BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48620.1
Length=1979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474000 jgi|Araly1|474000|fgenesh2_kg.1__3954__AT1G48620.1 2704 0.0
Ahg914004 jgi|Araly1|914004|Al_scaffold_0001_4258 944 0.0
Ahg479291 jgi|Araly1|479291|fgenesh2_kg.3__1992__AT3G18035.1 73.1 7e-12
> Ahg474000 jgi|Araly1|474000|fgenesh2_kg.1__3954__AT1G48620.1
Length=1913
Score = 2704 bits (1464), Expect = 0.0
Identities = 1806/1959 (92%), Gaps = 71/1959 (4%)
Strand=Plus/Plus
Query 14 aaaaaaaaaaaactaaaaatcaaaaaTCTCATCACCTTCCTTGCTCTGT-ATTTTTTCTC 72
||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 1 AAAAAAAAAAACCTAAAAATCAAAAATCTCATCACCTTCCTTGTTCTGTAATATTTTCTC 60
Query 73 TCTCACTAAATCCTCCATGGATCCTTCTCTCTCTGCAACCAATGATCCTCATCATCCTCC 132
||| ||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TCT--CTAAA---TCCATGGATCCTTCTCTCTCTGTAACCAATGATCCTCATCA------ 109
Query 133 TCCTCCTCAGTTCACATCTTTCCCTCCTTT---CACCAACACCAACCCCTTCGCCTCTCC 189
|||||||||||||||||||||||||||||| ||||||| ||||||| ||| || |||
Sbjct 110 TCCTCCTCAGTTCACATCTTTCCCTCCTTTCACCACCAACTCCAACCCTTTCTCCACTCA 169
Query 190 AAACCACCCCTTCTTCACCGGACCCACCGCCGTCGCGCCGCCAAACAACATCCATCTCTA 249
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 170 AAACCACCCCTTCTTCACCGGAGCCACCGCCGTCGGGCCGCCAAACAACATCCATCTCTA 229
Query 250 TCAAGCAGCTCCTCCGCAGCAGCCACAAACATCTCCAGTTCCTCCTCATCCATCTATTTC 309
|| | ||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 TC-A--AGCTCCTCCTCCGCAGCCACAAACATCTCCAGTTCCTCCTCATCCATCTATTTC 286
Query 310 CCACCCTCCTTACTCTGACATGATTTGCACGGCGATTGCAGCGTTAAACGAACCAGATGG 369
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 287 CCACCCTCCTTACTCTGACATGATTTGTACGGCGATTGCAGCGTTAAACGAACCAGATGG 346
Query 370 GTCAAGCAAGCAAGCTATTTCGAGGTACATAGAGAGAATTTACACTGGGATTCCTACTGC 429
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 347 GTCAAGCAAGCAAGCGATTTCGAGGTACATCGAAAGAATTTACACTGGGATTCCTACTGC 406
Query 430 TCATGGAGCTTTGTTGACACACCATCTCAAGACTTTGAAGACCAGTGGGATTCTTGTCAT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 407 TCATGGAGCTTTGTTGACACACCATCTCAAGACTTTGAAGACCAGTGGGATTCTTATGAT 466
Query 490 GGTTAAGAAATCTTACAAGCTT-GCTTCTActcctcctcctcctcctcctACTAG-TGTA 547
||||||||||||||||||| || ||||||| ||||||||||| || | ||| || |
Sbjct 467 GGTTAAGAAATCTTACAAG-TTAGCTTCTA---CTCCTCCTCCTACTAGT-GTAGCTGCA 521
Query 548 GCTCCTAGTCTTGAACCTCCCAGATCTGATTTCATAGTCAACGAGAACCAACCTTTACCT 607
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 GCTTCTGGTCTTGAACCTCCCAGATCTGATTTCATAGTCAACGAGAACCAACCTTTACCT 581
Query 608 GATCCGGTTTTGGCTTC-T-T-CTACTCCTCAGACTATTAAACGTGGTCGTGGTCGACCT 664
||||||| ||||||||| | | |||||||||||||| | |||||||||||||||||||||
Sbjct 582 GATCCGGGTTTGGCTTCTTCTACTACTCCTCAGACTCTGAAACGTGGTCGTGGTCGACCT 641
