BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48598.1
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473996 jgi|Araly1|473996|fgenesh2_kg.1__3950__AT1G48598.1 3000 0.0
Ahg479286 jgi|Araly1|479286|fgenesh2_kg.3__1987__AT3G18000.1 1533 0.0
> Ahg473996 jgi|Araly1|473996|fgenesh2_kg.1__3950__AT1G48598.1
Length=1974
Score = 3000 bits (1624), Expect = 0.0
Identities = 1874/1988 (94%), Gaps = 44/1988 (2%)
Strand=Plus/Plus
Query 1 ACCATCACTTCCCGGAGAAATCTGAGGGAATTGAGTCTCGAGGAGTTCAAATTTGTGAAA 60
|||||| ||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 1 ACCATCGCTTCCCGGAGAAATCTGAGGGAATTGAGTCT-GAGGAGTTC-------T--AA 50
Query 61 TTGATCGACATGAATCAAAGAGG-AAGATCCACCAATCGTAGATCAAGGAGCTTCTCTAG 119
||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 51 TTGTTCGACATGAATCAAAGAGGAAAG-TCCAACAATCGTAGATCAAGGAGCTTCTCTAG 109
Query 120 ATCCAGACTCGCCGTTGAAGGCCATTGAAATCTCCCATCACA------TTTCTCTATCGT 173
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 110 ATCCAGACTCGCCGTTGAAGGCCATTGAAATCTCCCTTCACATTTCTCTTTCTCTATCGT 169
Query 174 CTTCTTCCTTTTGAGTTTTCCGACGACCTCTCCAAAAATGGCGACACCATACAAGGAAGA 233
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 170 CTTCTTCCTTCTGAGTTTTCCGACGACCTCTCCAAAAATGGCGACACCTTACAAGGAAGA 229
Query 234 GAGAGATATCCAGAAA-AGCTACTGGATGGAGCATTCTAGTGATTTGACTGTTGAAGCTA 292
|||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 230 GAGAGATATCCA-AAAGAGTTACTGGATGGAGCATTCTAGTGATTTGACTGTTGAAGCTA 288
Query 293 TGATGCTTGACTCTAAAGCTTCTGATCTTGACAAAGAAGAACGTCCTGAGGTACTCTCTT 352
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 289 TGATGCTTGACTCCAAAGCTTCTGATCTCGACAAAGAAGAACGTCCTGAGGTACTCTCTT 348
Query 353 TAATCCCACCATATGAAGGGAAATCTGTGCTTGAACTTGGAGCTGGTATTGGTCGTTTCA 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TAATCCCACCATATGAAGGGAAATCTGTGCTTGAACTTGGAGCTGGTATTGGTCGTTTCA 408
Query 413 CTGGTGAATTGGCTCAAAAGGCTGGTGAAGTTATCGCTCTTGACTTCATCGAAAGCGCGA 472
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 409 CTGGTGAATTAGCTCAAAAGGCTGGTGAAGTTATCGCTCTTGACTTTATCGAAAGCGCGA 468
Query 473 TTCAGAAGAATGAAAGTGTTAATGGGCATTACAAGAACATCAAGTTTATGTGTGCTGATG 532
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TTAAGAAGAATGAAAGTGTTAATGGGCATTACAAGAACATCAAGTTTATGTGTGCTGATG 528
Query 533 TAACATCTCCAGACTTGAAAATCAAAGATGGATCTATCGACTTGATTTTCTCAAACTGGT 592
|||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 529 TAACATCTCCTGACCTGAAAATCGCTGATGGATCTATTGACTTGATTTTCTCAAACTGGT 588
Query 593 TGCTCATGTATCTCTCTGATAAAGAGGTGGAACTAATGGCAGAGAGAATGATTGGATGGG 652
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 589 TGCTCATGTATCTCTCTGATAAAGAGGTGGAACTTATGGCAGAGAGAATGATTGGATGGG 648
