGAAT---CGGCGTCGGTTTCGCCTATTATGGCTTCATCTTTGGGTTTGAATAGAAT 356
Query 608 CAAGACGAGGTCTGGCCCGTTGCCGCAGGAAAGTTTTTTCAGTTTTGAGAATGATTATGC 667
||||||||||||||| ||||| |||||||||| ||||||| |||||||||||||| ||||
Sbjct 357 CAAGACGAGGTCTGGTCCGTTACCGCAGGAAACTTTTTTCGGTTTTGAGAATGATAATGC 416
Query 668 AATTCCGGTCTTACCGTGTTACAAGTTGTCGAAGTTGGATACTGGCAAGAAGGAAGCTGG 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AATTCCGGTCTTACCGTGTTACAAGTTGTCGAAGTTGGATACTGGCAAGAAGGAAGCTGG 476
Query 728 AAGCAGCAAGGTAGA 742
||| |||||| ||||
Sbjct 477 AAGTAGCAAGCTAGA 491
> Ahg904752 jgi|Araly1|904752|Al_scaffold_0003_1880
Length=3984
Score = 2403 bits (1301), Expect = 0.0
Identities = 2510/3074 (82%), Gaps = 161/3074 (5%)
Strand=Plus/Plus
Query 819 TCTGGCCC-TGAAGGAAGCGCAGAAGTTTGCACACCAGAGAATTCATACGATTTGGATGA 877
|||||||| | || ||| |||| ||||||| |||||||||||||| || | ||| |
Sbjct 733 TCTGGCCCTTTAA-GAAATTCAGACTTTTGCACCCCAGAGAATTCATATGAATGGGAAAA 791
Query 878 TCCAAAAGAGTCAGACTCGCCTCGTTATCAAGCTTTACTTCGTATGACCAGTGCTCCAAG 937
||| ||||||||||| || || ||||||||||| |||||||||||||||||||||||| |
Sbjct 792 TCCCAAAGAGTCAGAATCACCACGTTATCAAGCCTTACTTCGTATGACCAGTGCTCCACG 851
Query 938 AAAGAGGTTTCCTGGTGATATCAAGAGCTTTTCTCATGAGCTGAACTCGAAAGGTGTTCG 997
|||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||| || ||
Sbjct 852 AAAGAGGTTTCCTGGTGACATCAAAAGCTTTTCTCATGAGTTGAACTCAAAAGGGGTACG 911
Query 998 GCCTTTTCCATTATGGAAGCCTCGTA-G--G-----T-T--A-AA--TAA-C-T-TG--- 1037
|| |||||||||||||||||||||| | | | | | || ||| | | ||
Sbjct 912 ACCCTTTCCATTATGGAAGCCTCGTAGGTCGAACAATGTGGAGAATCTAATCATCTGTCT 971
Query 1038 ----GAGGATATCTTGAATCTAATTCGAACCAAGTTTGATAAAGCAAAGGAAGAAGTAAA 1093
|||| || ||| ||| |||||| | || ||||||||||||||||||||||||||
Sbjct 972 TTTCCAGGAAATATTGGTTCTGATTCGAGCAAAATTTGATAAAGCAAAGGAAGAAGTAAA 1031
Query 1094 TTCGGACCTTTTTGCATTTGGTGGGGACCT-GTTGGATATT-TATGATAAAAACAAAGAA 1151
|| |||||| | ||||| | ||||| || ||| || | ||| ||||| ||||
Sbjct 1032 CTCTGACCTTGCAGTATTTGCAGCTGACCTGGTGGGA-GTTCT-TGAGAAAAATGCAGAA 1089
Query 1152 AGTCATCCTGAGTTGCTGGTTACAATTGAAGACTTGTTGGTTTTGGCAAAAACTTGTGCT 1211
|| |||||||||| | || ||| |||||||||| | ||||||| || |||||||
Sbjct 1090 AGCCATCCTGAGTGGGAGGAAACATTTGAAGACTTACTAATTTTGGCTCGAAGTTGTGCT 1149
Query 1212 AAGACTACTTCAAAAGAGTTCTGGCTTCAGTGTGAGGGCATAGTGCAAGACTTAGATGAT 1271
| ||||||| | ||| ||||||||||||||||| ||||| || || ||||||||||||