Query 665 CCAAAAG-CTAAACCAGATGTTGTTCAACCTCAACCT-CTGACTAATGGAAAACTCACCT 722
|| |||| |||||||||||||||||||||||||| || | |||||||||||||| |||||
Sbjct 642 CC-AAAGACTAAACCAGATGTTGTTCAACCTCAA-CTCCAGACTAATGGAAAACCCACCT 699
Query 723 GGGAACAGAGTGAATTACCTGTCTCTCGACCAGAGGAGATACAGATACAGCCGCCACAGT 782
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 700 GGGAACAGAGTGAATTACCTGTTTCTCGACCAGAGGAGATACAGATACA---GCCACAG- 755
Query 783 TACCGTTACAGCCACAGCAGCCGGTTAAGAGACCGCCGGGTCGTCCTAGAAAAGATGGAA 842
|| |||| | | | | |||||||||||||||||||||||||||||||||| |||
Sbjct 756 --CC---ACAG-C-C-G-A--CGGTTAAGAGACCGCCGGGTCGTCCTAGAAAAGACGGAG 804
Query 843 CTTCGCCGACGGTGAAGCCAGCTGCTTCTGTTTCCGGTGGTGTGGAGACTGTGAAACGAA 902
|||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 805 CTTCACCGACAGTGAAGGCAGCTGCTTCTGTTTCCGGCGGTGTGGAGACTGTGAAACGAA 864
Query 903 GAGGTAGACCTCCGAGTGGAAGAGCTGCTGGGAGGGAGAGAAAGCCTATAGTAGTCTCAG 962
||||||| ||||||||||||||||||| |||||| ||||| |||||||| ||||||||||
Sbjct 865 GAGGTAGGCCTCCGAGTGGAAGAGCTGTTGGGAGAGAGAGGAAGCCTATTGTAGTCTCAG 924
Query 963 CTCCAGCTTCAGTGTTCCCGTATGTTGCTAATGGTGGTGTTAGACGCCGAGGGAGACCAA 1022
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 CTCCGGCTTCGGTGTTCCCGTATGTTGCTAATGGTGGTGTTAGACGCCGAGGGAGACCAA 984
Query 1023 AGAGAGTTGACGCTGGTGGTGCTTCCTCTGTTGCTccaccaccaccaccaccaACTAACG 1082
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 985 AGAGAGTTGACGCTGGTGGTGCTTCCTCTGTTGCACCACCACCACCACCGCCACCTAACG 1044
Query 1083 TAGAGAGTGGAGGAGAGGAGGTTGCAGTCAAGAAACGAGGAAGAGGACGGCCTCCTAAGA 1142
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 CGGAGAGTGGAGGAGAGGAGGTTGCAGTCAAGAAACGAGGAAGAGGACGGCCTCCTAAGG 1104
Query 1143 TTGGAGGTGTTATCAGGAAGCCTATGAAGCCGATGAGAAGCTTTGCTCGTACTGGAAAAC 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1105 TTGGAGGTGTTATCAGGAAGCCTATGAAGCCGATGAGAAGCTTTGCTCGTACTGGAAGAC 1164
Query 1203 CCGTAGGAAGACCCAGAAAGAATGCGGTGTCAGTGGGAGCTTCTGGACGACAAGATGGTG 1262
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 CCTTAGGAAGACCCAGAAAGAATGCGGTGTCAGTGGGAGCTTCTGGACGACAAGATGGTG 1224
Query 1263 ACTATGGAGAACTGAAGAAGAAGTTTGAGTTGTTTCAAGCGAGAGCTAAGGATATTGTAA 1322
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1225 ATTATGGAGAACTTAAGAAGAAGTTTGAGTTGTTTCAAGCGAGAGCTAAGGATATTGTTA 1284
Query 1323 TTGTGTTGAAATCCGAGATAGGAGGAAGTGGAAATCAAGCAGTGGTTCAAGCCATACAGG 1382
||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1285 TTGTGTTGAAATCTGAGATTGGAGGAAGTGGAAATCAAGCGGTGGTTCAAGCCATACAGG 1344
Query 1383 ACCTGGAAGGGATAGCAGAGACAACAAACGAGCCA-AA--GCACATGGAAGAAGTGCAGC 1439
||||||||||| || | |||||||||||||||||| || ||||||| |||| ||||||
Sbjct 1345 ACCTGGAAGGGCTAACCGAGACAACAAACGAGCCACAACAGCACATGCCAGAATTGCAGC 1404