Query 653 TCAAGCCAGGGGGATACATTTTCTTCAGAGAATCTTGCTTCCATCAATCTGGGGACAGCA 712
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TAAAGCCAGGGGGATACATTTTCTTCAGAGAATCTTGCTTCCATCAATCTGGGGACAGCA 708
Query 713 AGCGAAAGTCAAACCCCACTCACTACCGTGAACCCAGATTCTACACAAAGGTTTTCCAGG 772
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| | |
Sbjct 709 AGCGAAAGTCAAACCCCACCCACTACCGTGAACCCAGATTCTATACAAAGGTTTTCAAAG 768
Query 773 AATGTCAGACACGTGATGCTTCTGGCAATTCATTTGAGCTCTCTATGGTTGGCTGCAAAT 832
|||| ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||
Sbjct 769 AATGCCAGACACGTGATGGTTCTGGCAATTCATATGAGCTCTCTATGGTTGGTTGCAAAT 828
Query 833 GCATTGGGGCTTATGTGAAGAACAAGAAGAATCAGAATCAGATTTGCTGGATATGGCAAA 892
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 829 GCATTGGGGCTTATGTGAAGAACAAGAAGAATCAAAATCAGATTTGCTGGATTTGGCAAA 888
Query 893 AAGTCAGCGTGGAGAATGACAAGGATTTCCAGCGTTTCTTGGACAATGTTCAATACAAGT 952
|||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 889 AAGTCAGCTTGGAGAATGACAAGGACTTCCAGCGTTTCCTGGACAATGTTCAATACAAGT 948
Query 953 CTAGTGGGATCTTGCGCTATGAGCGTGTCTTTGGGGAAGGATATGTGAGCACTGGTGGAT 1012
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 CCAGTGGGATCTTGCGCTATGAGCGTGTCTTTGGGGAAGGATATGTGAGCACTGGTGGAT 1008
Query 1013 TTGAGACAACTAAAGAATTTGTGGCGAAGATGGACCTTAAACCGGGACAGAAAGTCCTAG 1072
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1009 TTGAGACAACTAAAGAATTTGTGGCGAAGATGGATCTTAAACCCGGACAGAAAGTCCTAG 1068
Query 1073 ATGTTGGTTGTGGTATCGGTGGAGGTGACTTCTACATGGCTGAGAATTTCGATGTTCATG 1132
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 ATGTTGGTTGTGGTATTGGTGGAGGTGACTTCTACATGGCTGAGAATTTCGATGTTCATG 1128
Query 1133 TTGTTGGAATCGATCTGTCGGTCAACATGATCTCTTTCGCACTGGAGCGGGCCATTGGAC 1192
|||||||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct 1129 TTGTTGGAATCGATCTATCGGTCAACATGATCTCATTCGCATTGGAGCGTGCCATTGGAC 1188
Query 1193 TCAAATGCTCAGTCGAGTTTGAAGTCGCTGATTGCACCACCAAAACATATCCCGATAATT 1252
|||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||
Sbjct 1189 TCAAATGCTCAGTCGAGTTTGAAGTCGCGGACTGCACCACAAAAACATATCCTGATAATT 1248
Query 1253 CCTTTGATGTCATTTACAGCCGTGACACTATTCTGCACATCCAAGACAAGCCAGCTCTAT 1312
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1249 CCTTCGATGTCATTTACAGCCGTGACACTATACTGCACATCCAAGACAAGCCAGCTCTAT 1308
Query 1313 TCAGGACATTCTTCAAGTGGCTTAAACCAGGGGGTAAAGTTCTCATCACTGACTATTGCA 1372
||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1309 TCAGGGCATTCTTCAAGTGGCTTAAACCAGGCGGTAAAGTTCTCATCACCGACTATTGCA 1368
Query 1373 GAAGTGCTGAAACTCCGTCTCCTGAATTCGCAGAGTACATAAAACAAAGAGGATATGATC 1432
