BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48580.1
Length=1505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923193 jgi|Araly1|923193|scaffold_104474.1 1112 0.0
> Ahg923193 jgi|Araly1|923193|scaffold_104474.1
Length=1429
Score = 1112 bits (602), Expect = 0.0
Identities = 700/748 (94%), Gaps = 4/748 (1%)
Strand=Plus/Plus
Query 1 ATGAACTCCCAAGCTGAAGTAGACCAATGGGAAGCTCTTGATCTCGGCGATTCTGAACTC 60
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGAATTCCCAAGCAGAAGTAGAGCAATGGGAAGCTCTTGATCTCGGCGATTCTGAACTC 80
Query 61 CCGTCTTTTCTCCGCCCTTGTAAACGCAAATCTCCGACGAGGTCTCTGCAACCGCATGCG 120
|||||||||||||||||||| || || ||||||||| |||||||||||||||||| ||||
Sbjct 81 CCGTCTTTTCTCCGCCCTTGCAATCGAAAATCTCCGTCGAGGTCTCTGCAACCGCCTGCG 140
Query 121 CAACAACAGAATCCAAAGGCGGGTTTTAATAGTAACACTAATCACCGTCCCACTCTTCGG 180
|||||||||||||||||||||||||||||||||||| | ||||||| || |||||| ||
Sbjct 141 CAACAACAGAATCCAAAGGCGGGTTTTAATAGTAACGCAAATCACCTTCAGACTCTTAGG 200
Query 181 CGCTGCTCCTCGCCGGATAAGTTTCTTGAGGAGAGTTATTCTCGCTCCTTGATTCCAGGA 240
|||||||||||| ||||| | |||||||| || |||||||| |||||||| |||||||||
Sbjct 201 CGCTGCTCCTCGTCGGATCATTTTCTTGAAGACAGTTATTCCCGCTCCTTAATTCCAGGA 260
Query 241 CCTGCTGGAGTTGTTCAAGTTGCAATCCGTAGAAAGATGAATAAGGATCCTAAA-TCGTT 299
|||||||||||| |||||||||||||||| || ||||||||||||||||| ||| |||||
Sbjct 261 CCTGCTGGAGTTTTTCAAGTTGCAATCCGCAGGAAGATGAATAAGGATCC-AAACTCGTT 319
Query 300 TAATGAGCATGGAGAACCAATTCCAACTCAAGAGTTCTTACGTAAGGCAGCAGAAGAGCC 359
|||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||
Sbjct 320 CAATGAGCATGGAGAACCAATTCCAACTCAAGAGTTCCTACGGAAGGCTGTGGAAGAGCC 379
Query 360 TGATTGGGAAGACAAGGATTTCTCTGAGGACCCCTGGGTCTCTACTGTTGATTACATTC- 418
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||
Sbjct 380 TGATTGGGAAGACAAGGATTTCTCCGAGGACCCCTGGGTCTCTGCTGTTGATTACA-TCA 438
Query 419 GAAGTGAAGGTTTGTTGAGCAATGGTGGAAATGCTATAGGGACACCAGTGAGCGAGATTA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 GAAGTGAAGGTTTGTTGAGCAATGGTGGAAATGCTATAGGGACACCAGTGAGCGAGATTA 498
Query 479 AGAGAAGATGTGACAGTTGGGGTAAAGTTGATCAGGTCGTGGCAATTGTCAAAACTTGCA 538
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 499 AGAGCAGATGTGACAGTTGGGGTAGAGTTGATCAGGTCGTGGCAATTGTCAAAACTTGCA 558
Query 539 CTCCGAATGGTCTAGGTGATGTCATGGTGACTCTTAAGGATCCCACTGGAACAATTGATG 598
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 559 CTCCAAATGGTCTAGGTGATGTCATGGTGACCCTTAAGGATCCCACTGGAACAATTGATG 618
Query 599 CCAGTGTGCACAGAAAAGTTATCTCCGAGAGTGAGTTTGGTAGAGATATACGAGTTGGCG 658
|||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
Sbjct 619 CCAGCGTGCACAGAAAAGTTATCTCCGAGAGTGAGTTTGGAAGAGATATACTAGTTGGTG 678
