BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48510.1
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473989 jgi|Araly1|473989|fgenesh2_kg.1__3943__AT1G48510.1 1574 0.0
Ahg923188 jgi|Araly1|923188|scaffold_104469.1 560 9e-159
> Ahg473989 jgi|Araly1|473989|fgenesh2_kg.1__3943__AT1G48510.1
Length=1244
Score = 1574 bits (852), Expect = 0.0
Identities = 1053/1149 (92%), Gaps = 17/1149 (1%)
Strand=Plus/Plus
Query 1 ATGACAAAACTCGTTTCCAAGATATTTAA-GAGGTTGATTTCTCAAAGTCAGTACATGTC 59
||||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||
Sbjct 1 ATGACAAAACTCGTTTCTAAGA-CTTTAACGAGGTTGATCTCTCAAAGTCAGTACATGTC 59
Query 60 TTCTTCTACTACTAGCAATCTCCCTGCTGCTTCACAAACTTCCAATCTTGAGAGCCAATT 119
||||||||||||||||||||| || |||| | |||||||||||||||| ||||||
Sbjct 60 TTCTTCTACTACTAGCAATCT-CC--CTGC-T-----ACTTCCAATCTTGAGACCCAATT 110
Query 120 GCTTTCTTCAGCTCCACCACCCGCAAAGAAGAAAAGAGGGTCAGCGTTGTTATGGTACTT 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 GCTTTCTTCAGTTCCACCACCCGCAAAGAAGAAAAGAGGGTCAGCGTTGTTATGGTACTT 170
Query 180 AGTTGGATTCACTACTTATGGTCTCGGTGAGACGTATAAGTTCCTACAAACACAAGTGGA 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 171 AGTTGGATTCACTACTTATGGTCTCGGTGAGACGTATAAGTTCCTACAAACAGATTTGAA 230
Query 240 ACATCTTGATT-CTAGAAAACAATGCTTGGAAATGAAACCAATGAAGCTGAATACAACGA 298
||||||||||| | ||| |||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 231 ACATCTTGATTTC-AGACGACAATGCTTGGAAACGAAACCAATGAAGCTCAATACAATGA 289
Query 299 AAGATT-TGGATGGGTTAGGATTTCGACGGGTGGTATGCAAAGGCATTTTCGATGAGCAA 357
| || | |||||| ||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct 290 A-GAATGTGGATGAGTTAGGATTTCGACGGGTGATATGCAAAGGCGTTTTCGATGAACAA 348
Query 358 AGATCGATCTATGTGGGTCCAAAGCCTAGATCCATGTCTAAAAGTTCTGAAATTGGCTTT 417
|||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||
Sbjct 349 AGATCGATCTATGTGGGTCCAAAGCCTAGATCCATGTCCAAAGGTTCTGAAAATGGCTTC 408
Query 418 TATGTCATTACACCTCTTTTGCCAATCCCTAATGAACCTAATAGTATGAAGTCCCCTATT 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 409 TATGTCATTACACCTCTTTTGCCAATCCCTAATGAACCAAATAGTATGAAGTCCCCTATT 468
Query 478 CTAGTAAATCGCGGATGGGTTCCTTCGGATTGGAAAGAAAATTCTCTAGAATCTCTAGGT 537
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 469 CTAGTAAACCGCGGATGGGTTCCTTCAGATTGGAAAGAAAAGTCTCTAGAATCTCTAGGT 528
Query 538 ACTGGTGGTCTTGTTGCTGCTGCAAAAGAGTCAAGAAAAGCTAATAAACTTCTCTCCTCT 597
|| |||| | | |||||||||||||| ||| | |||||| |||||||| | |||||||||
