BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48625.1
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077 922 0.0
Ahg934582 jgi|Araly1|934582|scaffold_402570.1 560 8e-159
Ahg345622 jgi|Araly1|345622|fgenesh1_pg.C_scaffold_4001964 444 8e-124
Ahg345624 jgi|Araly1|345624|fgenesh1_pg.C_scaffold_4001966 355 4e-97
Ahg947570 jgi|Araly1|947570|scaffold_703799.1 281 7e-75
Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935 200 2e-50
Ahg317222 jgi|Araly1|317222|fgenesh1_pm.C_scaffold_3000238 91.6 1e-17
> Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077
Length=1167
Score = 922 bits (499), Expect = 0.0
Identities = 630/690 (91%), Gaps = 21/690 (3%)
Strand=Plus/Plus
Query 411 GGCAGATCAAAACCCGATATTCTCACCACGCATTCTCCGGAAGGGATAGTACGTACATGT 470
||| |||||||||||||||||||||||| ||||||| ||||| ||| | |||||||||||
Sbjct 387 GGCGGATCAAAACCCGATATTCTCACCATGCATTCTGCGGAAAGGACAATACGTACATGT 446
Query 471 TCAATTACTCTCTCGGATACGAGAATAAGAATTCATGTCGCAGCCACAAATTATTGAGGT 530
|||| || ||||| | || |||||||| |||||||||||||||||||||||||||||
Sbjct 447 TCAACTA--CTCTC---T-CG-GAATAAGAGTTCATGTCGCAGCCACAAATTATTGAGGT 499
Query 531 TTATAGATTATCATTGGAATTATCGCGGCCTACACCAAtttttttGGTATGAAATCTACG 590
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 500 TTATAGATTATCATAGGAATTACCGCGGCCTACACCAATTTTTTTGGTATGAAATCTATG 559
Query 591 ATTTTGACTCGGATTTATGGACAACTCTTGATGTCACTCCACACTGGTTTATAGTTATTT 650
||||| |||| |||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 560 ATTTTAACTCTGATTTATGGACAACTCTTGATGTCACTCCATACTGGTTTATAGCTATTT 619
Query 651 CTCAAAGTGGTGTTTCCCTCAAGGGAAACACATACTGGTGTGCTAGGA-AGAGGAGCGGC 709
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 620 CTCAAAGTGGTGTTTCCCTCATGGGAAACACATACTGGTGTGCTAGGATA-AGGAGCGGC 678
Query 710 GGTTATAGCGATCACATTATTTGTTTTGATTTTACTAGAGAGAGATTTGGACCGCTTTTG 769
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 679 GGTTATAGCGATCACATTATTTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTTTG 738
Query 770 CCTTTGCCGTTTAGCTTTATTGATCGTCATCATTCATGTGTGATTTTATCTTGTGTTAGT 829
|||||||| |||||| ||| | | |||||||||||||||||||||||||||||||
Sbjct 739 CCTTTGCCATTTAGCGTTAG-G---G--ATCATTCATGTGTGATTTTATCTTGTGTTAGA 792
Query 830 GAAGAGAAGCTTGCAGTTTTATTTCAGTAC-AAGGACCACTACTATAAAAATGTAGTTGA 888
|||||||||||||||||||||||||| || || | || |||||| ||| ||||||
Sbjct 793 GAAGAGAAGCTTGCAGTTTTATTTCAACACCAA--ATG--TATTATAAATATGAAGTTGA 848
Query 889 AATATGGATTACAGCTAAGCTTGAGGCCGAAATGGTGTCGTGGAGCAAGTTCTTGAGAAT 948
|||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 849 AATATGGATTACGGTTAAGCTTGAGACCGAAATGGTGTCGTGGAGCAAGTTCTTGAGAAT 908