Query 659 CAGTGGTGATACTTAAGCAGGTTGCAGTCTGCGCACCCTCACGTTCATCAACCTATCTTA 718
|||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||
Sbjct 679 CAGTGGTGATACTTAAGCAGGTAGCAGTCTGCGCACCTTCACGGTCGTCAACCTATCTTA 738
Query 719 ACATAACACTGAAGAACATCTCCAAGGT 746
||||||||||||||||||||||||||||
Sbjct 739 ACATAACACTGAAGAACATCTCCAAGGT 766
Score = 728 bits (394), Expect = 0.0
Identities = 512/568 (90%), Gaps = 11/568 (2%)
Strand=Plus/Plus
Query 825 TTTACCAAAGCAGAACGATTCTGAAATGAGTGGCAAGAATCTTGTTCCGGTGAATGAAAA 884
|||||| |||| ||| |||||||||| ||||| |||||||| ||||| |||||||||||
Sbjct 869 TTTACCTAAGCCGAATGATTCTGAAACGAGTGCCAAGAATCCCGTTCCTGTGAATGAAAA 928
Query 885 CGAGGAATATTTGCGACTGCAACCCAATGTGTTTAGTGTTGAGCAAAGCACTACTCAAGG 944
||||||||||||||||||||||||||| | |||| ||| |||||| | ||||| |||||
Sbjct 929 CGAGGAATATTTGCGACTGCAACCCAAAGCCTTTACTGTGGAGCAAGGAACTACACAAGG 988
Query 945 CATCATGAACAATCTCAGACAAAATGCT-AAAGGAAGCAGTGAAGCACTGC-ATGACATA 1002
||||||||||||||||||||||||| | |||||||||||||||||||| | |||| ||
Sbjct 989 AATCATGAACAATCTCAGACAAAATG-TGAAAGGAAGCAGTGAAGCACT-CAATGATGTA 1046
Query 1003 GAAATGGTAGATATTAATCCTGCAGAGGGAAGCAA-ATCCTCTCCTAAAAAGGGTGTGAC 1061
|||||| |||| ||||||| |||||||||||||| | || ||| ||||||||||||||
Sbjct 1047 GAAATGATAGACCTTAATCCAGCAGAGGGAAGCAACGT-CTGTCCAAAAAAGGGTGTGAC 1105
Query 1062 AAAGAATCACTGTGAAGTTAGAATGGAGCAGACTCTCTTGGGAAAACATGATTCAATCAG 1121
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 AAAGAATCAGTGTGAAGTTAGAATGGAGCAGACTCTCTTGGGAAAACATGATTCAATCAG 1165
Query 1122 CCAAACAGAGCAGCAACTGTACGAAGATGTAGCTACTGAGACTGATATAGCTGATTGCAT 1181
|||| |||||||||||||||| |||||||||||| |||||||||||| ||||||| ||||
Sbjct 1166 CCAACCAGAGCAGCAACTGTATGAAGATGTAGCTTCTGAGACTGATACAGCTGATGGCAT 1225
Query 1182 TAGACCCGCGAAACAGATCAGAAGAAGTTC-TCAATCGCAGATTGATGAGCAAGAGAGTG 1240
||||||||||||||||||||||||||| || | || | || |||||||||||||||| |
Sbjct 1226 TAGACCCGCGAAACAGATCAGAAGAAG-TCGTGAACCACACATTGATGAGCAAGAGAATA 1284
Query 1241 TAATGGGGAACCCTGATGAAGTCACAACTCGAACTACAATCCACAAATCTCAATCGATGG 1300
|||||||||| | |||||||| ||||||| |||||| |||||||||||||||||||||
Sbjct 1285 TAATGGGGAA--C-GATGAAGTTACAACTCAAACTACGGTCCACAAATCTCAATCGATGG 1341
Query 1301 CGTCAACAATCTCGTTGCCACAATGGACGGACGAGCAACTTGAAGAACTCTTTGCTTTTG 1360
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1342 CGTCAACAATCGCGTTGCCACAGTGGACGGACGAGCAACTTGAAGAACTCTTTGCTTTTG 1401
Query 1361 ACTGAAATAGACAGTTTGGCTTTCTTTT 1388
||||||||||||||||||| ||||||||
Sbjct 1402 ACTGAAATAGACAGTTTGGATTTCTTTT 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56335472355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5