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1369 GAAGTGCTGAAACTCCGTCTCCTGATTTCGCAGAGTACATAAAACAAAGAGGATATGATC 1428
Query 1433 TACATGATGTTCAAGCTTACGGACAGATGCTGAAAGACGCAGGCTTTGACGACGTTATCG 1492
| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 1429 TCCATGATGTTCAAGCTTACGGACAGATGCTGAAAGACGCAGGCTTTGAGGATGTGATCG 1488
Query 1493 CTGAGGACCGTACTGATCAGTTTGTACAAGTCCTCAGGCGTGAATTAGAAAAAGTGGAGA 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 CTGAGGACCGTACTGATCAGTTTGTACAAGTCCTCAGGCGTGAATTAGAAAAAGTGGAGA 1548
Query 1553 AAGAAAAGGAAGAATTCATCAGCGACTTCTCAGAAGAGGATTACAATGACATTGTTGGAG 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 AAGAAAAGGAAGAATTCATCAGCGACTTCTCAGAAGAGGATTACAATGACATTGTTGGAG 1608
Query 1613 GATGGTCGGCAAAGCTTGAAAGGACTGCATCTGGTGAACAGAAATGGGGATTATTCATAG 1672
||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1609 GATGGACAGCAAAGCTTGAAAGGACTGCATCTGGTGAACAAAAATGGGGATTATTCATAG 1668
Query 1673 CCGACAAGAAGTAAAATCCATGTTTTT-ATCC-CAAAACTCT--GGTGATTCATTTCCCT 1728
|| |||||||||||||||||||||||| | || ||||||||| ||||||||||||||||
Sbjct 1669 CCAACAAGAAGTAAAATCCATGTTTTTTA-CCACAAAACTCTATGGTGATTCATTTCCCT 1727
Query 1729 TCAATAAAACCGTTCCTTTGGAGGACAATATCTGCTTGTTT-ACTATCATGGAACTGCAA 1787
||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1728 TCAATAAAACCGTCCCTTTGGAGGACAATATCTGCTTGTTTTACCATCATGGAACTGCAA 1787
Query 1788 ATCAAAAGATAAACTCATGTGTTGTTTCGATTCTTACTCGAGTCGTTGTGCCACATAAAA 1847
||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 1788 ATCAAAAGAAAAACTCATGTGTTGTTTCGATTTTTACT-GAGTCTTTGTGCCACATAAAA 1846
Query 1848 CCTGCATTGCTTTGATTTTCCAT---T------AAATATCTGCATAACATTCAAGGGTAA 1898
||||||||||||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 1847 CCTGCATTGCTTTGATTTTCCATAGATGTTTTCAAATATCTGCATAAGATTCAAGGGTAA 1906
Query 1899 TCGAT-GTTT------TTTGTTCTTAGTGTATTCAAGAACAA-AGTTACATTTATGACAT 1950
||||| ||| |||||||||||||||||||| ||||| || ||||||||| | ||
Sbjct 1907 TCGATTGTTCAGAGAATTTGTTCTTAGTGTATTCAAAAACAAGAGATACATTTATCATAT 1966
Query 1951 GGGCTAAT 1958
||||||||
Sbjct 1967 GGGCTAAT 1974
> Ahg479286 jgi|Araly1|479286|fgenesh2_kg.3__1987__AT3G18000.1
Length=1781
Score = 1533 bits (830), Expect = 0.0
Identities = 1285/1501 (86%), Gaps = 46/1501 (3%)
Strand=Plus/Plus
Query 209 AAATGGC-GACACCATACAAGGAAGAGAGAGATATCCAGAA-AAGCTACTGGATGGAGCA 266
||||||| | || | ||| |||||||| | ||||||||||| || |||||||| |||||
Sbjct 120 AAATGGCTG-CATCGTACGAGGAAGAGCGTGATATCCAGAAGAA-TTACTGGATAGAGCA 177
Query 267 TTCTAG-TGATTTGACTGTTGAAGCTATGATGCTTGACTCTAAAGCTTCTGATCTTGACA 325
||| | ||||||||||||||||||||||||||||||||| | |||||||||||| ||||