Sbjct 529 ACCGGTGTTGTCGTTGCTGCTGCAAATGAGGCTAGAAAATCTAATAAAATACTCTCCTCT 588
Query 598 CAACAAAGTCTCTTGTCGAAGTTCTGGTACAAGTTGAACAACCCAATGATTGTTGAGGAC 657
||||||| |||||||||||||||||||| |||||| |||||||||| |||| ||||||
Sbjct 589 CAACAAAATCTCTTGTCGAAGTTCTGGTGCAAGTTTAACAACCCAACAATTGCTGAGGAT 648
Query 658 CAAGTCTCTAGGGCTATGCATGTGGAAGTGGTGGGTGTAGTTAGGAAAAGTGAAACTCCA 717
||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 649 CAAGTCTCTGGGGCTATGCATGTGGAAGTGGTTGGTGTAATTAGGAAAAGTGAAACTCCA 708
Query 718 GGCATATATACTCTAGTAAATTATCCAAGTTCGCTTGCGTGGTTCTACCTTGACGTTCCT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GGCATATATACTCTAGTAAATTATCCAAGTTCGCTTGCGTGGTTCTACCTTGACGTTCCT 768
Query 778 AAACTAGCTCTAGCCATGGGGTTTGGTGAGGACACAATGTATATAGAGAGTACGTACACA 837
||||| |||| ||| ||||| ||| |||||||||||||||||||||||| || |||| |
Sbjct 769 AAACTGGCTCAAGCAATGGGATTTAGTGAGGACACAATGTATATAGAGAATATTTACAAA 828
Query 838 GATATGGATGAAAGTAGAACTTATCCAGTTCCAAGAGACGTTGAGAACTTGACTCGTAGT 897
|||||||||||||||||| | ||||||| ||| ||||||||||||||||||| |||||||
Sbjct 829 GATATGGATGAAAGTAGACCATATCCAGCTCCGAGAGACGTTGAGAACTTGATTCGTAGT 888
Query 898 AAGGATATACCACTGGACTATCACTTGTACACAGTTTTGTGGCACTGGAGTTCCCTGACT 957
|||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||
Sbjct 889 AAGGATATACCACTGGACTATCACTTATACACAGTTTTATGGCATTGGAGCTCCCTGACT 948
Query 958 TGCTTTATTAAGGCGTCTTCGATTTTAATGCGAAGATTAACAAAATCTGATCCTATTGGT 1017
||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |||||
Sbjct 949 TGCTTTATTAAGGCGTCATCGATTTTAATGCGAAAATTTACAAAATCTGATCCTGTTGGT 1008
Query 1018 GTAGAGCCAATATTGATTCCAATTTCCATTCTCGTTTTTATATGTACCAAGATATACAGT 1077
| ||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 1009 ATTGAGCCAATATTGATTCCGATTTGTATTCTATTTTTTATATGTACCAAGATATACAGT 1068
Query 1078 CTTCGTAACTTATTTTGTAAAATAGACACTATTGGTGTTGGGTGTGTCACTAAACTCGA- 1136
||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 1069 CTTCGTAACTTATTTTGTAAAGTGGACACTATTGGTGTTGGGTGTCTCACTAAACTCGAG 1128
Query 1137 CACAGGAAA 1145
| |||||||
Sbjct 1129 C-CAGGAAA 1136
> Ahg923188 jgi|Araly1|923188|scaffold_104469.1
Length=824
Score = 560 bits (303), Expect = 9e-159
Identities = 396/437 (91%), Gaps = 21/437 (5%)
Strand=Plus/Plus
Query 34 TTGATTTCTCAAAGTCAGTACATGTCTTCTTCTACTACTAGCAATCTCCCTGCTGCTTCA 93
||||| ||||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct 1 TTGATCTCTCAAAGTCAGTACATGTCTTCTTCTACTACTAGCAATCT-CC--CTGC-T-- 54
Query 94 CAAACTTCCAATCTTGAGAGCCAATTGCTTTCTTCAGCTCCACCACCCGCAAAGAAGAAA 153