Query 949 AAATACGGGGCCAATTATACACACGAGTTTCTTCATTAACGAGGAAAAGAAAGTCGCCAT 1008
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 909 AAATACGGGGCCAATTATACACACAAGTTTCTTCATTGACGAGGAAAAGAAAGTCGCCAT 968
Query 1009 CGGGTTTAATGACAATCGCAAAACAATCAACATCATTGGCGAGGCGGGGTACTTTAGAGA 1068
||||||||||||||||||||| |||| ||||||||||| ||||| || |||||||||||
Sbjct 969 TGGGTTTAATGACAATCGCAAA-CAATTAACATCATTGGAGAGGCTGGATACTTTAGAGA 1027
Query 1069 ATTGGATCTTGGAGAACATGCAGAACCATA 1098
|||||||||||||||||||||||| |||||
Sbjct 1028 ATTGGATCTTGGAGAACATGCAGAGCCATA 1057
Score = 479 bits (259), Expect = 2e-134
Identities = 350/392 (89%), Gaps = 13/392 (3%)
Strand=Plus/Plus
Query 1 ATGGCGACGATGATCTCTAATCTTCCAAGGGATTTGATGGAAGAGATTTTGTCTAGGGTT 60
||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1 ATGACGACGATGATCTCCAATCTTCCAAGGGATTTGATAGAAGAGATTTTGTCAAGGGTT 60
Query 61 CCCTTGAAATCTATGCGAGCAGTGCGATTAACTTGCAAAAATTGGCACACTTTATCCATA 120
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 61 CCCTTGAAATCTATGAGAGCAGTGCGATTAACTTGCAAAAATTGGAACACTTTATCCAGA 120
Query 121 ACCATAAGTGAGAGTTTAGCGAAGATGTACATTAGTAAAACAACAAGAG-AATCAAGAGA 179
|||||||||||||| ||| |||||||| | |||| |||| ||||||||| || |||||||
Sbjct 121 ACCATAAGTGAGAGCTTAACGAAGATGCAAATTACTAAATCAACAAGAGCAA-CAAGAGA 179
Query 180 AGGGGAGTCTACGATAATCACGTTGATGAATTACAAACTTTGTTTAACGAGTCTCGTCGT 239
|||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||
Sbjct 180 AGGGGAATCTACGATAATCATGTTGATGAATTACAAACTTTATTTAAAGAGTCTCGTTGT 239
Query 240 CGA---C---GTTGACCCATATATAGAGCAC-AAAGGTAAACTAACTTGCTTTAATCTTG 292
||| | || || ||||||| ||||| | ||||||||||| |||||| ||| |||||
Sbjct 240 CGATGACAACGTAGATCCATATACAGAGC-CTAAAGGTAAACTTACTTGCCTTACTCTTG 298
Query 293 AGCATCAAGTCAAGATATCTCAAGTCTTT-TACTATGAGGGTTTAATTTTTATGCGTATT 351
|||| |||||||||||||||||||||||| || | |||||||||| || |||||| | ||
Sbjct 299 AGCACCAAGTCAAGATATCTCAAGTCTTTCTA-TGTGAGGGTTTA-TTGTTATGCATCTT 356
Query 352 GAAAGACGATACAATTACTACTAGGCTTGTGG 383
||||||||||||||||||||||||||||||||
Sbjct 357 GAAAGACGATACAATTACTACTAGGCTTGTGG 388
Score = 134 bits (72), Expect = 2e-30
Identities = 94/104 (90%), Gaps = 4/104 (4%)
Strand=Plus/Plus
Query 1148 GAAACTGCACCAGGGAACATa-aaaaaaCATCAAAGCAGTAT-AGAAACACGTCTATTTG 1205
||| |||||| ||| |||| | |||||||||||||||||| | |||||||||||||||||
Sbjct 1060 GAACCTGCACGAGGCAACA-ACAAAAAACATCAAAGCAGT-TCAGAAACACGTCTATTTG 1117
Query 1206 ATCGAAACATGTTGAGACTTGTCGCATTTGAGAAGAAAGTATCC 1249
||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1118 ATCTAAACATGTTGAGACTTGTCGCATTTGAGAAGGCAGTATCC 1161
> Ahg934582 jgi|Araly1|934582|scaffold_402570.1
Length=1276
