BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48550.1 Length=1245 Score E Sequences producing significant alignments: (Bits) Value Ahg473992 jgi|Araly1|473992|fgenesh2_kg.1__3946__AT1G48550.1 1855 0.0 > Ahg473992 jgi|Araly1|473992|fgenesh2_kg.1__3946__AT1G48550.1 Length=1205 Score = 1855 bits (1004), Expect = 0.0 Identities = 1143/1210 (94%), Gaps = 9/1210 (1%) Strand=Plus/Plus Query 13 CCACAAAATCCGCTGTAGCTAAGCTCGGTGAGTAAAATGGCGACGGCGACGACGGTGAAT 72 |||||||| ||||||||||| || ||||||| | ||||||||||| ||||||||||||| Sbjct 1 CCACAAAAGCCGCTGTAGCTTAGTTCGGTGA-TTCAATGGCGACGGTGACGACGGTGAAT 59 Query 73 GTCAAACTTTCTCGATCAAATCGTATCTATCGCTCTTCCGAACCAGTGGAAGGAAAAATT 132 ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| Sbjct 60 GTCAAACTTTCTCGATCTAACCGTATCTATCGCTCCTCCGAACCAGTGGAAGGAAAAATT 119 Query 133 GTGATAAAATCTGCAACTTCGATTTCGCATCAAGCAATACGTTTATCCGTCAATGGATCA 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GTGATAAAATCTGCAACTTCGATTTCGCATCAAGCAATACGTTTATCCGTCAATGGATCA 179 Query 193 GTCAACTTGCAGGTTCGTGGAGGATCAGCTGGAGTTATTGAGTCCTTCTATGGTGTCATC 252 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 180 GTCAACTTGCAGGTTCGTGGAGGATCAGCTGGAGTTATTGAGTCTTTCTATGGTGTCATC 239 Query 253 AAGCCTATTCAAATCGTCAAGAAGACGATCGAAGTTAAGTCTTCTGGCAAAATCCCTCCG 312 |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| Sbjct 240 AAGCCTATTCAAATCGTCAAAAAGACGGTCGAAGTTAAATCTTCTGGCAAAATCCCTCCA 299 Query 313 GGAACTACAGAGATACCATTCTCTTTGAATCTGAGGGAGCCTGGGGAAGGCATTGTAGAG 372 ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 300 GGAACTACAGAGATACCATTCTCGTTGAATCTGAGGGAGCCTGGGGAAAGCATTGTAGAA 359 Query 373 AAGTTCTATGAGACATTTCATGGAACAAATATCAACATCCAATATCTACTAACTGCAGAT 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AAGTTCTATGAGACATTTCATGGAACAAATATCAACATCCAATATCTACTAACTGCAGAT 419 Query 433 ATACCGCGAGGATACTTGCACAAACCTTTGTCTGCAACAATGGAGTTTATTATTGAGAGC 492 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 420 ATACCGCGAGGATACTTGCACAAACCTTTATCTGCAACAATGGAGTTTATTATTGAGAGC 479 Query 493 GGTAGAGTTGACCTTCCCGAGCGGCCTATTCCTCCGGAAATTG-TCATCTTCTACATCAC 551 ||||||||||| ||||| |||||||| |||||||| || ||| |||||||||||||||| Sbjct 480 GGTAGAGTTGATCTTCCTGAGCGGCCAATTCCTCCAGAC-TTGGTCATCTTCTACATCAC 538 Query 552 TCAAGACACACAGAGACATCCGTTGCTGCCTGATATTAAGACAGGTGGTTTCCGAGTTAC 611 ||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| Sbjct 539 TCAAGACACACAGAGACATCCGTTGCTACCCGAGATTAAGACAGGTGGTTTCCGAGTTAC 598 Query 612 TGGAAAATTAGCCACCCAATGCTCTTTGCAGGATCCACTCAGTGGTGAGTTAACAGTGGA 671 ||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| Sbjct 599 TGGAAAATTAGCCACTCAGTGCTCTTTGCAGGATCCACTCAGTGGCGAGTTAACAGTGGA 658 Query 672 AGCATCTTCAGTTCCTATTACTTCTATTGACATTCACCTACTCCGAGTTGAGTCGATAAT 731 ||||||||| ||||||||||||||||| ||||||||||||||||| || ||||| ||||| Sbjct 659 AGCATCTTCGGTTCCTATTACTTCTATCGACATTCACCTACTCCGTGTCGAGTCAATAAT 718 Query 732 TGTAGGGGAAAGGATTGTCACTGAGACCTCTTTGATTCAGTCTACACAGATTGCGGATGG 791 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TGTGGGGGAAAGGATTGTCACTGAGACCTCTTTGATTCAGTCTACACAGATTGCGGATGG 778 Query 792 AGATGTGTGCCGTAACATGACTCTACCCATTTACGTTTTACTACCTCGGCTTTTAATGTG 851 |||||| ||||| ||| ||||||||||||||||||||||||| ||||||||| | ||||| Sbjct 779 AGATGTATGCCGAAACTTGACTCTACCCATTTACGTTTTACTTCCTCGGCTTCTGATGTG 838 Query 852 TCCTTCCGTTTTCGCAGGTCCCTTCTCAGTGGAATTCAAGGTATGCATCACCATAAGTTT 911 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TCCTTCCGTTTTCGCAGGTCCCTTCTCAGTGGAATTCAAGGTATGCATCACCATAAGTTT 898 Query 912 CAAATCGAAGCTAGCCAAAGCACAACCCAAGTCTGATCCAACAGCTCCAAGACTATGGAT 971 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 899 CAAATCGAAGCTAGCGAAAGCACAACCGAAGTCTGATCCAACAGCTCCAAGACTATGGAT 958 Query 972 GGCGCTGGAGAGATTACCGCTGGAACTTGTCCGGACAAAGCGAGATCAGTTCAGCTGCTA 1031 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 GGCACTGGAGAGATTACCGCTGGAACTTGTCCGGACAAAGCGAGATCAGTTCAGCTGCTA 1018 Query 1032 AAGAACAAGCTAACATAT-ATGGTCAACACATGTTTCTCATACGCATACACTTGGCTTTG 1090 |||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||| ||| Sbjct 1019 AAGAACAAGCTAACATATGA-GGTCAACACGTGTTTCTCATATGCATACACTTGGCCTTG 1077 Query 1091 TAGTCGTATGCTTCCTAGCTTGCTCTGTCTGGCTAATATAAGCGGTTTAAAA-CGTGTCT 1149 ||||||||||||||||||||| |||| ||| ||| | || | |||| |||| ||||||| Sbjct 1078 GAGTCGTATGCTTCCTAGCTTGATCTGCCTGCCTACT-TAGGAGGTT-AAAATCGTGTCT 1135 Query 1150 GCGTGTACAAATCCCGATTTTATTACCCTGCCC-AATGTTTGTTACTATGCAGACTCCAA 1208 ||| |||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||| Sbjct 1136 GCGAGTACAAATTCCGATTTTGTTACCCTGCCCCAATGTTTGTTACTATGTAGACTCCAA 1195 Query 1209 GATGTTCCTA 1218 |||||||||| Sbjct 1196 GATGTTCCTA 1205 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46509958740 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5