BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48570.1
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336977 jgi|Araly1|336977|fgenesh1_pg.C_scaffold_1003542 1273 0.0
> Ahg336977 jgi|Araly1|336977|fgenesh1_pg.C_scaffold_1003542
Length=1332
Score = 1273 bits (689), Expect = 0.0
Identities = 799/851 (94%), Gaps = 11/851 (1%)
Strand=Plus/Plus
Query 59 ATGTCATCTTCCAGAATATTCCTAGTCGGTAATTCCATATTCCGACCTCACAAACCATCC 118
||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||||| |||
Sbjct 1 ATGTCATCTTCCAGAATATTCCTAGTCGGAAATACCATTTTCCGTCCTCACAAACCTTCC 60
Query 119 TTTCCTCTCTCTTTCAATCGTTTTCCATCTGTATCTCTCCGCTTCCGATGCTTCTCCAGT 178
|||||||||||||||||||| || || |||||||||||||||||| ||||||||||||||
Sbjct 61 TTTCCTCTCTCTTTCAATCGCTTCCCCTCTGTATCTCTCCGCTTCAGATGCTTCTCCAGT 120
Query 179 GACGCCGCCGCCGCAGT---AGCAACCACCGTGGATTCGGATTCGCCGTCTCTCACTCCT 235
||||||||| ||||||| | ||||||||||||||||||||| ||||||||| |||||
Sbjct 121 GACGCCGCCACCGCAGTAACAACAACCACCGTGGATTCGGATTTGCCGTCTCTTTCTCCT 180
Query 236 CATCCATGGCCAGAGTGGATAACTTTCGTCGATCGCTTAAAGACGAAAGGATATTTCACC 295
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CATCCATGGCCAGAGTGGATAACTTTCGTCGATCGTTTAAAGACGAAAGGATATTTCACC 240
Query 296 AAAGACACCGAAGATGATACTGTTTATCAGGAAATGATTCTCGTTAAAGATGCTTGTCTC 355
|||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||
Sbjct 241 AAAGACACCGAAGATGATACGGTTTATCAGGAAATGAATCTAGTTAAAGATGCTTGTCTC 300
Query 356 AGCTTCGCTCGTGATCGTTACGACGTTCTCAGATCCTTATCATCAGGAGATGTACAAGCT 415
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 AGCTTCGCTCGTGATCGTTACGACGTTCTCAGGTCCTTATCATCAGGAGATGTACAAGCT 360
Query 416 CTTGTGGAGCGTGGATGCCCTAATCTCTTCAGAAAAACTGTGAATTCTTCCAAAAGGATT 475
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 CTTGTGGAGCGTGGATGCCCTAATCTCTTCAGAAAAACTGTGAATTCATCCAAAAGGATT 420
Query 476 CGAGCTCATGTTAAG-TTAAACGAAGGAGATGTTTGTGGTTCTTGTGATCTTCGTAGCTC 534
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGAGCTCATGTT-CGATTAAACGAAGGAGATGTTTGTGGTTCTTGTGATCTTCGTAGCTC 479
Query 535 GTGTGATAGAGCTTATGTGATACTTAAGGATACAGAAGCTGATGCTCGAACTGTTGATGT 594
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 GTGTGATAGAGCTTATGTGATACTTAAGGATACAGAAGCTGATGCTCGAACCGTTGATGT 539
Query 595 TATGCGTTTACTATTGTTCAATGCGCTTGATTCTATAGTTATCTCTCGAGGTGAAGTTCC 654
||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 540 TATGCGTTTACTATTGTTCAATGCGCTTGATTCGATTGTTATCTCTCGAGGTGAAATTCC 599
Query 655 ACCTGGTAAAGAACTTGTTCATGAGTCTGCAAGAAGACTTCTTTTAGAGTTGGTTGAGTT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACCTGGTAAAGAACTTGTTCATGAGTCTGCAAGAAGACTTCTTTTAGAGTTGGTTGAGTT 659
Query 715 TAGTGAGAAGCCTTTAATCCCTGCTTTACCAAAACCTTCTTCAAAGGAATCTTCTTTGCC 774
|||||||||||||||| |||||| ||||||||||||||||| |||||||||| | |||
Sbjct 660 CAGTGAGAAGCCTTTAAGCCCTGCCTTACCAAAACCTTCTTCTAAGGAATCTT-T--GCC 716