Score = 560 bits (303), Expect = 8e-159
Identities = 989/1298 (76%), Gaps = 135/1298 (10%)
Strand=Plus/Plus
Query 1 ATGGCGACGATGATCTCTAATCTTCCAAGGGATTTGATGGAAGAGATTTT-GTCTAGGGT 59
||| |||||||||||||||||||||||| || |||||| || |||||||| | ||||||
Sbjct 21 ATGACGACGATGATCTCTAATCTTCCAACGGTTTTGATAGAGGAGATTTTAAT-TAGGGT 79
Query 60 TCCCTTGAAATCTATGCGAGCAGTGCGATTAACTTGCAAAAATTGGCACACTTTATCCAT 119
||| ||||||||| || |||||||| ||||||||||||||| |||| ||||| |||||
Sbjct 80 TCCTTTGAAATCTTTGAGAGCAGTGAGATTAACTTGCAAAATTTGGAACACTCTATCC-- 137
Query 120 AACCATAAGTGA-GAG-TTTAGC-GAAGATGTACATTAGTAAAACAACAAGAG-AATCAA 175
| || ||| | ||| ||| | |||| |||||||| ||||| || ||| || || |||
Sbjct 138 -A--AT-AGT-AGGAGCTTT--CTGAAGTTGTACATTGGTAAACCAGCAACAGCAA-CAA 189
Query 176 GAGAAGGGGAGTCTACGATAATCACGTTGATGAATTACAAACTTTGTTTAACGA--GTC- 232
|||||| ||| |||| ||| || || ||||||||| | |||| || || || |||
Sbjct 190 GAGAAGAGGATTCTATGATGGTCGCGATGATGAATTTTGATCTTTATTCAATGAGGGTCG 249
Query 233 TCGTCGTCGACGTTGACCCATATATAGAGCACAAAGGTAAACTAACTTGCTTTAATCTTG 292
| || | ||||||||| |||| ||||| | ||| |||||| || | ||| ||||
Sbjct 250 TAGTTGACGACGTTGATCCATCTATAGCGTTTAAACGTAAAC---CTAG-TTT--CCTTG 303
Query 293 -AGCATCAAGTCAAGATATCTCAAGTCTTTTACTATGAGGGTTTAATTTTTATGCGTATT 351
|| | ||||||||| |||||||||||||| ||| ||||||||| ||| ||||| | ||
Sbjct 304 AAG-AACAAGTCAAGGTATCTCAAGTCTTTCACTGTGAGGGTTT-ATTGCTATGCATCTT 361
Query 352 GAAAGACGATACAATTACTACTAGGCTTGTGGTTTGGAATCCGTATTG-GGGGCAAACAA 410
|| | | |||| ||||| ||| |||||||||||||||||||||| |||| ||||||
Sbjct 362 -CAA-A-G--ACAA-TACTA--AGG-TTGTGGTTTGGAATCCGTATTGCGGGG-AAACAA 411
Query 411 GGCAGATCAAAACC-CGATATTCTCACCACGCATTCTCCGGAAGGGATAGTACGTACATG 469
|| |||| |||| ||| |||||| || ||| ||||| || | ||| |
Sbjct 412 GGTGGATC-GAACCAAGATTTTCTCA--TCG-----TCC--AAGGG--GGT-GGGACAGG 458
Query 470 TTCAATTACT-CTCTCGGATACGAGAATAA-GAATTCATGTCG-CAGCCACAAATTATTG 526
|||| ||| | |||| |||||| || |||| ||| || ||| | ||| ||||| |||
Sbjct 459 TTCAGTTA-TGCTCTAGGATACAAGGATAAGGAA-TCTTGT-GATAGCTTTAAATTCTTG 515
Query 527 AGGTTTATAGATTATCATT-GGAATTATCGCGGCC-TACACCAAtttttttGGTATGAAA 584
||||| ||||||||| || | || | || || | | |||||||||||||||||||
Sbjct 516 AGGTTCATAGATTAT--TTCTG-CTT-T-GCACCCGAAAATCAATTTTTTTGGTATGAAA 570
Query 585 TCTACGATTTTGACTCGGATTTATGGACAACTCTTGATGTCACTCCACACTGGTTTATAG 644
|||| ||||||||||| |||| ||||||||||||||||||||||||| |||||| ||||
Sbjct 571 TCTATGATTTTGACTCTGATTCATGGACAACTCTTGATGTCACTCCAAACTGGTGTATA- 629
Query 645 TTATTT-CTCAA-AGTGGTGTTTCCCTCAAGGGAAACACATACTGGTGTGCT-AGGAAGA 701
| ||| || || |||| || | ||||| |||||||| |||||||||||| |||| |
Sbjct 630 ATGTTTGCT-AACCTTGGTATTACTCTCAAAGGAAACACTTACTGGTGTGCTGGGGAA-A 687
