BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48560.2
Length=2230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473993 jgi|Araly1|473993|fgenesh2_kg.1__3947__AT1G48560.1 2242 0.0
> Ahg473993 jgi|Araly1|473993|fgenesh2_kg.1__3947__AT1G48560.1
Length=2228
Score = 2242 bits (1214), Expect = 0.0
Identities = 1498/1629 (92%), Gaps = 44/1629 (3%)
Strand=Plus/Plus
Query 628 AAGTGCAGAGCTAAAT-GATCGATCTGAAGAATCAGGTTGGTGTCTTGAATACTCAAAGA 686
|||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 565 AAGTGCAGAGCT-AATGGATCGCTCTGAAGAATCAGAATGGTGTCTTGAATACTCAAAGA 623
Query 687 AGATGGACCTGTG-TTCTATGTTTCCTGAGACTGCGGATGCGGA-TATCGACAACAGTAG 744
||||||||||| | |||||||||||||||||| | |||||| || | || ||||||||
Sbjct 624 AGATGGACCTG-GCTTCTATGTTTCCTGAGACAGTGGATGCAGACGAGGGA-AACAGTAG 681
Query 745 AGATTTGAGTCTAAGAGATCCATTGCCGAAGGATCTCCCTTGTTG----T-T-CTTC--- 795
||||||||||||||| ||||||||||| |||||| | |||||||| | | ||||
Sbjct 682 AGATTTGAGTCTAAGTGATCCATTGCCAAAGGATATACCTTGTTGTTCTTCTCCTTCTTT 741
Query 796 TGAGCAGCATGTTGATAAAGTAGTTCAGATTTGCACATGGAATACGAGGAGCCCTCGAAC 855
|| ||||| ||||||||||||||||||||||||||||||||| | | | ||||| |||
Sbjct 742 TGTGCAGCGTGTTGATAAAGTAGTTCAGATTTGCACATGGAA-A--A--A-CCCTCTAAC 795
Query 856 CAGTTCTAATTCTAGTACCATGAAAGCTTGTGAAACCATGGTTAGAAGAGCTGTTCATGA 915
|| |||| |||||| ||||| ||||||||||||||||||||| ||| ||||| | |
Sbjct 796 CACCTCTAGTTCTAGCACCATAAAAGCTTGTGAAACCATGGTTCGAACAGCTG-T--T-- 850
Query 916 GGATGATGGTCACCTGTCCAAGAGTAAAGAATGCTGTCAAGTTGAGCAGAATATCTGCTT 975
||||||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||
Sbjct 851 -GATGATGGTCACCGGTCTAAGAGTAAAGAAAGCTGTCAAGTTGAGCAGAGTATCTGCTT 909
Query 976 ATTGAATTCAGAACCTTCTATTGAAGATATGATAGAGGAAGACACCACTTCCGTTGCTGC 1035
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 ACTGAATTCAGAACCTCCTATTGAAGATATGATAGAGGAAGACACCACTTCCGTTGCTGC 969
Query 1036 CTCAAGAGTTGATGTATCAGAAGCACTTCCTGATGTTATGATTGAAACTCATGATGACAT 1095
| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 970 CACAAGAGTTGATGTATCAGAAGCACTTCCAGATGTTATGATTGAAACGCATGATGACAT 1029
Query 1096 CATTGGTTTGGTTGATGGACCTGTGACATCGACAAATGAACTGTCACCCTTGCTTGAT-T 1154
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 1030 CATTGGTTTGGTTGATGGGCCTGTGACATCGACAAAACAACTGTCACCCTTGCTTGATGT 1089
Query 1155 CGAGCAACGACAAAGCTTATTTGGCAAAGCCTGTTTCTTTTGTTGTTCCAGGAGCCTGTC 1214
||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1090 -GAGTAACGACAAAGCATATTTGGCAAAGCCTGTTTCTTTTGTTGTTCCGGGAGCCTGTC 1148
Query 1215 ACACTCTAGCTTGTT-CAGTGAGaaaaaaaTATGCTAGCCCAAGAAACAAGCTTGATAGC 1273
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 ACACTCTAGCTTGTTCCA-TGAGAAAAAAATATGCTAGCCCAAGAAACAAGCTTGATAGC 1207
Query 1274 TCTATCATCAGTGCCAAGACCTTGAATGAGCAGTCGTTAGGTAGGAATAGTCTTAATGGA 1333