Query 1440 TGCCAGACGAGGAACACCTTGAAACCGAACCAGAAGCAGAGGGTCAAGGACAGACAGAAG 1499
|||||||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 1405 TGCCAGACGAGGAACACCCTGAAACCGAACCCGAACCAGAGGGACAAGGACAGACAGAAG 1464
Query 1500 CAGAGGCAATGCAAGAAGCTCTGTTCTAAAGATAAAGCCTTGACATAAAAAGCTAGCAAG 1559
|||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct 1465 CAGAGGCAATGCAAGAAGCTCTGTTCTAAAGAGA--GCCTTGACACAAAAAGCTAGCAAG 1522
Query 1560 TGGTGGGTTTACTTGTTGTGTGTTACATGAAATTTTTAATCTT-ATAAGGGTGTTTGCAG 1618
|||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1523 TGGTGGGTTTGTTTGTTGTGTGTTCCATGAAATTTTTAATCTTTATAAGGGTGTTTGCAG 1582
Query 1619 GAGAAAAACAAAAAGAACAATGTGATGAACTGATGAT-GATGATTGTGTCTCTAACCAAA 1677
|||||||||||||||||||||||||||| ||||||| | || |||||||||||||||||
Sbjct 1583 GAGAAAAACAAAAAGAACAATGTGATGA--TGATGATTG-TG-TTGTGTCTCTAACCAAA 1638
Query 1678 CAACAAGGAGAGGTAGGGTAATGTCTGTAAAGTGAATTAGGATGTTACCATTGTTCATGC 1737
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1639 CAACAAGGAGAGGTAGGGTAATGTCAGTAAAGTGAATTAGGATGTTGCCATTGTTCATGC 1698
Query 1738 TTCCCATCTCTCTC-C-ATCGTCCATATCTGTGTAGGCAGCTTTGTTCTTTGTTCCCTCG 1795
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 TTCCCATCTCTCTCTCCATCGTCCATATCTGTGTAGGCAGCTTTGTTCTTTGTTCCCTCG 1758
Query 1796 TGttttttttAGACTGTTGTGTCTCTTATTCTATTTTGTCTCCTTAGGCTTTTTAGGAGT 1855
||||||||||||||| | || ||||||||||||||||||||| ||||| |||||||||||
Sbjct 1759 TGTTTTTTTTAGACTCT-GTTTCTCTTATTCTATTTTGTCTC-TTAGGATTTTTAGGAGT 1816
Query 1856 T-GTT-G-T-T-GATGTTTATCAAAAACGCTTATGTAATTTTTATGACCACTTCTACTTT 1910
| ||| | | | |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1817 TTGTTTGGTGTTGATGTTTATCAAAA-CGCTTATGTAATTTTTATGACCACTTCAACTTT 1875
Query 1911 TTATGATGGTTTCTTCA--AGTCTCTTACGTTATGTAGT 1947
| |||||||||||||| |||||||||||| |||||||
Sbjct 1876 T-ATGATGGTTTCTTCTTCAGTCTCTTACGTGATGTAGT 1913
> Ahg914004 jgi|Araly1|914004|Al_scaffold_0001_4258
Length=1014
Score = 944 bits (511), Expect = 0.0
Identities = 738/844 (87%), Gaps = 30/844 (4%)
Strand=Plus/Plus
Query 663 CTCCAAAAGCTAAACCAGATGTTGTTCAACCTCAACCTCTGACTAATGGAAAACTC-ACC 721
|||||||| ||||||| || |||||||||||||||| |||||| || |||| | |||
Sbjct 131 CTCCAAAACCTAAACC---TGAAGTTCAACCTCAACCTCAGACTAACGGGAAAC-CAACC 186
Query 722 TGGGAACAGAGTGAATTACCTGTCTCTCGACCAGAGGA-GATACAGATACAGCCGCCACA 780
|||||||| |||||||||||||| |||| |||| |||| || | | || || | ||| ||
Sbjct 187 TGGGAACAAAGTGAATTACCTGTTTCTCAACCACAGGATGAGATACATCCA-CAGCCGCA 245
Query 781 GTTACCGTTACAGCCACAGCAGCCGGTTAAGAGACCGCCGGGTCGTCCTAGAAAAGATGG 840
| || | ||||||||| || ||| ||||||| || || || ||||||||||| |||||
Sbjct 246 GGCACAGATACAGCCAC--CA-CCGATTAAGAGGCCACCAGGACGTCCTAGAAAGGATGG 302
Query 841 AACTTCGCCGACGGTGAAGCCAGCTGCTTCTGTTTCCGGTGGTGTGGAGACTGTGAAACG 900
| ||| ||| || |||||| | |||||||||||||||||||||||||| | |||||||||
