BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48540.1
Length=3466
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923189 jgi|Araly1|923189|scaffold_104470.1 4909 0.0
> Ahg923189 jgi|Araly1|923189|scaffold_104470.1
Length=3245
Score = 4909 bits (2658), Expect = 0.0
Identities = 3061/3255 (94%), Gaps = 30/3255 (1%)
Strand=Plus/Plus
Query 144 CTTGAATTTCCCCGATTTCAAATGGCAATTGTGACAGGAGATCGCTATGTTGAGAAGCTA 203
||| |||||| |||||||| |||||||||||| || |||||||| |||||||||||||||
Sbjct 2 CTTCAATTTCACCGATTTC-AATGGCAATTGTCACCGGAGATCGATATGTTGAGAAGCTA 60
Query 204 CAAAAGTTTTTAGAAGACGAAGCTGAGTCTCTTCTAGAAGAAACCATGATTCTCAAGCTT 263
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGAAGTTTTTAGAAGACGAAGCTGAGTCTCTTCTAGAAGAAACCATGATTCTCAAGCTT 120
Query 264 AATCCTGCTGGTCTTCACTATCTTCATCTCCGTCTTGACTCTCTCCGTGAACTCGAACGC 323
||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 121 AATCCAGCTGGTCTTCACTATCTTCATCTCCGTCTCGAGTCTCTCCGTGAACTTGAACGC 180
Query 324 ATGCTCTCCAATGCTCCTGTTGATTACCTTCGCGCCTACGTTTCCGACCTCGGCGATTAC 383
||||||||| |||||||||||||||||| ||||| |||||||| ||| | || ||||||
Sbjct 181 ATGCTCTCCGGTGCTCCTGTTGATTACCTCCGCGCTTACGTTTCTGACTTAGGAGATTAC 240
Query 384 CGCGCACTCGAACAGCTCCGTCGTATTCTCCGAATCCTCACTTCTCTTAAGGTCGTTTCC 443
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 241 CGCGCACTCGAGCAGCTCCGTCGTATTCTCCGAATCCTCACCTCACTTAAGGTCGTTTCC 300
Query 444 ACTCTTCCTTCTCCGGCTCGTGATCCCACGCCTCTCTCTCTTTTTCCCTTTGGTAGCCTT 503
|| |||||||| |||||||||||||| || || ||||||||| ||||||||||||| |||
Sbjct 301 ACGCTTCCTTCCCCGGCTCGTGATCCTACACCGCTCTCTCTTATTCCCTTTGGTAGGCTT 360
Query 504 AAGGTTTTGGAACTCCGTCGCTGTGATTTGTCTACTTCTCCGGCTAAAGGCTTGATCGAG 563
|||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | |||
Sbjct 361 AAGGTTTTGGAACTTCGTCGCTGTGATTTGTCCACTTCTCCGGCCAAAGGCTTGCTTGAG 420
Query 564 CTCCGTCACACTTTGGAAAAGATCATCTGCCATAATTCCACTGATGCTCTGAGGCATGTC 623
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 421 CTCCGTCACACTTTGGAAAATATCATCTGCCATAATTCCACTGATGCTCTGCGGCATGTG 480
Query 624 TTCGCTAGTAGGATTGCTGAGATAACGAATTCGCCCGAGTGGAATAAGTTGGCGGTCATA 683
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 481 TTCGCTAGTAGAATTGCTGAGATAACGAATTCGCCGGAATGGAATAAGTTGGCGGTCATA 540
Query 684 TCTTGTGCTTGTAACCGTCTTGTGCTCATGGATGAGTCCTTGCAGCTTCTTCCAGCTGCT 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTTGTGCTTGTAACCGTCTTGTGCTCATGGATGAGTCCTTGCAGCTTCTTCCAGCTGCT 600
Query 744 GAGTCTCTTGATCTCAGTCGAAACAAGTTTGTCAAAGTGGATAATCTTCGGAGATGCACC 803
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 GAGTCGCTTGATCTGAGTCGAAACAAGTTTGTGAAAGTGGATAATCTTCGGAGATGCACC 660
Query 804 AAATTGAAGCACCTTGATCTGGGATTCAATCATCTTAGAACGGTGTCTTACTTGAGCCAG 863
|||||||||||||||||||| || ||||||||||||||||| || ||||||||||| |||
Sbjct 661 AAATTGAAGCACCTTGATCTCGGTTTCAATCATCTTAGAACAGTCTCTTACTTGAGTCAG 720
Query 864 GTATCCTGTCATCTTGTAAAACTTGTTTTGAGGAACAACGCTCTTACTACGTTGCGTGGG 923