|||||||||||||||| ||||||||| ||||| |||||| |||||||||||||||||||
Sbjct 1208 CCTATCATCAGTGCCAATACCTTGAATCAGCAGCCGTTAGATAGGAATAGTCTTAATGGA 1267
Query 1334 ACACGAGAAAACTGCTCTGAATATACGTTGGAGTCACATATTGTGGAGGTGGGACAGGTT 1393
|||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 1268 ACACGAGAAAACTGCTCTGAGGATGCGTTGGAGTCACATATTGTGGAGGTTGGACAGGTT 1327
Query 1394 TCGCTACCTAGTACAGGCACTTCAAACAAAGAATTTAGTTCTGATGATGCAGG---AGCA 1450
||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct 1328 TCGCTACATAGTACAGGCACTTCAAACAAAGAATTCAGTTCTGATGATGTAGGCATAGCA 1387
Query 1451 CCTGCAGAACAATTACAAGATTTGGAAGCTGGAACAACTGTTGAAAACCAGACGAGATCA 1510
||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1388 CCTGCAGCACAAGTACAAGATTTGGAACCTGGAACAACTGTTGAAAACCAGACGAGATCA 1447
Query 1511 GTTGATAATGTCAGATCCATTGGTGTCAAAAGGAAGGCAAGTCGAGACAAAGCATCTGCA 1570
|||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||||
Sbjct 1448 GTTGATAATGTCAGATCCATTGGTCTCAAAAGGAAAGCAAGTCGAGACAAATCATTTGCA 1507
Query 1571 CGTTACTCCAAGAGAAAGAAGAAAGCAGGCCAACAATCTATTTCTACTGATAAATCGCTG 1630
|| |||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 1508 CGAAACTCCAAGAGAACGAAGAAAGCAGCCCAACAATCTATTGCTACTGATAAACCGCTG 1567
Query 1631 AATCTACACCTGATGAAAGATATGCGGCTTGCTAATCCAAAATGTTTGCGGATGAAGTTT 1690
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1568 AATCTACACCTGATGAAAGATATGCGGCTTGCTAATCCAAAATGTTTGCGAATGAAGTTT 1627
Query 1691 TTGTGTAGACATGGGGATCTCCCGTCCAAAGCAGAACTGTTGAAGAGATTCAGTGTGTTT 1750
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1628 TTGAGTAGACATGGGGATCTCCCATCCAAAGCAGAACTGTTGAAGAGATTCAGTGTGTTT 1687
Query 1751 GGGAAAATAGATGCTTCAAGAACTGATGTAAACCCAGGGGAAAGCTCTGCGAAAGTAGTA 1810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 GGGAAAATAGATGCTTCAAGAACTGATGTAAACCCAGGGGAAAGCTCTGCGAAAGTAGTA 1747
Query 1811 TTCATGCAGAGCATCGATGCAGTGACGGCTTATCAATTTGCTAGGAGCAAAAAGTTTAGA 1870
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1748 TTCGTGCAGAGCATCGATGCAGTGACGGCTTATCAATTTGCTAGGAGCAAAAAGTTTAGA 1807
Query 1871 CTAGGAAAGTCTAAGGTTACGTACCGCCTCGAACCCTTTGAGGAAGACAATGAAGTaaaa 1930
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1808 CTAGGACGGTCTAAGGTTACGTACCGCCTCGACCCCTTTGAGGAAGACAATGAAGTAAAC 1867
Query 1931 aaaGTTCCTTTGCCTCAGAAGCCGCAAAAGTCTGCTCCATCACCAAAATCATGTCTCAAG 1990
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1868 AAAGTTCCTTTGCCTCAGAAGCCTCAAAAGTCTGTTCCATCACCAAAATCATGTCTCAAG 1927
Query 1991 GAACATGGTTTGGTAGATAAAGAAGAGGGAAGAAGGAATATGAAGGTGAAATTTCAAATG 2050
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1928 GAACAAGGTTCGGTAGATAAAGAAGAGGGAAGAAGGAATATGAAGGTGAAATTTCAAATG 1987
Query 2051 GAGACCAACTCATGAATCCGATGACATCATCATCTCAATAGTTT-T--A--GCTTATGTA 2105
||||| |||||||||||||||| ||||||||||||||||||||| | | ||||||||
