BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48550.1
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473992 jgi|Araly1|473992|fgenesh2_kg.1__3946__AT1G48550.1 1855 0.0
> Ahg473992 jgi|Araly1|473992|fgenesh2_kg.1__3946__AT1G48550.1
Length=1205
Score = 1855 bits (1004), Expect = 0.0
Identities = 1143/1210 (94%), Gaps = 9/1210 (1%)
Strand=Plus/Plus
Query 13 CCACAAAATCCGCTGTAGCTAAGCTCGGTGAGTAAAATGGCGACGGCGACGACGGTGAAT 72
|||||||| ||||||||||| || ||||||| | ||||||||||| |||||||||||||
Sbjct 1 CCACAAAAGCCGCTGTAGCTTAGTTCGGTGA-TTCAATGGCGACGGTGACGACGGTGAAT 59
Query 73 GTCAAACTTTCTCGATCAAATCGTATCTATCGCTCTTCCGAACCAGTGGAAGGAAAAATT 132
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 60 GTCAAACTTTCTCGATCTAACCGTATCTATCGCTCCTCCGAACCAGTGGAAGGAAAAATT 119
Query 133 GTGATAAAATCTGCAACTTCGATTTCGCATCAAGCAATACGTTTATCCGTCAATGGATCA 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTGATAAAATCTGCAACTTCGATTTCGCATCAAGCAATACGTTTATCCGTCAATGGATCA 179
Query 193 GTCAACTTGCAGGTTCGTGGAGGATCAGCTGGAGTTATTGAGTCCTTCTATGGTGTCATC 252
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 GTCAACTTGCAGGTTCGTGGAGGATCAGCTGGAGTTATTGAGTCTTTCTATGGTGTCATC 239
Query 253 AAGCCTATTCAAATCGTCAAGAAGACGATCGAAGTTAAGTCTTCTGGCAAAATCCCTCCG 312
|||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct 240 AAGCCTATTCAAATCGTCAAAAAGACGGTCGAAGTTAAATCTTCTGGCAAAATCCCTCCA 299
Query 313 GGAACTACAGAGATACCATTCTCTTTGAATCTGAGGGAGCCTGGGGAAGGCATTGTAGAG 372
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 300 GGAACTACAGAGATACCATTCTCGTTGAATCTGAGGGAGCCTGGGGAAAGCATTGTAGAA 359
Query 373 AAGTTCTATGAGACATTTCATGGAACAAATATCAACATCCAATATCTACTAACTGCAGAT 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGTTCTATGAGACATTTCATGGAACAAATATCAACATCCAATATCTACTAACTGCAGAT 419
Query 433 ATACCGCGAGGATACTTGCACAAACCTTTGTCTGCAACAATGGAGTTTATTATTGAGAGC 492
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 ATACCGCGAGGATACTTGCACAAACCTTTATCTGCAACAATGGAGTTTATTATTGAGAGC 479
Query 493 GGTAGAGTTGACCTTCCCGAGCGGCCTATTCCTCCGGAAATTG-TCATCTTCTACATCAC 551
||||||||||| ||||| |||||||| |||||||| || ||| ||||||||||||||||
Sbjct 480 GGTAGAGTTGATCTTCCTGAGCGGCCAATTCCTCCAGAC-TTGGTCATCTTCTACATCAC 538
Query 552 TCAAGACACACAGAGACATCCGTTGCTGCCTGATATTAAGACAGGTGGTTTCCGAGTTAC 611
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 539 TCAAGACACACAGAGACATCCGTTGCTACCCGAGATTAAGACAGGTGGTTTCCGAGTTAC 598
Query 612 TGGAAAATTAGCCACCCAATGCTCTTTGCAGGATCCACTCAGTGGTGAGTTAACAGTGGA 671
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 599 TGGAAAATTAGCCACTCAGTGCTCTTTGCAGGATCCACTCAGTGGCGAGTTAACAGTGGA 658
Query 672 AGCATCTTCAGTTCCTATTACTTCTATTGACATTCACCTACTCCGAGTTGAGTCGATAAT 731
||||||||| ||||||||||||||||| ||||||||||||||||| || ||||| |||||
Sbjct 659 AGCATCTTCGGTTCCTATTACTTCTATCGACATTCACCTACTCCGTGTCGAGTCAATAAT 718
Query 732 TGTAGGGGAAAGGATTGTCACTGAGACCTCTTTGATTCAGTCTACACAGATTGCGGATGG 791
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGTGGGGGAAAGGATTGTCACTGAGACCTCTTTGATTCAGTCTACACAGATTGCGGATGG 778
Query 792 AGATGTGTGCCGTAACATGACTCTACCCATTTACGTTTTACTACCTCGGCTTTTAATGTG 851
|||||| ||||| ||| ||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 779 AGATGTATGCCGAAACTTGACTCTACCCATTTACGTTTTACTTCCTCGGCTTCTGATGTG 838
Query 852 TCCTTCCGTTTTCGCAGGTCCCTTCTCAGTGGAATTCAAGGTATGCATCACCATAAGTTT 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCCTTCCGTTTTCGCAGGTCCCTTCTCAGTGGAATTCAAGGTATGCATCACCATAAGTTT 898
Query 912 CAAATCGAAGCTAGCCAAAGCACAACCCAAGTCTGATCCAACAGCTCCAAGACTATGGAT 971
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 899 CAAATCGAAGCTAGCGAAAGCACAACCGAAGTCTGATCCAACAGCTCCAAGACTATGGAT 958
Query 972 GGCGCTGGAGAGATTACCGCTGGAACTTGTCCGGACAAAGCGAGATCAGTTCAGCTGCTA 1031
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGCACTGGAGAGATTACCGCTGGAACTTGTCCGGACAAAGCGAGATCAGTTCAGCTGCTA 1018
Query 1032 AAGAACAAGCTAACATAT-ATGGTCAACACATGTTTCTCATACGCATACACTTGGCTTTG 1090
|||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||| |||
Sbjct 1019 AAGAACAAGCTAACATATGA-GGTCAACACGTGTTTCTCATATGCATACACTTGGCCTTG 1077
Query 1091 TAGTCGTATGCTTCCTAGCTTGCTCTGTCTGGCTAATATAAGCGGTTTAAAA-CGTGTCT 1149
||||||||||||||||||||| |||| ||| ||| | || | |||| |||| |||||||
Sbjct 1078 GAGTCGTATGCTTCCTAGCTTGATCTGCCTGCCTACT-TAGGAGGTT-AAAATCGTGTCT 1135
Query 1150 GCGTGTACAAATCCCGATTTTATTACCCTGCCC-AATGTTTGTTACTATGCAGACTCCAA 1208
||| |||||||| |||||||| ||||||||||| |||||||||||||||| |||||||||
Sbjct 1136 GCGAGTACAAATTCCGATTTTGTTACCCTGCCCCAATGTTTGTTACTATGTAGACTCCAA 1195
Query 1209 GATGTTCCTA 1218
||||||||||
Sbjct 1196 GATGTTCCTA 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46509958740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5