Sbjct 178 TTC-GGCTGATTTGACTGTTGAAGCTATGATGCTTGACTCCAGAGCTTCTGATCTCGACA 236
Query 326 AAGAAGAACGTCCTGAGGTACTCTCTTTAATCCCACCATATGAAGGGAAATCTGTGCTT- 384
| |||||||||||||||||||||||||| |||| |||||||||| ||||| ||| ||
Sbjct 237 AGGAAGAACGTCCTGAGGTACTCTCTTTGCTCCCTTCATATGAAGGCAAATCAGTG-TTG 295
Query 385 GAACTTGGAGCTGGTATTGGTCGTTTCACTGGTGAATTGGCTCAAAAGGCTGGTGAAGTT 444
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 296 GAACTTGGAGCTGGTATTGGTCGTTTCACTGGTGAATTGGCTCAAAAAGCTGGTGAACTC 355
Query 445 ATCGCTCTTGACTTCATCGAAAGCG-CGATTCA-GAAGAATGAAAGTGTTAATGGGCATT 502
|| |||||||||||||| || || | | || || ||||||||||||||| ||||||||||
Sbjct 356 ATTGCTCTTGACTTCATTGATAGTGTC-AT-CAAGAAGAATGAAAGTGTCAATGGGCATT 413
Query 503 ACAAGAACATCAAGTTTATGTGTGCTGATGTAACATCTCCAGACTTGAAAATCAAAGATG 562
||||||| |||||||||||||||||||||| ||||| || ||| | || |||| ||||
Sbjct 414 ACAAGAATGTCAAGTTTATGTGTGCTGATGTTACATCCCCTGACCTCAAGATCACTGATG 473
Query 563 GATCTATCGACTTGATTTTCTCAAACTGGTTGCTCATGTATCTCTCTGATAAAGAGGTGG 622
|||| | |||||||||||||| |||||| |||| |||||||| ||||| ||||||||||
Sbjct 474 GATCCCTTGACTTGATTTTCTCCAACTGGCTGCTTATGTATCTTTCTGACAAAGAGGTGG 533
Query 623 AACTAATGGCAGAGAGAATGATTGGATGGGTCAAGCCAGGGGGATACATTTTCTTCAGAG 682
| || |||| || || ||| |||||||| ||||| || ||||| ||||||||| | |
Sbjct 534 AGCTTTTGGCTGAAAGGATGGTTGGATGGATCAAGGTTGGAGGATATATTTTCTTCCGTG 593
Query 683 AATCTTGCTTCCATCAATCTGGGGACAGCAAGCG-AAAGTCAAACCCCACTCACTACCGT 741
||||||||||||| ||||| |||||||| ||||| ||| || ||||| ||||||||||||
Sbjct 594 AATCTTGCTTCCACCAATCCGGGGACAGTAAGCGGAAA-TCCAACCCGACTCACTACCGT 652
Query 742 GAACC-CAGATTCTACA-CAAAGGT-TTTCCAGGAATGTCAGACACGTGATGCTTCTGGC 798
||||| | | ||||| | ||| ||| |||| || |||||||||| || |||||| ||||
Sbjct 653 GAACCTC-GTTTCTATAGCAA-GGTCTTTCAAG-AATGTCAGACTCGGGATGCTGCTGGG 709
Query 799 AATTCATTTGAGCTCTCTATGGTTGGCTGCAAATGCATTGGGGCTTATGTGAAGAACAAG 858
||||||||||||||||||||| | || ||||| |||||||| |||||||| |||||||||
Sbjct 710 AATTCATTTGAGCTCTCTATGATCGGATGCAAGTGCATTGGAGCTTATGTAAAGAACAAG 769
Query 859 AAGAATCAGAATCAGATTTGCTGGATATGGCAAAAAGTCAGCGTG-GAGAATGACA-AGG 916
|||||||||||||||||||| ||||||||||| || |||||| | || ||||||| |||
Sbjct 770 AAGAATCAGAATCAGATTTGTTGGATATGGCAGAAGGTCAGC-TCAGAAAATGACAGAGG 828
Query 917 ATTTCCAGCGTTTCTTGGACAATGTTCAATACAAGTCTAGTGGGATCTTGCGCTATGAGC 976
|| ||| |||||||||||||||||||||||||| || ||||| ||| | ||||||||||
Sbjct 829 CTT-CCAACGTTTCTTGGACAATGTTCAATACAAATCCAGTGGAATCCTACGCTATGAGC 887
Query 977 GTGTCTTTGGGGAAGGATATGTGAGCACTGGTGGATTTGAGACAACTAAAGAATTTGTGG 1036
|||||||||| |||| | |||||||||||||||| |||||||||| |||||||||||||