Sbjct 1988 GAGACTAACTCATGAATCCGATAACATCATCATCTCAATAGTTTGTGCATAGCTTATGTC 2047
Query 2106 GCTCTCACGGGAAGCTTTTGTAATGTAGCTACGGTCTGTTCCTAACGAAGAACTTGCACC 2165
||||||||||||| |||| ||| | |||| | |||||||||||||||||||||||||||
Sbjct 2048 GCTCTCACGGGAATCTTTCGTAGTATAGCGATTGTCTGTTCCTAACGAAGAACTTGCACC 2107
Query 2166 tttttttGG-CCTTGAAGCTTTTGTATAATCATGGCTTGTTTTGTATTAGAGAT---GAC 2221
||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 2108 TTTTTTTGGTCCT-GAAGCTTTTGTATAATCATGGCTTGTTTTGTCTTAGAGATTTTGGC 2166
Query 2222 ATAGTTTGT 2230
|||||||||
Sbjct 2167 ATAGTTTGT 2175
Score = 682 bits (369), Expect = 0.0
Identities = 505/567 (89%), Gaps = 24/567 (4%)
Strand=Plus/Plus
Query 7 ACACTTTCTTCTCTCTTGTCTTGTCACAGAGATGATATCAGAGAGAAAGCTTAAACCCTA 66
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 1 ACACTTTCTTCTCTCTTGTCTTGTCAAAGAGATGATATGAGAGATAAAGCTTAAACCCTA 60
Query 67 A-TAT--TC--A-AAG---ATGTGGAAGAAAGGGGAGCTAGTTTGGGTAAGCGTGAGCTT 117
| | | || | ||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 61 ATTTTCATCAGAGAAGAAAATGTGGAAGAAAGGGGAGCTAGTTTGGGTAAGCTTTAGCTT 120
Query 118 TTCGAATACATGGATTCCGGGTCGGATTATCGATCCATCCGAATCGTTAGGAGTTCTCGT 177
|||| ||||||||||||||||||||||| | ||||||||||||||||||| | |||||
Sbjct 121 TTCGGATACATGGATTCCGGGTCGGATTCTTGATCCATCCGAATCGTTAG---T-CTCGT 176
Query 178 CTCGTTCTTCGGCCTAATGGATCCGCGATACGTTCCAAAACCATT-TCTACGAAGCTTTG 236
|| ||| ||| ||||||| ||||| |||||||||||||| || |||||||||||| |
Sbjct 177 -TC-TTC---GGCTTAATGGAGCCGCGTTACGTTCCAAAACC-TTGTCTACGAAGCTTCG 230
Query 237 ATCGCGATTTCA-AAACCTTGATTTCAGATTCAAGGTGGATTCGCCGCTTTGTGAATCGA 295
||||||||||| |||| ||||||||||||||| || |||||||||| ||||||||||||
Sbjct 231 ATCGCGATTTCGGAAAC-TTGATTTCAGATTCACGGAGGATTCGCCGGTTTGTGAATCGA 289
Query 296 GCTCTGCGAGCTTACTTTTGGAACATCTCGTTTGGGTTATGGTGTTCTTGCCAGCCGCGT 355
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 290 GCTCTGCGAGCTCACTTTTGGAATATCTCGTTTGGGTTATGGTGTTCTTGCCAGCCACTT 349
Query 356 ATTGATTCGCCTTACTTGGATAGAGAAAACTCTCTCCCACGGTTTCATGCCA-CTTCGGA 414
|||||||| |||||||| ||||||||||||||||||||| |||||| | | | |||||||
Sbjct 350 ATTGATTCTCCTTACTTCGATAGAGAAAACTCTCTCCCATGGTTTCCT-CTAACTTCGGA 408
Query 415 TTCGGCTCTGGGGTTTGTTAGAGATATGGCTATTTCGATACGAATGCCCCTCTGGAGATT 474
|||||||||||| |||||| |||||||||| ||||| |||||| |||| |||||||||||
Sbjct 409 TTCGGCTCTGGGTTTTGTTCGAGATATGGCCATTTCTATACGAGTGCCTCTCTGGAGATT 468
Query 475 AGCTGAGACCAATAGTTCCAGTGCTCAGATCCTTAGTTTTCGGCGTTACATTGTCGATTT 534
|||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 469 AGCTGAGACCAACAGTTCGAGTGCTCAAATCCTTAGTTTTCGGCGTTACATTGTTGATTT 528
Query 535 TAAGCGCTCCGAATCTGTCTATGAGGA 561
|||||| ||| ||||||||||||||||
Sbjct 529 TAAGCGTTCCAAATCTGTCTATGAGGA 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83950899980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5