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 GTATCCTGTCATCTTGTGAAACTTGTTTTGAGGAACAACGCTCTAACTACGTTGCGTGGG 780
Query 924 ATTGAGAACTTGAAGTCACTCCAAGGCCTTGATGTTTCCTACAATATTATTTCCAACTTT 983
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 781 ATTGAGAACTTGAAGTCACTTGAAGGCCTTGATGTTTCCTACAACATTATTTCCAACTTT 840
Query 984 TCAGAATTGGAGTTCCTTTGGAGTCTTTCACAACTGAAAGAATTGTGGCTGGAAGGAAAC 1043
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 TCAGAATTGGAGTTCCTTTGGAGTCTTTCAGTACTGAAAGAATTGTGGCTGGAAGGAAAC 900
Query 1044 CCAGTGTGTTGTGCTCGATGGTACAGGGCACATGTCTTCAGCTACGTTGCTCTCCCAGAT 1103
|||||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct 901 CCAGTGTGCTGTGCTCGATGGTACAGGGCGCATGTCTTCAGCTACATTGCTCTTCCAGAT 960
Query 1104 GAACTGAAGCTAGATGGCAAACAGATAGGAACTAGAGAATTTTGGAAGAGGCAAATCATT 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAACTGAAGCTAGATGGCAAACAGATAGGAACTAGAGAATTTTGGAAGAGGCAAATCATT 1020
Query 1164 GTAGCCCATAGGCAAAGTGAACCTGCAAGTTACGGATTCTATTCTCCAGCTAGAGAGGAA 1223
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 1021 GTAGCCCATAGGCAAAGTGAGCCTGCAAGCTACGGATTCTACTCTCCAGCTAGAGAGGAA 1080
Query 1224 GATAATGAAGAAGGAAGCTGCAATAGaaaaaagaaaaaGATCTGCCGTCTCGCTTCAATC 1283
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCTAATGAAGAAGGAAGCTGGAATAGAAAAAAGAAAAAGATCTGCCGTCTCGCTTCAATT 1140
Query 1284 CATAGCGAAGCAGAGAGCACCTATGTGAATTCTGACCATGAGTCAGCTACATGTGATCAC 1343
|||||||||||||||| |||||||||||||||||| ||||||||||| | |||||||||
Sbjct 1141 GATAGCGAAGCAGAGAGGACCTATGTGAATTCTGACTATGAGTCAGCTTCCTGTGATCAC 1200
Query 1344 GAGAACAAAGAGAATATGAAGTTTAATCAAGAAGCCGATATATTTGGTCTTATAAGTAAA 1403
||||||||||||||| |||||| | |||||||||| ||||||||||||||||||||||||
Sbjct 1201 GAGAACAAAGAGAATCTGAAGTGTGATCAAGAAGCTGATATATTTGGTCTTATAAGTAAA 1260
Query 1404 GTTGAACACCTGAAGAAAGAACGTTCTGTTTTGTGGTTGCGAGAGTTCAAGGAGTGGATG 1463
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1261 GTTGAACACCTGAAGAAAGAACGTTCTGTTCTGTGGTTGCGAGAGTTCAAGGAGTGGATG 1320
Query 1464 GATCGCTCAACAGAGGATTTTGCAGATGTCTGTAAAGACAGCCAGGGTATAAATTTGGAG 1523
|||| |||||||||||||||||||||||| |||||||| |||||||||| ||||||||
Sbjct 1321 GATCATTCAACAGAGGATTTTGCAGATGTCAGTAAAGACGGCCAGGGTATCAATTTGGA- 1379
Query 1524 AAA-AAGTACTATACAAAGATAAGAGAAATCTCAAGGCACCATGGTGGAGGAACACCGAG 1582
||| ||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||
Sbjct 1380 AAAGAAGTACTATACAAAGATTAGAGAAATCTCGAGGCATCATGGT---GGAACACCGAG 1436
Query 1583 ATATACTTCCGGGTCTTTACGTGCTTCAAGAGCTAAGAGCTATAGGAAAAATTTGGAATG 1642
|||| |||| ||||||||||||||||||||||||||| |||||||||||| ||| |||||
Sbjct 1437 ATATGCTTCAGGGTCTTTACGTGCTTCAAGAGCTAAGGGCTATAGGAAAAGTTTAGAATG 1496
Query 1643 CAATGGCTCATGTGTGGATCATAAAGCTGGTATGGATTATATGA-AGTACGTTGAAGGTA 1701
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1497 CAATGGCTCATGTGTGGATCATAAAGCTGGTATGGATTATAT-AGAGTACGTTGAAGGTA 1555
Query 1702 ATGAGACACAAAAGATAACCGATGACATCTCTTCAATAAGCCTTCAAAGTACAGATCGAA 1761
||||| |||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||