Query 702 GG-A-GC-G--GCGGTTATAG-CGATCACATTATTTGTTTTGATTTTACTAGAGAGAGAT 755
|| | | | | | ||| | ||||||||| || |||||||||||||| || |||||||
Sbjct 688 GGAACTCAGAAGATGATATTGCCGATCACATAATCTGTTTTGATTTTACAAGCGAGAGAT 747
Query 756 TTGGACCGCTTTTGCCTTTGCCGTTTAGCTTTATTGATCGTCA-TCATTCATGTGTGATT 814
||||||||||||| ||| ||||| |||| | | |||| | | | || || ||||| |
Sbjct 748 TTGGACCGCTTTTACCTCTGCCGACTAGCGTCAGGGATCATGAGT-ATGAATATGTGACT 806
Query 815 TTATCTTGTGTTAGTGAAGAGAAGCTTGCAGTTTTATTTCAGTACAA-GGACCACTACTA 873
|||||||||||||| |||||||||||||||| |||||||||| |||| | | || | |
Sbjct 807 TTATCTTGTGTTAGGGAAGAGAAGCTTGCAGCTTTATTTCAGCACAACGAATCA--A--A 862
Query 874 TAAAAATGTAG-TTGAAATATGGATTACAGCTAAGCTTGAGGCCGAAATGGTGTCGTGGA 932
| ||| || |||| |||||||||||| || || || | |||||||||||||||||||
Sbjct 863 TCCGTATG-AGCTTGAGATATGGATTACAACTGAGATTAATGCCGAAATGGTGTCGTGGA 921
Query 933 GCAAGTTCTTGA-GAATAAATACGGGGCC-A--ATT-A--TAC-AC--AC--G--A-G-T 976
|||||||||||| || | |||| || || | || | | | || | | | | |
Sbjct 922 GCAAGTTCTTGATGA-TGGATACCGGACCTAGGATAGAGGTTCCACTTATATGGGAAGGT 980
Query 977 TTCTTCATTAACGAGGA-AA-AGAAAGTCGCCATCGGGTTT--A--ATGA---CAATCGC 1027
||||||||| ||||||| || ||||| |||||| |||||| | | || || |||
Sbjct 981 TTCTTCATTGACGAGGAGAAGAGAAA--CGCCAT-GGGTTTTGACGAAGAGTTCAGTCGT 1037
Query 1028 AAAACAATCAACATCATTGGCGAGGCGGGGTACTTTAGAGAATTGGATCTTGGAG-A-AC 1085
|||||| | | ||||||||| ||||| || ||| | ||| |||||||| |||||| | ||
Sbjct 1038 AAAACATTTATCATCATTGGAGAGGCTGGATACGTAAGAAAATTGGATATTGGAGTAGAC 1097
Query 1086 ATGCAGAACCATATCGTAGGCGACATGTTTTCTCTTATGTTCCAAGTTCGGTCCAAATCA 1145
|| ||| | ||| | | | | || | ||||||||||||||||| |||||||||||
Sbjct 1098 AT--AGAT---TGTCG-AC-CAAAA-GTGTGCTCTTATGTTCCAAGTTTGGTCCAAATCA 1149
Query 1146 AGGAAAC-TGCACCAGGGAACATaaa-aaaaCATCAAAGCAG-TATAGAAACACGTCTAT 1202
|| |||| |||| ||| || | || |||| | |||||||| | ||||||| ||||||
Sbjct 1150 AG-AAACCTGCAGGAGG-AA-A-AAGGAAAAGA-CAAAGCAGCT-TAGAAACGGGTCTAT 1203
Query 1203 TTGATCGAAACATGTTGAGACTTGTCGCATTTGAGAAG 1240
|||| | ||||||||||||||||| |||||||| |||
Sbjct 1204 TTGAGCAAAACATGTTGAGACTTGAAGCATTTGAAAAG 1241
> Ahg345622 jgi|Araly1|345622|fgenesh1_pg.C_scaffold_4001964
Length=1383
Score = 444 bits (240), Expect = 8e-124
Identities = 753/982 (77%), Gaps = 109/982 (11%)
Strand=Plus/Plus
Query 1 ATGGCGACGATGATCTCTAATCTTCCAAGGGATTTGATGGAAGAGATT-TTGTCTAGGGT 59
||| |||| |||||||| |||||||||| ||||||||| || || ||| || || ||| |
Sbjct 1 ATGACGACAATGATCTCCAATCTTCCAAAGGATTTGATCGAGGAAATTCTT-TCGAGGCT 59
Query 60 TCCCTTGAAATCTATGCGAGCAGTGCGATTAACTTGCAAAAATTGGCACACTTTATCCAT 119
| ||| |||||||||| ||||||| ||||||||||||||| |||| ||| || | ||