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 55 ---ACTTCCAATCTTGAGACCCAATTGCTTTCTTCAGTTCCACCACCCGCAAAGAAGAAA 111
Query 154 AGAGGGTCAGCGTTGTTATGGTACTTAGTTGGATTCACTACTTATGGTCTCGGTGAGACG 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 AGAGGGTCAGCGTTGTTATGGTACTTAGTTGGATTCACTACTTATGGTCTCGGTGAGACG 171
Query 214 TATAAGTTCCTACAAACACA--AGT----GGAACATCTTGA-TTCTAGAAAACAATGCTT 266
|||||||||||||||||| | || |||||||||||| ||| ||| |||||||||
Sbjct 172 TATAAGTTCCTACAAACAGATTTGTACAAGGAACATCTTGATTTC-AGACGACAATGCTT 230
Query 267 GGAAATGAAACCAATGAAGCTGAATACAACGAAAG-ATTTGGATGGGTTAGGATTTCGAC 325
||||| ||||||||||||||||||||||| | ||| || |||||| ||||||||||||||
Sbjct 231 GGAAACGAAACCAATGAAGCTGAATACAATG-AAGAATGTGGATGAGTTAGGATTTCGAC 289
Query 326 GGGTGGTATGCAAAGGCATTTTCGATGAGCAAAGATCGATCTATGTGGGTCCAAAGCCTA 385
||||||||| ||||||| ||| |||||||||||||||||||||||| |||||||||||||
Sbjct 290 GGGTGGTATACAAAGGCGTTTACGATGAGCAAAGATCGATCTATGTAGGTCCAAAGCCTA 349
Query 386 GATCCATGTCTAAAAGTTCTGAA-ATTGGCTTTTATGTCATTACACCTCTTTTGCCAATC 444
|||||||||| ||| |||||||| | |||||| ||||||| |||||||||||||||||||
Sbjct 350 GATCCATGTCCAAAGGTTCTGAAGA-TGGCTTCTATGTCAGTACACCTCTTTTGCCAATC 408
Query 445 CCTAATGAACCTAATAG 461
||||||||||| |||||
Sbjct 409 CCTAATGAACCAAATAG 425
Score = 309 bits (167), Expect = 4e-83
Identities = 250/288 (87%), Gaps = 14/288 (5%)
Strand=Plus/Plus
Query 923 TGTA-CACAG-TTTTGTGGCACTGGAGTTCCCTGACTTGCTTTATTAAGGCGTCTTCGA- 979
|||| || || |||| ||||||| ||| || |||||||||||||||||||| || ||||
Sbjct 547 TGTACCA-AGATTTTATGGCACTTGAGCTCTCTGACTTGCTTTATTAAGGCCTCATCGAT 605
Query 980 TTTTAATGCGAAGATTAACAAAATCTGATCCTATTGGTGTAGAGCCAATATTGATTCCAA 1039
|||| || |||| |||||||||||||| |||||||||| | |||||||||||||||||||
Sbjct 606 TTTTGATACGAA-ATTAACAAAATCTGTTCCTATTGGTATTGAGCCAATATTGATTCCAA 664
Query 1040 TTTCCATTCTCGTTTTTATATGTACCAAGATATACAGTCTTCGTAACTTATTTTGTAAAA 1099
||| |||||||||| ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 665 TTTGTATTCTCGTTTATATATGTACCAAGATATACAGTCTTCGAAATTTATTTTGTAAAA 724
Query 1100 TAGACACTATTGGTGTTGGGTGTGTCACTAAACTCGA-CACAGGAAAAGTCAAATGACAT 1158
||||||||||||||||||| ||| ||||||||||||| | |||||||| | |||
Sbjct 725 TAGACACTATTGGTGTTGGATGTCTCACTAAACTCGAGCT-AGGAAAAG--A-----CAT 776
Query 1159 GCCCAATGAAGTCCATAATGAAGGGTGAATAAGTTCGAAATCGCGGTT 1206
|||||||||||| ||||||||||| |||||||||| || |||| ||||
Sbjct 777 GCCCAATGAAGTTCATAATGAAGGATGAATAAGTTTGAGATCGTGGTT 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5