Sbjct 1556 ATGAGTCACAAAAGATAACCGATGGCATCTCGTCATTAAGCCTTCAAAGTACAGATCTAA 1615
Query 1762 ATCAGAAGCATCAGGAATGTGTACACGATGAGATGGAATCTTTGTCAGTTGAACCAAACG 1821
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1616 ATCAGAAGCATCAGGAATGTTTACACCATGAGATGGAATCTTTGTCAGTTGAACCAAACA 1675
Query 1822 ACCTGTTACCTACAACACTTGCCAAGGAGAAGCTAGCTGAAAATGGAAACATGTCAACAT 1881
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1676 ACCTGTTACCCACAACACTTGCCAGGGAGAAGCTAGCTGAAAATGGAAACATGTCAACAT 1735
Query 1882 TGGATATAACCCAGCATATGACAGGATCAACATATCCTGGGTCACCCCCTCATTATCAGA 1941
||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1736 TGGATGTAACCCAGCATATGACAGGAT---CGTATCCTGGGTCACCCCCTCATTATCAGA 1792
Query 1942 AAGATGTCTTATATCGACGTCATAATTTGGTGGAAGAAATCTTGCAGTTGTCTGCAGATT 2001
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1793 AAGATGTCTTATATCGGCGTCATAACTTGGTGGAAGAAATCTTGCAGTTGTCTGCAGATT 1852
Query 2002 CTTATTCAGTGGCGTCATCTGATAGCACAAGCAGCTGCAGTGAAGATGATAATTATGATT 2061
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1853 CTTATTCAGTGGCATCATCTGATAGCACAAGCAGCTGCAGTGAAGATGATAACTATGACT 1912
Query 2062 CTGAATCTGAGTATTCAAATCATAAAGAGGGGCGGTTGACTGATCTTCTTAATGTGAATA 2121
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1913 CTGAATCTGAGTATTCAAATCATAAAGAGGGGCAGTTGACAGATCTTCTTAATGTGAATA 1972
Query 2122 GACTTGGGAAGGAGATCCTGGAATGTACACCGAAAGGAACAAGATTTCTTGGTTCT-CAA 2180
||||||||||||||| || |||||| ||| ||||||||||| ||||||| || | |||
Sbjct 1973 AACTTGGGAAGGAGATTCTTGAATGTGGACCAAAAGGAACAAGCTTTCTTGATT-TACAA 2031
Query 2181 CCGGAGAATGGTAGCACAATAAAAACTTTGAGAACAGATGAATCAATGAAGGAAACTACC 2240
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2032 CGGGAGAATGGTAGCACAATAAAAACTTTGAGAACAGATGAATCAAGGAAGGAAAATACC 2091
Query 2241 ACTAACTTTCCTTCTGGATTGCATAATGGTAAACATGGTGTTAACCAGACAGACCGTTTG 2300
||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 2092 GCTAACTTTCTTTCTGGATTGCATAATGGTGAACATGTTGTTAACCAGACAGACCGTTTG 2151
Query 2301 GTTGAGAAAAGGAAACCTATAAAAAGATTTGTTTCCTTCCAGAAAGAGGAAAGTTGCATT 2360
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2152 GTTGTGAAAAGGAAACCTATAAAACGATTTGTTTCCTTCCAGAAAGAGGAAAGTTGCATT 2211
Query 2361 ACCAATGGAGAGATATCTCTCAGGAGTGATGCAGATATCAGTGATTCTGGTGAAGATGTG 2420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2212 ACCAATGGAGAGATATCTCTCAGGAGTGATGCAGATATCAGTGATTCTGGTGAAGATGAA 2271
Query 2421 TGTATTTCTGATAATTTTTGGGAGAATACCCTGTCAAGGGTTTGTAGTAGTAGTAGTAAT 2480
||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||
Sbjct 2272 TGTATTTCTGATAATTTTTGGGATAATTCCCTGTCAACGGTTTGTAGTAGTAGTAGTAAT 2331
Query 2481 AGGAGTATCAAATTTTTGGGGACTGATAGAACACTTG--GA-----G---T--AG-AG-G 2526
||||||||||||||||||||||||||||||||||||| || | | || || |
Sbjct 2332 AGGAGTATCAAATTTTTGGGGACTGATAGAACACTTGAAGAAAAAAGCGATTTAGTAGAG 2391
Query 2527 -AATATTTTTCAGCAAAACTGTCAGTTTCCAGCTCTCAAGAAACTTGTAGGACGTACATG 2585
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2392 GAATATTTTTCAGCAAAACTGTCAGACTCCAGTTCTCAAGAAACTTGTAGGACGTACATG 2451
