BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48605.1 Length=644 Score E Sequences producing significant alignments: (Bits) Value Ahg314295 jgi|Araly1|314295|fgenesh1_pm.C_scaffold_1003075 989 0.0 > Ahg314295 jgi|Araly1|314295|fgenesh1_pm.C_scaffold_1003075 Length=1272 Score = 989 bits (535), Expect = 0.0 Identities = 612/648 (94%), Gaps = 9/648 (1%) Strand=Plus/Plus Query 1 GATCCTCCTTCCTCGGCTGTAACAAGATAGAGAAGAAGATGAATATGGAAGTGGATACAG 60 |||||||||||||||||| | |||||| || |||||||||||||| |||||||||||| Sbjct 630 GATCCTCCTTCCTCGGCTCT-TCAAGAT--AG-AGAAGATGAATATGCAAGTGGATACAG 685 Query 61 TAAC-A--AGGAAGCCTCGTATCTTACTAGCTGCAAGTGGAAGTGTGGCTTCAATTAAGT 117 |||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 686 TAACAAGGAGGAAGCCTCGTATCTTACTAGCTGCAAGTGGAAGTGTGGCTGCAATTAAGT 745 Query 118 TCAGTAATCTCTGCCATTGTTTCTCAGAATGGGCTGAAGTCAAAGCCGTCGCTTCAAAAT 177 ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 746 TCAGTAACCTCTGCCATTGTTTCTCAGAATGGGCTGAAGTCAAAGCCGTTGCTTCGAAAG 805 Query 178 CATCTCTCAATTTCGTTGATAAACCTTCTCTACCTC-AGAATGTGACTCTCTATACAGAT 236 |||| || ||||||||||||||||||||||| || | || |||||||||||||||||||| Sbjct 806 CATCGCTGAATTTCGTTGATAAACCTTCTCTTCCACAAG-ATGTGACTCTCTATACAGAT 864 Query 237 GAAGATGAATGGTCTAGCTGGAACAAGATTGGTGATCCCGTTCTTCATATCGAGCTCAGA 296 |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct 865 GAAGATGAATGGTCTAGCTGGAACAAGATTGGTGATCCTGTGCTTCACATCGAGCTCAGA 924 Query 297 CGCTGGGCTGATGTTATGATCATTGCTCCTTTGTCTGCTAACACATTAGCCAAGATTGCT 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 925 CGCTGGGCTGATGTTATGATCATTGCTCCTTTGTCTGCTAACACATTAGCCAAGATTGCT 984 Query 357 GGTGGGTTATGTGATAATCTATTGACATGTATAGTAAGAGCATGGGATTATAGCAAACCG 416 ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 985 GGTGGGTTATGTGATAATCTATTGACATGTATAGTAAGAGCGTGGGATTATAACAAACCG 1044 Query 417 TTGTTTGTTGCACCGGCGATGAACACTTTGATGTGGAACAATCCTTTCACAGAACGGCAC 476 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1045 TTGTTCGTTGCACCGGCGATGAACACTTTGATGTGGAACAATCCTTTCACAGAACGGCAC 1104 Query 477 CTTGTCTTGCTTGATGAACTTGGAATCACCCTAATTCCTCCCATCAAGAAGAAACTGGCC 536 ||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct 1105 CTTGTGTTGCTTGATGAACTGGGAATCACTCTCATTCCTCCCATCAAGAAGAAACTGGCC 1164 Query 537 TGTGGAGACTACGGTAATGGCGCAATGGCTGAGCCTTCTCTGATTTATTCCACTGTTAGA 596 |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 1165 TGTGGAGATTACGGTAACGGCGCAATGGCTGAGCCTTCTCTGATCTATTCCACTGTTAGA 1224 Query 597 CTGTTCTGGGAGTCACAAGCTCGTAAACAAAGAGATGGAACCAGTTGA 644 ||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1225 CTGTTCTGGGAGTCACAGGCTCGTAAACAAAGTGATGGAACCAGTTGA 1272 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23598085623 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5