Sbjct 1150 ATGACTACTCCTGGAGATTTCTGGCTTCAGTGTGAAGGCATTGTTCAGGACTTAGATGAT 1209
Query 1272 AGACGTCAAGAGCTTCCTCCGGGCGTGCTCAAGCAGCTTCACACTCGGATGCTTTTTATC 1331
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1210 AGACGTCAAGAGCTTCCTCCGGGCGTCCTCAAGCAGCTTCATACTCGGATGCTTTTTATC 1269
Query 1332 CTTACCAGATGTACCAGATTACTTCAATTTCATAAGGAAAGTTGGGGGCAGGAGGAAGAT 1391
|||||||||||||| ||||||||||| |||||||||||||| |||||| |||||||| |
Sbjct 1270 CTTACCAGATGTACTAGATTACTTCAGTTTCATAAGGAAAGCTGGGGGGAGGAGGAACAA 1329
Query 1392 GCTGTACAACTACGTCAGTCAGGAGTCTTGCATTCTGCCGATAAAAGAGACC-CC-ACTG 1449
| ||||||||||||||||||| |||||||||||||| || ||| | ||| || |||
Sbjct 1330 GTTGTACAACTACGTCAGTCAAGAGTCTTGCATTCTATAGA-GAAA-ATACCTCCTACT- 1386
Query 1450 GAGAAGTTAGGGACGGGAAGG-GTTCAAGTACTGCCAATGCCTTAAAGGTACCATCCACC 1508
| | | | |||||||| |||| ||| |||| || | ||||||||||||||| |||
Sbjct 1387 --G--G--A--G-CGGGAAGGAGTTCCAGTGCTGCAAAGGTCTTAAAGGTACCATCTACC 1437
Query 1509 AAGAAAGCTTATAGTCAGGAGCAGCGTGGTTTGAATTGGATCG-AG-GGCTTTTTTGTTC 1566
|||||||||||||||||||||||| |||||||| | |||| | || || ||| | |
Sbjct 1438 AAGAAAGCTTATAGTCAGGAGCAGAGTGGTTTGGACTGGAAGGAAGACGC-GGTTT-TAC 1495
Query 1567 GTC-CAGCT-CCTCTCTCTTCTCCG--T-ACAATGAAACGTC-AAAGGATTCTGAATCGC 1620
| | ||| | || ||||| |||||| | | ||| | | || ||||| |||||||| |
Sbjct 1496 G-CTCAGTTCCCCCTCTC-TCTCCGACTGAAAATTATGC-TCTTAAGGAATCTGAATCTC 1552
Query 1621 CTGCAAACATCGATAAAATGTCTTCTTGGAAAAGACTTCCATCTCCAGCATC-GAAGGGT 1679
|||||||||| |||| ||||||||| ||||||| |||||||||||||||| | ||| |
Sbjct 1553 CTGCAAACATTGATAGAATGTCTTCCTGGAAAAAACTTCCATCTCCAGCA-CTGAAAACT 1611
Query 1680 GT-ACAAGAAGCTG-CAGTATCGA-AAGAGCAGAATGATCGCAAAGTTGAACCTCCACAG 1736
|| | ||||||| | ||| || | | ||||| |||||| |||||||||||||||| |
Sbjct 1612 GTGA-AAGAAGC-GCCAGCGTC-AGATGAGCATAATGATATCAAAGTTGAACCTCCAAAT 1668
Query 1737 GTCGTTAAAAAGCTAGTAGCTATAAGTGATGATATGGCTGTTGCTAAGTTGCCAGAAGTT 1796
| ||| || | | ||| | || |||||| |||||||||| | || | || |
Sbjct 1669 ATGGTTGGGAATCGACAAGC--T-AGCGATGATGCGGCTGTTGCT-A-TT--CTCAACTA 1721
Query 1797 TCTTCC-GCAAAAGCGTCCCAGGAACATATGTCCAAGAATCGGCATAATATTTCGTGGGG 1855
|| ||| ||||||| || || |||| | |||||| ||||||| |||||||| |||||
Sbjct 1722 TCCTCCAGCAAAAGATTCTCATGAAC--A-CTCCAAGCATCGGCACAATATTTCTTGGGG 1778
Query 1856 TTATTGGGG-GCATC-AGTCATGTATTTCTGAGGAAAGTTCAATTATTTGCCGTATATGC 1913
||| ||||| | | | | | | |||||| |||||||||||||| || |||||||| ||
Sbjct 1779 TTACTGGGGAG-AACAACCCCT-TATTTCAGAGGAAAGTTCAATAATGTGCCGTATCTGT 1836
