BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48590.2
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923194 jgi|Araly1|923194|scaffold_104475.1 821 0.0
Ahg479285 jgi|Araly1|479285|fgenesh2_kg.3__1986__AT3G17980.1 366 1e-100
> Ahg923194 jgi|Araly1|923194|scaffold_104475.1
Length=554
Score = 821 bits (444), Expect = 0.0
Identities = 518/554 (94%), Gaps = 4/554 (1%)
Strand=Plus/Plus
Query 120 GAGAAGCATAAAGATCGGAGGATGAAACCTTCTTTAATGGATAGTCTACTAGGTCTCCTC 179
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 GAGAAGCATAAAGATCGGAGGATGAAACCCTCTTTAATGGATAGTCTACTAGGTCTCCTC 60
Query 180 CGTATTCGCATCAAACGCGGCGTCAACCTCGCAGTCCGTGATCTCAACAGTAGTGATCCT 239
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 61 CGTATTCGCATCAAACGCGGCGTCAATCTCGCAGTCCGCGATCTCAACAGTAGTGATCCT 120
Query 240 TACGTTGTCGTCAAAATGGCAAAACAGAAATTGAAGACTCGAGTTATTTACAAAAATGTA 299
||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 121 TACGTCGTCGTCAAAATGGGAAAACAGAAAATGAAGACTCGAGTTATTTACAAAGATGTA 180
Query 300 AATCCTGAGTGGAATGAAGACTTGACTCTCTCAGTTTCAGACCCCAATCTTACCGTCCTC 359
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 181 AATCCTGAGTGGAATGAAGATTTAACTCTCTCAGTTTCAGATCCCAATCTTACCGTCCTC 240
Query 360 TTGACGGTGTATGATTATGACACGTTCACCAAAGACGACAAGATGGGAGATGCAGAATTC 419
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 TTGACGGTGTATGACTACGACACGTTCACCAAAGATGACAAGATGGGAGATGCAGAATTC 300
Query 420 GGGATTAAGCCGTTCGTTAATGCGTTGAAGATGCACTTACATGATCTCCCATCTGGGACC 479
| ||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 301 GTGATAAAGCCGTTTGTTAATGCATTGAAGATGCACTTACATGATCTCCCTTCTGGGACC 360
Query 480 ATCGTAACCACGGTCCAGCCTAGCCGCGACAACTGCCTAGCCGAGGAGTCTCGGGTTATA 539
|| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 361 ATTGTGACCACGGTCCAGCCTAGCCGAGACAATTGCCTAGCCGAGGAGTCTCGGGTTATT 420
Query 540 TGGTCTGATGGTAAGCTCGTTCAAGATATAGTTCTTAGGCTGAGACATGTCGAATGTGGT 599
|||||||| ||||||||||||||||||||||||||||| || ||||||||||| || |||
Sbjct 421 TGGTCTGACGGTAAGCTCGTTCAAGATATAGTTCTTAGACTAAGACATGTCGAGTGCGGT 480
Query 600 GAGGTTGAGGCTCAACTTCAATGGATTGATCTTCCCGGA---AAGGGTCTATGATTTGTT 656
|||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 481 GAGGTTGAAGCTCAACTTCAATGGATTGATCTTCCCGGATCTAAGGGTCTATAATTTGTT 540
Query 657 TT-CTGTGTATTGG 669
|| || ||| ||||
Sbjct 541 TTTCTCTGTTTTGG 554
> Ahg479285 jgi|Araly1|479285|fgenesh2_kg.3__1986__AT3G17980.1
Length=973
Score = 366 bits (198), Expect = 1e-100
Identities = 396/489 (81%), Gaps = 24/489 (5%)
Strand=Plus/Plus
Query 186 CGCATCAAACGCGGCGTCAACCTCGCAGTCCGTGATC-TCAACAGTAGTGATCCTTACGT 244
||||||||||| |||||||| | || |||||||| | ||| || || |||||||||||
Sbjct 220 CGCATCAAACGTGGCGTCAATTTAGCCGTCCGTGA-CATCAGTAGCAGCGATCCTTACGT 278
Query 245 TGTCGTCAAAAT-GGCAAAACAGAAATTGAAGACTCGAGTTATTTACAAAAATGTAAATC 303
||||||||||| ||| |||||||||||||||||||| || ||| ||||| |||||||||
Sbjct 279 CGTCGTCAAAATGGGC-AAACAGAAATTGAAGACTCGTGTCATTAACAAAGATGTAAATC 337
Query 304 CTGAGTGGAATGAAGACTTGACTCTCTCAGTTTCAGACCCCAATCTTACCGTCCTCTTGA 363
| || ||||||||||| ||||||||||| || ||||| |||||||||||||||||||||
Sbjct 338 CAGAATGGAATGAAGATTTGACTCTCTCCGTCACAGACTCCAATCTTACCGTCCTCTTGA 397
Query 364 CGGTGTATGATTATGACACGTTCACCAAAGACGACAAGATGGGAGATGCAGAATTCGGGA 423
||||||| ||| | |||| ||| | ||||||||| |||||||| ||||| || |||| ||
Sbjct 398 CGGTGTACGATCACGACATGTTTAGCAAAGACGATAAGATGGGTGATGCTGAGTTCGAGA 457
Query 424 TTAAGCCGT-TCGTTAATGCGTTGAAGATGCA-CTTACATG-ATCTCCC-ATCTGGGACC 479
| ||||||| | || | || |||| |||||| ||| ||| | || || | ||| |||
Sbjct 458 TAAAGCCGTATA-TTGAGGCTTTGAGGATGCAGCTTG-ATGGA-CTTCCTAG-TGGAACC 513
Query 480 ATCGTAACCACGGTCCAGCCTAGCCG-CGACAACTGCCTAGCCGAGGAGTCTCGGGTTAT 538
|| || |||||||| |||| || || || |||||| || ||||||||||| || || |
Sbjct 514 ATTGTGACCACGGTTAAGCCAAGTCGTCG-CAACTGTCTTGCCGAGGAGTCACGTGTCAC 572
Query 539 ATGG-TCTGATGGTAAGCTCGTTCAAGATATAGTTCTTAGGCTGAGACATGTCGAATGTG 597
|||| || || || |||||||| || ||| | ||||| || || ||||||| ||||| |
Sbjct 573 ATGGGTC-GACGGCAAGCTCGTCCAGGATCTCGTTCTCAGATTGCGACATGTGGAATGCG 631
Query 598 GTGAGGTTGAGGCTCAACTTCAATGGATTGATCTTCCC-GGA---AAGGGTCTATGA-T- 651
| ||||| |||||||||||||||||||||||||| ||| || |||||||||||| |
Sbjct 632 GAGAGGTCGAGGCTCAACTTCAATGGATTGATCT-CCCTGGCTCCAAGGGTCTATGAATC 690
Query 652 TTGTTTTCT 660
|| ||||||
Sbjct 691 TT-TTTTCT 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29735875260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5