Query 775 TTCGAAAGAGAGAGCTTTTAAGTCGAGGAATGATGA-G--CCTTCTCAGCGTGTGGCTTT 831
| | || ||||| | |||||| | |||||||||||| | ||||||||||||||||||||
Sbjct 717 TCCCAAGGAGAGGGTTTTTAAATTGAGGAATGATGATGAGCCTTCTCAGCGTGTGGCTTT 776
Query 832 TAAATCGAGGAATGATGATCCTTCTCAACGTGTGGCTTTTAAATCGAGGAATGATGAGCC 891
|||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 777 TAAATCGAGGAATGATGAGCCTTCTCAACGTGTGGCTTTTAGATCGAGGAACGATGAACC 836
Query 892 TTCTCACCGTG 902
|||||| ||||
Sbjct 837 TTCTCAACGTG 847
Score = 1007 bits (545), Expect = 0.0
Identities = 583/601 (97%), Gaps = 3/601 (0%)
Strand=Plus/Plus
Query 829 TTTTAAATCGAGGAATGATGAT---CCTTCTCAACGTGTGGCTTTTAAATCGAGGAATGA 885
|||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 732 TTTTAAATTGAGGAATGATGATGAGCCTTCTCAGCGTGTGGCTTTTAAATCGAGGAATGA 791
Query 886 TGAGCCTTCTCACCGTGTGGCTTTTAAATCGCGGAACGATGAGTCTTCTCAACGTGATCG 945
|||||||||||| ||||||||||||| |||| |||||||||| ||||||||||||||||
Sbjct 792 TGAGCCTTCTCAACGTGTGGCTTTTAGATCGAGGAACGATGAACCTTCTCAACGTGATCG 851
Query 946 ACCTCTTTACAGTGCAGATTGGGCTTGTCCTAAATGCGACTTTGTAAACTTTGCCAGAAA 1005
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 852 ACCTCTTTACAGTGCAGATTGGGCTTGTCCCAAATGCGACTTTGTAAATTTTGCCAGAAA 911
Query 1006 TGAAAGATGCCGAGAGTGCAATGAAGTCGCTGACAGACGACCTGTTGCTGCTGTTGTCAA 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TGAAAGATGCCGAGAGTGCAATGAAGTCGCTGACAGACGACCTGTTGCTGCTGTTGTCAA 971
Query 1066 GGAAGGTGACTGGCTATGTCCTGAGTGTAGTTTCTTAAACTTCACAAGAAACCAGAGCTG 1125
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 972 GGAAGGTGACTGGCTATGTCCTGAGTGCAGTTTCTTAAACTTTACAAGAAACCAGAGCTG 1031
Query 1126 TCTGAAATGCAAAGCAAAGGGACCAAAGAAAACTTCAATGGTGAATATTGTTGAAATGAA 1185
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1032 TCTGAAATGCAAAGCAAAGGGACCAAAGAAAACTTCAATGGTGAATGTTGTTGAAATGAA 1091
Query 1186 GAAAGGAGACTGGAACTGCACTGGGTGTGGATATATGAACTTTGCTAGCAACAAACAGTG 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 GAAAGGAGACTGGAACTGCACTGGGTGTGGATATATGAACTTTGCTAGCAACAAACAGTG 1151
Query 1246 TCGAGAGTGCCGAGAACAACGTCACAAGACGCTAGCTGAGCCTGGAGATTGGGAATGCCC 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 TCGAGAGTGCCGAGAACAACGTCACAAGACGCTAGCTGAGCCTGGAGATTGGGAATGCCC 1211
Query 1306 CTCATGCGACTTCGTGAACTTTAGGAGAAACGATGCTTGCAAGAAATGCGAGTGCAAACG 1365
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 CTCATGCGACTTTGTGAACTTTAGGAGAAACGATGCTTGCAAGAAATGCGAGTGCAAACG 1271
Query 1366 ACCTAGCCAAGCCAATAACGATCAAGAAGACCATACATGGAAACGACCCGCCTTAGTGTA 1425
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1272 ACCTAGCGAAGCCAATAACGATCAGGAAGACCATACATGGAAACGACCCGCCTTAGTGTA 1331
Query 1426 A 1426
|
Sbjct 1332 A 1332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60068316365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5