Query 2586 AATTGTGATCTTATACTACAGAAAGGTTCCACATACAAGCAACGGGAAGCAGTGTTGCTG 2645
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2452 AATTGTGATCTTATAGTACAGAAAGGTTCCACATACAAGCAAAGGGAAGCAGTGTTGCTG 2511
Query 2646 CTGAGTAGCCAGGACAAGTTGTACGTGCTACTCGTGGGTGTGACTACTGATTATGAAGGG 2705
||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 2512 CTGAGTAGCCAATACAAGCTGTACGTGCTACTCGTGGGTGTGGCTACTGATTATGAAGGG 2571
Query 2706 AGTACCTTAAGTGTACTGTGTTCCCATGAAATCAAGGATTTACAAGACGTATCAGTTGGT 2765
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2572 AGTACCTTAAGTGTACTATGTTCCCATGAAATCAAGGATTTACAAGATGTATCAGTTGGT 2631
Query 2766 CTAGGACTTCAATTTGTGAGGCTACGCTTTTTGGAGGATGTAGAATACATTTTTGTAACC 2825
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2632 CTAGGACTTCAGTTTGTGAGGCTACGCTTTTTGGAGGATGTAGAATACATTTTCGTAACC 2691
Query 2826 AAGTGTATTAA-AAAGACAACAGAATTACTCAATATCACACAAGTTTTCGATTCCCAGGC 2884
|| |||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2692 AAATGTATTGAGAAA-ACAACAGAATTACTCAATATCACACAAGTTTTCGATTCCCAGGC 2750
Query 2885 TACAGAGTATAAATGTTCTTTGCAAAGTCTGGAGAATATTCAGGTGGACTTGTTTGAGAA 2944
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2751 TACAGAGTATAAATGTTATTTGCAAAGTCTGGAGAATATTCAGGTGGACTTGTTTGAGAA 2810
Query 2945 AGAAATATGTGGAGGTTTGAAGCTAAGTATATTCCAGTACAATGTTCTCCATTTTCAGAG 3004
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2811 AGAAATATGTGGAGGTTTGAAGCTGAGTATATTCCAGTACAATGTTCTCCATTTTCAGAG 2870
Query 3005 CACCACTCGTGGAGAAGTGTCATGGCTTTTGCGGTCGCTATTTGTGGCTGGTAGGCGTCT 3064
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2871 CACCACTCGTGGAGAAGTGTCATGGCTTTGGCGGTCGCTATTTGTGGCTGGTAGGCGTCT 2930
Query 3065 CTTTATATGCAGTGAGGACTTCACACAACTAAGTTCTCGAACAGCATACTCTTCTTCAGC 3124
||| ||||||| ||||||||||| |||| ||||||||||||||||||| |||||||||||
Sbjct 2931 CTTCATATGCAATGAGGACTTCAAACAATTAAGTTCTCGAACAGCATATTCTTCTTCAGC 2990
Query 3125 TCCATATTTCTTGCTCGACTCGTGCTGCTCCATTTCTGAAATATCTGAAATGATCATTGA 3184
||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2991 TCCATATTTCTTGCTTGACTCGTGCTGCTCCATTTCTGATATATCTGAGATGATCATTGA 3050
Query 3185 AACGCAAGGAATTGTTGTGTCATTAAAGATCAAAGAGAAGAGAACAGTGGATTTAGTTAC 3244
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3051 ATCGCAAGGAAGTGTTGTGTCATTAAAGATCAAAGAGAAGAGAACAGTGGATTTAGTTAC 3110
Query 3245 ATGGAAGCTCAAGTGGTGCAGCATAGAGAATGCTATCAAGTTTGCGGCCTTGCTCAAAGC 3304
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 3111 ATGGAAGCTCAAGTGGTGCAGCATAGAGAATGCTCTCAAGTTTGCGGCTTTGCTCAAAGC 3170
Query 3305 TCTTCATCCCAATTCGCCACAATGGCCGTTGGCTGTAAGATACAGGAGATAAGTCTTCGT 3364
|||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 3171 TCTTCACCCCAATTCGCCACAATGGCCATTGGCTGTAAGACACAGGAGATAAGTCTTCGT 3230
Query 3365 TTACCttttcttttg 3379
|| |||||| |||||
Sbjct 3231 TTGCCTTTTTTTTTG 3245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130879993547
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5