Sbjct 303 AGCTTTGCCTACAGTGAAGACTGCTGCTTCTGTTTCCGGTGGTGTGGAAATTGTGAAACG 362
Query 901 AAGAGGTAGACCTCCGAGTGGAAGAGCTGCTGGGAGGGAGAGAAAGCCTATAG-TAGTCT 959
||||||||||||||||||||||||||||||||| || ||||| ||||||| || || |||
Sbjct 363 AAGAGGTAGACCTCCGAGTGGAAGAGCTGCTGGAAGAGAGAGGAAGCCTACAGTTA-TCT 421
Query 960 CAGCTCCAGCTTCAGTGTTCCCGTATGTTGCTAATGGTGGTGTTAGACGCCGAGGGAGAC 1019
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 422 CAGCTCCGGCTTCGGTGTTCCCGTATGTTGCTAATGGTGGTGTTAGACGCCGAGGGAGGC 481
Query 1020 CAAAGAGAGTTGACGCTGGTGGTGCTTCCTCTGTTGCTccaccaccaccaccaccaACTA 1079
||||||||||||| ||||||| |||| ||||||||||||||||||| |||||| ||
Sbjct 482 CAAAGAGAGTTGATGCTGGTG---CTTCTTCTGTTGCTCCACCACCACAACCACC---TA 535
Query 1080 ACGTAGAGAGTGGAGGAGAGGAGGTTGCAGTCAAGAAACGAGGAAGAGGACGGCCTCCTA 1139
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 536 ACGTAGAGAGTGGAGGAGAGGAAGTTGCAGTCAAGAAACGAGGACGAGGACGGCCTCCTA 595
Query 1140 AGATTGGAGGTGTTATCAGGAAGCCTATGAAGCCGATGAGAAGCTTTGCTCGTACTGGAA 1199
|||| || |||||||| ||||||||||||||||| | |||||||||| |||||||||| |
Sbjct 596 AGATCGGTGGTGTTATTAGGAAGCCTATGAAGCCTAAGAGAAGCTTTACTCGTACTGGTA 655
Query 1200 AACCCGTAGGAAGACCCAGAAAGAATGCGGTGTCAGTGGGAGCTTCTGGACGACAAGATG 1259
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 656 GACCCGTAGGAAGACCCAGAAAGAATGCGGTGTCAGTGAGAGCTTCTGGACAACAAGATG 715
Query 1260 GTGACTATGGAGAACTGAAGAAGAAGTTTGAGTTGTTTCAAGCGAGAGCTAAGGATATTG 1319
||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 716 GTGACTATGGAGAGCTCAAGAAGAAGCTTGAGTTGTTTCAAGCGAGAGCTAAGGATATTG 775
Query 1320 TAATTGTGTTGAAATCCGAGATAGGAGGAAGTGGAAATCAAGCAGTGGTTCAAGCCATAC 1379
| | |||||||||| | ||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 776 TTACTGTGTTGAAAGCTGAGATAGGAGGAACTGAAAATCAAGCGGTGGTTCAAGCCATAC 835
Query 1380 AGGACCTGGAAGGGATA---G---CA-----G-AGACAACAAACGAGCCAAAGCACATGG 1427
||||||||||||||| | | || | ||||||||||| ||||| |||||||||
Sbjct 836 AGGACCTGGAAGGGACAACAGGAACAACAACGGAGACAACAAACAAGCCACAGCACATGG 895
Query 1428 AAGAAGTGCAGCTGCCAGACGAGGAACACCTTGAAACCGAACCAGAAGCAGAGGGTCAAG 1487
||||||||||| |||||||||||||||||| |||||| ||||| ||| ||| ||| ||||
Sbjct 896 AAGAAGTGCAGTTGCCAGACGAGGAACACCCTGAAACTGAACCCGAACCAGTGGGACAAG 955
Query 1488 GACA 1491
||||
Sbjct 956 GACA 959
> Ahg479291 jgi|Araly1|479291|fgenesh2_kg.3__1992__AT3G18035.1
Length=1875
Score = 73.1 bits (39), Expect = 7e-12
Identities = 44/46 (96%), Gaps = 1/46 (2%)
Strand=Plus/Plus
Query 1490 CAGACAGAAGCAGAGGCAATGCAAGAAGCTCTGTTCTAAAGA-TAA 1534
||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1536 CAGACAGAAGCAGAGGCAATGCAAGAAGCTCTGTTCTGAAGAATAA 1581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74390248485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5