Query 1914 GAGGAGGAAATTCCCACCACCCATGTGGAAGATCACTCTAGAATCTGTGCATTGGCTGAT 1973
||||||||| ||||||| || |||||||||||||||||||| | ||| |||||||||||
Sbjct 1837 GAGGAGGAAGTTCCCACAACACATGTGGAAGATCACTCTAGGGTTTGTACATTGGCTGAT 1896
Query 1974 AAATATGACCA-AAAGGGTGTGGGTGTTGACGAGCGGCTGATGGCAGTTGCAGTAACTCT 2032
||||||||||| ||| || || ||||||| |||||| ||||||||||||| | ||| ||
Sbjct 1897 AAATATGACCAGAAA-GGACTGAGTGTTGATGAGCGGTTGATGGCAGTTGCTGGAACACT 1955
Query 2033 TGAAAAGATAACAGACA-ATGTCATACAAAAGGATAGCCTAGCAGCGGTAGAAAGCCCAG 2091
||| |||||| |||| | | ||| ||| ||||||||||||||||| | |||||||||||
Sbjct 1956 TGACAAGATAGCAGAGACCT-TCAGACATAAGGATAGCCTAGCAGCCGCAGAAAGCCCAG 2014
Query 2092 AAGGTATGAAAATATCTAA--CGCGAGTTTGACCGAAGAACT-TGATGTTCTCTCCCCAA 2148
| ||||||||| |||| || | | | |||||| |||||| | |||||||||||| ||||
Sbjct 2015 ATGGTATGAAAGTATCCAATTCAC-A-TTTGACTGAAGAA-TCTGATGTTCTCTCTCCAA 2071
Query 2149 AGCTAAGTGATTGGTCGCGAAGAGGGTCGGAGGACATGCTTGACTGTTTTC-CGGAGACT 2207
| | ||||||||||||||||||||||| || |||||||||||||| |||| ||||| ||
Sbjct 2072 GGTTGAGTGATTGGTCGCGAAGAGGGTCAGAAGACATGCTTGACTG-TTTCACGGAGGCT 2130
Query 2208 GATAATTCAGTTTTCATGGATGATATGGGATGCTTACC-TTCAATGTCATGCAGAACTCG 2266
||||||||| |||| ||||||||| || || | ||||| || ||||||||| ||||| ||
Sbjct 2131 GATAATTCAATTTTTATGGATGATCTGAGAGGTTTACCATT-AATGTCATGTAGAACCCG 2189
Query 2267 TTTTGGTCCCAAGTCTGATCAAGGCATGGCTACTTCATCTGCCGGTAGCATGACTCCTAG 2326
|||||||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||
Sbjct 2190 TTTTGGTCCCAAGTCTGATCAAGGTATGACAACTTCATCTGCCAGTAGCATGACTCCTAG 2249
Query 2327 GTCCCCTATTCCAACCCCTAGACCCGATCCAATTGAATTGT-TATTAGAAGGCAAGGGTA 2385
||||| ||||| |||||||| || |||||||||||| | |||||| |||||| ||||
Sbjct 2250 ATCCCCGATTCCGACCCCTAGGCCTGATCCAATTGAA-CATATATTAGGAGGCAAAGGTA 2308
Query 2386 CATTCCATGACCAGGATGAT-TTCCCTCAGATGAGTGAACTTGCTGACATTGCAAGATGC 2444
||||||| || || |||||| || || |||||||||||||||||||||||||||| |||
Sbjct 2309 CATTCCACGATCAAGATGATATT-CCACAGATGAGTGAACTTGCTGACATTGCAAAATGT 2367
Query 2445 GCAGCAAATGCCATTCCTGTTGATGATCAATCTATTC-AGCTT-TTACTTTCCTGTCTTG 2502
|||||| |||||||||| | |||||||||||| |||| | || |||||||| |||||||
Sbjct 2368 GCAGCAGATGCCATTCCGGGTGATGATCAATCCATTCCA--TTCTTACTTTCTTGTCTTG 2425
Query 2503 AAGA-CTTGAGAGTTGTCATTGACCGCAGAAAGTTTGATGCACTTATAGTAGAAACTTTT 2561
|||| || ||| ||||| || ||||||||||||||||||||||||| |||||||||||||
Sbjct 2426 AAGATCT-GAGGGTTGTTATAGACCGCAGAAAGTTTGATGCACTTACAGTAGAAACTTTT 2484