Sbjct 888 GTGTCTTTGGCCAAGGGTTTGTGAGCACTGGTGGACTTGAGACAACCAAAGAATTTGTGG 947
Query 1037 CGAAGATGGACCTTAAACCGGGACAGAAAGTCCTAGATGTTGGTTGTGGTATCGGTGGAG 1096
||| ||| | || ||||| ||||||||||| |||||||||| ||||| || |||||||
Sbjct 948 AGAAAATGAATCTGAAACCAGGACAGAAAGTGTTAGATGTTGGGTGTGGCATTGGTGGAG 1007
Query 1097 GTGACTTCTACATGGCTGAGAA-TTTCGATGTTCATGTTGTTGGAATCGATCTGTCGGTC 1155
||||||| || ||||||||||| ||| ||||||||||||||||| |||||||| || |||
Sbjct 1008 GTGACTTTTATATGGCTGAGAAGTTT-GATGTTCATGTTGTTGGTATCGATCTCTCTGTC 1066
Query 1156 AACATGATCTCTTTCGCACTGGAGCGGGCCATTGGACTCAAATGCTCAGTCGAGTTTGAA 1215
||||||||||||||||| |||| || || ||||||||||| ||||| || ||||||||
Sbjct 1067 AACATGATCTCTTTCGCGTTGGAACGTGCTATTGGACTCAACTGCTCGGTTGAGTTTGAG 1126
Query 1216 GTCGCTGATTGCACCACCAAAACA-TATCCC-GATAATTCCTTTGATGTCATTTACAGCC 1273
|| ||||||||||| || |||||| || ||| |||||||| || ||||||||||||||||
Sbjct 1127 GTTGCTGATTGCACTAC-AAAACACTA-CCCAGATAATTCATTCGATGTCATTTACAGCC 1184
Query 1274 GTGACACTATTCTGCACATCCAAGACAAGCCAGCTCTA-TTCAGGACATTCTTCAAGTGG 1332
|||||||||||||||||||||||||||| ||||| || || ||||| ||||||||||||
Sbjct 1185 GTGACACTATTCTGCACATCCAAGACAAACCAGC-CTTGTTTAGGACTTTCTTCAAGTGG 1243
Query 1333 CTTAAACCAGGG-GGTAAAGTTCTCATCA-CTGACTATTGCAGAAGTGCTGAAACTCCGT 1390
|||||||| ||| |||||||||||||||| | ||||| || ||||| | ||||||| |
Sbjct 1244 CTTAAACC-GGGAGGTAAAGTTCTCATCAGC-GACTACTGTAGAAGCCCCAAAACTCCAT 1301
Query 1391 CTCCTGAATTCGCAGAGTACATAAAACAAAGAGGATATGATCTACATGATGTTCAAGCTT 1450
|| |||| || |||||||||| ||||| |||||||||||||| || || ||||||||||
Sbjct 1302 CTGCTGAGTTTTCAGAGTACATCAAACAGAGAGGATATGATCTCCACGACGTTCAAGCTT 1361
Query 1451 ACGGACAGATGCTGAAAGACGCAGGCTTTGAC-GACGTTATCGCTGAGGACCGTACTGAT 1509
| ||||||||||| |||||||| |||||| || || || ||||| |||||||||||||||
Sbjct 1362 ATGGACAGATGCTAAAAGACGCTGGCTTT-ACTGATGTGATCGCAGAGGACCGTACTGAT 1420
Query 1510 CAGTTTGTACAAGTCCTCAGGCGTGAATTAGAAAAAGTGGAGAAAGAAAAGGAAGAATTC 1569
|||||| | |||||||| | ||||||||||||| ||||||||||||||||||||||||
Sbjct 1421 CAGTTTATGCAAGTCCTGAAACGTGAATTAGAAAGGGTGGAGAAAGAAAAGGAAGAATTC 1480
Query 1570 ATCAGC-GACTTCTC-AGAAGAGGATTACAATGACATTGTTGGAGGATGGTCGGCAAAGC 1627
|| | | |||||||| | ||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 1481 AT-ATCCGACTTCTCCA-AAGAGGATTACGATGATATTGTTGGAGGATGGAAGGCAAAGC 1538
Query 1628 TTGAAAGGACTGCATCTGG-TGAACAGAAATGGGGA-TTATTCATAGCCGACAAGAAGTA 1685
| || ||| |||||| || ||| |||||||||||| || ||||| ||| ||||||| ||
Sbjct 1539 TGGAGAGGTGTGCATC-GGATGAGCAGAAATGGGGACTT-TTCATCGCCAACAAGAATTA 1596
Query 1686 A 1686
|
Sbjct 1597 A 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73780804565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5