BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48605.1
Length=644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314295 jgi|Araly1|314295|fgenesh1_pm.C_scaffold_1003075 989 0.0
> Ahg314295 jgi|Araly1|314295|fgenesh1_pm.C_scaffold_1003075
Length=1272
Score = 989 bits (535), Expect = 0.0
Identities = 612/648 (94%), Gaps = 9/648 (1%)
Strand=Plus/Plus
Query 1 GATCCTCCTTCCTCGGCTGTAACAAGATAGAGAAGAAGATGAATATGGAAGTGGATACAG 60
|||||||||||||||||| | |||||| || |||||||||||||| ||||||||||||
Sbjct 630 GATCCTCCTTCCTCGGCTCT-TCAAGAT--AG-AGAAGATGAATATGCAAGTGGATACAG 685
Query 61 TAAC-A--AGGAAGCCTCGTATCTTACTAGCTGCAAGTGGAAGTGTGGCTTCAATTAAGT 117
|||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 686 TAACAAGGAGGAAGCCTCGTATCTTACTAGCTGCAAGTGGAAGTGTGGCTGCAATTAAGT 745
Query 118 TCAGTAATCTCTGCCATTGTTTCTCAGAATGGGCTGAAGTCAAAGCCGTCGCTTCAAAAT 177
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 746 TCAGTAACCTCTGCCATTGTTTCTCAGAATGGGCTGAAGTCAAAGCCGTTGCTTCGAAAG 805
Query 178 CATCTCTCAATTTCGTTGATAAACCTTCTCTACCTC-AGAATGTGACTCTCTATACAGAT 236
|||| || ||||||||||||||||||||||| || | || ||||||||||||||||||||
Sbjct 806 CATCGCTGAATTTCGTTGATAAACCTTCTCTTCCACAAG-ATGTGACTCTCTATACAGAT 864
Query 237 GAAGATGAATGGTCTAGCTGGAACAAGATTGGTGATCCCGTTCTTCATATCGAGCTCAGA 296
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 865 GAAGATGAATGGTCTAGCTGGAACAAGATTGGTGATCCTGTGCTTCACATCGAGCTCAGA 924
Query 297 CGCTGGGCTGATGTTATGATCATTGCTCCTTTGTCTGCTAACACATTAGCCAAGATTGCT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 CGCTGGGCTGATGTTATGATCATTGCTCCTTTGTCTGCTAACACATTAGCCAAGATTGCT 984
Query 357 GGTGGGTTATGTGATAATCTATTGACATGTATAGTAAGAGCATGGGATTATAGCAAACCG 416
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 985 GGTGGGTTATGTGATAATCTATTGACATGTATAGTAAGAGCGTGGGATTATAACAAACCG 1044
Query 417 TTGTTTGTTGCACCGGCGATGAACACTTTGATGTGGAACAATCCTTTCACAGAACGGCAC 476
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TTGTTCGTTGCACCGGCGATGAACACTTTGATGTGGAACAATCCTTTCACAGAACGGCAC 1104
Query 477 CTTGTCTTGCTTGATGAACTTGGAATCACCCTAATTCCTCCCATCAAGAAGAAACTGGCC 536
||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 1105 CTTGTGTTGCTTGATGAACTGGGAATCACTCTCATTCCTCCCATCAAGAAGAAACTGGCC 1164
Query 537 TGTGGAGACTACGGTAATGGCGCAATGGCTGAGCCTTCTCTGATTTATTCCACTGTTAGA 596
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1165 TGTGGAGATTACGGTAACGGCGCAATGGCTGAGCCTTCTCTGATCTATTCCACTGTTAGA 1224
Query 597 CTGTTCTGGGAGTCACAAGCTCGTAAACAAAGAGATGGAACCAGTTGA 644
||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1225 CTGTTCTGGGAGTCACAGGCTCGTAAACAAAGTGATGGAACCAGTTGA 1272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23598085623
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5