Query 2562 GGAACACGCATAGAAAAGTTGATACAGGA-AAAGTATCTTCAGCTGTGCGAGCTTATGGA 2620
|| || ||||||||||| ||||| | ||| ||| ||||| || |||| |||||||||||
Sbjct 2485 GGGACTCGCATAGAAAAATTGATCCGGGAGAAA-TATCTGCATATGTGTGAGCTTATGGA 2543
Query 2621 TGATGAAAAAG--G-T--AC----CA-T--AATTGATGAAGATGCTCCTTTGGAAGATGA 2668
||||||||||| | | || || | |||||||||||||||||| | ||||||||
Sbjct 2544 TGATGAAAAAGTTGATCTACTAAGCACTGTAATTGATGAAGATGCTCCCCTAGAAGATGA 2603
Query 2669 TGTTGTTCGCAGCTTGAGGACCAGTCCAGTACATCTGCGGGACCGCATATCCATAGATGA 2728
||||||||| |||||||||||||| || ||||||| ||| ||||||| |||||| |||||
Sbjct 2604 TGTTGTTCGGAGCTTGAGGACCAGCCCGGTACATCCGCGAGACCGCACATCCATTGATGA 2663
Query 2729 TTTTGAGGTCATGAAGTCAATTAGTAGGGGAGCTTTTGGGC-ATGTTATTT-TGGCTC-G 2785
||||||| |||| || |||| || ||||||||||||||| | ||| ||| | || |
Sbjct 2664 TTTTGAGATCATAAAACCAATAAGCCGGGGAGCTTTTGGGCGA-GTT-TTTCTAGCGAAG 2721
Query 2786 TAAGAACACTACAGGAGACCTATTTGCAATTAAGGTTCTGAGGAAGGCAGATATGATCCG 2845
|||| || |||||||| ||||||||||| |||||||||| |||||||||||||| ||
Sbjct 2722 -AAGAGGACAACAGGAGATCTATTTGCAATCAAGGTTCTGAAAAAGGCAGATATGATTCG 2780
Query 2846 CAAGAATGCTGTGGAAAGTATACTTGCCGAACGAGATATTTTGATCAACGCCCGCAATCC 2905
||||||||||| |||||||||||||| ||||| ||||| |||||||||| ||||||||
Sbjct 2781 TAAGAATGCTGTTGAAAGTATACTTGCTGAACGTGATATATTGATCAACGTTCGCAATCC 2840
Query 2906 CTTTGTGGTTCGATTCTTCTATTCTTTTACTTGTAGCGAAAACCTGTATCTTGTGATGGA 2965
|||||||||||| |||||||||||||| || ||| | || ||||||||||| ||||||||
Sbjct 2841 CTTTGTGGTTCGTTTCTTCTATTCTTTCACGTGTCGTGACAACCTGTATCTGGTGATGGA 2900
Query 2966 ATACCTCAATGGAGGGGATTTTTATTCAATGTTGAGAAAAATAGGTTGCTTGGATGAAGC 3025
|| || ||||||||||| | ||||| |||||||||| |||||||||| || ||||
Sbjct 2901 GTATCTGAATGGAGGGGACCTGTATTCGTTGTTGAGAAATTTAGGTTGCTTAGAGGAAGA 2960
Query 3026 TAATGCCCGTGTATACATTGCAGAAGTTGTCCTTGCTTTGGAATATTTACACTCTGAGGG 3085
|| || ||||||||| ||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 2961 TATTGTCCGTGTATATATTGCTGAAGTTGTCCTTGCTTTGGAATATTTGCATTCTGAGGG 3020
Query 3086 TGTTGTGCATCGTGATTTGAAGCCTGACAATTTGTTGATTGCACATGATGGTCATGTTAA 3145
|||||| || |||||||||||||| || |||||||||||||| |||||||||||| | ||
Sbjct 3021 TGTTGTTCACCGTGATTTGAAGCCAGATAATTTGTTGATTGCGCATGATGGTCATATAAA 3080
Query 3146 GTTGACGGATTTTGGGCTTTCAAAAGTTGGTCTCATCAACAACACTGATGATCTCTCTGG 3205
||| || ||||| ||||| || ||||||||||||||||||| ||| |||||||| ||||
Sbjct 3081 GTTAACAGATTTCGGGCTCTCTAAAGTTGGTCTCATCAACAGCACGGATGATCTGGCTGG 3140
Query 3206 TCCAGTT-TCCAGTGCAACGTCGCTGCTTGTTGAGGAGAAACCAAAATT-GC--CAAC-- 3259
||| | | | |||| ||||| ||||||| ||||||| | || ||| || ||||
Sbjct 3141 TCCTGCTGTA-AGTGGGACGTCTCTGCTTGATGAGGAGGATTCACGATTAGCGGCAACTG 3199
Query 3260 A--------TTGGA---C-CAT-AAGCGGTCTGCGGTGGGCACTCCTGACTACTTAGCGC 3306
| ||| | | || || |||||||| ||||| |||||||| ||||||||||
Sbjct 3200 AGGAACAACTTGAAAGGCGCAAGAAACGGTCTGCTGTGGGTACTCCTGATTACTTAGCGC 3259
Query 3307 CAGAAATCCTTTTGGGGACAGGACATGGTGCAACTGCGGATTGGTGGTCTGTTGGCATCA 3366
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3260 CAGAAATTCTTTTAGGGACAGGACATGGTGCAACTGCGGATTGGTGGTCTGTTGGCATCA 3319
Query 3367 TTTTGTACGAATTCCTTGTGGGGATTCCGCCCTTCAATGCTGACCATCCTCAGCAAATCT 3426
|| ||| ||| || ||||||| ||||| ||||||||||| || |||||||||||||| |
Sbjct 3320 TTCTGTTTGAACTCATTGTGGGAATTCCACCCTTCAATGCGGAACATCCTCAGCAAATAT 3379
Query 3427 TTGACAATATTCTCAACCGTAATATACAATGGCCTCCTGTTCCTGAAGATATGAGC-CAT 3485
|||||||||||||||||||||| |||| |||||||| |||||| ||||| ||||| | |
Sbjct 3380 TTGACAATATTCTCAACCGTAAGATACCATGGCCTCATGTTCCAGAAGAAATGAGTGC-T 3438
Query 3486 GAAGCCCGTGAT-TTGATAGATCGGTTATTAACGGAAGATCCCCATCAGAGACTTGGAGC 3544
||||| | |||| || || || || || ||||| |||||||| |||||||||||||||||
Sbjct 3439 GAAGCTCATGATATT-ATTGACCGATTTTTAACAGAAGATCCACATCAGAGACTTGGAGC 3497
Query 3545 TAGAGGGGCGGCTGAGGTCAAGCAGCACAGCTTCTTTAAAGACAT-AGACTGGAACACTC 3603
||||||||| ||||||||||||||||||| ||||||||||||||| | ||||| |||| |
Sbjct 3498 TAGAGGGGCAGCTGAGGTCAAGCAGCACATCTTCTTTAAAGACATCA-ACTGGGACACAC 3556
Query 3604 TAGCACAA-CAGAAGGCTGCATTTGTGCCGGACT-CAGAAAATGCTTTTGACACAAGTTA 3661
||||| | || |||||||||||||| |||| || |||| | ||| |||||||||||||
Sbjct 3557 TAGCA-AGGCAAAAGGCTGCATTTGTTCCGG-CTTCAGAGAGTGCAATTGACACAAGTTA 3614
Query 3662 CTTCCAGA-GTCGCTACTCGTGGAACT-ATTCGGGTGAGCGATGTTTTCCA-ACCAATGA 3718
|||| ||| ||||||||||||||||| || | | ||||| || |||||| | | |||
Sbjct 3615 CTTC-AGAAGTCGCTACTCGTGGAACACAT-CAGATGAGCAAT-TTTTCCCGAGCGGTGA 3671
Query 3719 GAATGAAGATTCTAGTGAAGGTGACAGCTTGTGTGGCAGTAGTGGTCGCTTGAGCAATCA 3778
| | |||||| || ||| | || |||| | |||||| |||||| ||| |||||||||
Sbjct 3672 GGTTCAAGATTATATTGATGCTGGTAGCTCGACTGGCAGCAGTGGTTGCTCGAGCAATCA 3731
Query 3779 TCACGACGAGGGGG 3792
||| || || ||||
Sbjct 3732 TCATGAAGAAGGGG 3745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160260439903
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5