Sbjct 60 TTCCTGGAAATCTATGAAAGCAGTGAGATTAACTTGCAAAAGTTGGAACA-ATT-T--AT 115
Query 120 AACCATAAGTGAGAGTTTAGCGAAGATGTACATTAGTAAAACAACAAGAGAATCAAGAGA 179
|| || | || | | ||||||||||| ||||| ||||||||| ||| |
Sbjct 116 --CC--AA---A-AG--T---G-AGATGTACATTGGTAAATCAACAAGAG----AAG-G- 155
Query 180 AGGGGAGTCTACGATAATCACGTTGATGAATTACAAACTTTGTTTAACGAGTCT-CGTCG 238
| |||||| ||| ||| || ||||| | |||| |||| | ||| ||| || |||||
Sbjct 156 A---CAGTCTATGATGATCGCGATGATGCCTCACAATCTTTATCTAATGAG-CTGCGTCG 211
Query 239 TCGACGTTGACCCATATATAGAGCACAAAGGTAAACTAACTT-GCTTTAATCTTGAGC-A 296
|||||||||| |||| ||||||||| |||||| | ||||| | ||| ||| | | |
Sbjct 212 TCGACGTTGATCCATCTATAGAGCATAAAGGT---C-AACTTAG-TTT--CCTTCA-CAA 263
Query 297 TCAAGTCAAG-ATATCTCAAGTCTTTTACTATGAGGGTTTAATTTTTATGCGTATTGAAA 355
|||||| || ||||||| ||||||| ||||||||||||||| |||||||| | ||||||
Sbjct 264 TCAAGT-TAGCATATCTCGAGTCTTTCACTATGAGGGTTTAA-TTTTATGCATCTTGAAA 321
Query 356 GACGATACAATTACTACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCAAACAAGGCAG 415
|||| | ||||||| ||||||||| ||||||||||| ||| ||||||||| |
Sbjct 322 GACG-------T--TACTAGGATTGTGGTTTTGAATCCGTATTTGGGCCAAACAAGGTGG 372
Query 416 ATCAAAAC-CCGATATTCTCACCACGCATTCTCCGGAAGGGATAGTACGTACATGTTCAA 474
||| |||| | ||| |||||| | | || | || ||| | | |||||||||
Sbjct 373 ATC-AAACTCAGATTTTCTCA-C-TG---TCAAC--AA-AGAT--T-TG-ACATGTTCAG 419
Query 475 TTACT-CTCTCGGATACGAGAAT-AAGAATTCATGTCGCAGCCACAAATTATTGAGGTTT 532
||| | ||||||| |||||| || ||||| || ||||| || ||||| |||||||||
Sbjct 420 TTA-TGCTCTCGGTTACGAGCATAAAGAA-TCTTGTCGTAGTTTTAAATTCTTGAGGTTT 477
Query 533 ATAGATTATCATTGGAATTATCGCGGCCTACAC-CAAtttttttGGTATGAAATCTACGA 591
||||||||| || | | || || | || |||||||||||||||||||||||||
Sbjct 478 ATAGATTAT--TT-CTA-CAAAGCACCCGAAACGAAATTTTTTTGGTATGAAATCTACGA 533
Query 592 TTTTGACTC-GGATTTATGGACAACTCTTGATGTCACTCCACACTGGTTTATAGTTATT- 649
|||||| || || || ||||| |||||||||||||||||||||||||||||| | ||
Sbjct 534 TTTTGATTCTGG-TTCATGGAGTACTCTTGATGTCACTCCACACTGGTTTATA-TC-TTG 590
Query 650 TCTCAAA-G-TGGTGTTTCCCTCAAGGGAAACACATACTGGTGTGCTAG-GAAGAGGAGC 706
| |||| | | | ||||| || |||||||| || |||||||||||||| ||| |||| |
Sbjct 591 T-TCAAGCGATAGCGTTTCTCTTAAGGGAAATACCTACTGGTGTGCTAGAGAA-AGGACC 648
Query 707 G--G----CGGT-TATAGCGATCACATTATTTGTTTTGATTTTACTAGAGAGAGATTTGG 759
| |||| | |||||||||| || |||||||||||||| ||||||||||||||
Sbjct 649 CCTGAAAACGGTCTCC-GCGATCACATAATCTGTTTTGATTTTACAAGAGAGAGATTTGG 707
Query 760 ACCGCTTTTGCCTTTGCCGTTTAGCTTTATTGATCGTCA-TCAT--TCATGTGTGATTTT 816
|||||| | ||| ||||| ||| | ||| ||||| | | | || | || ||||| |||
Sbjct 708 GCCGCTTCTACCTCTGCCGGTTAACGTTACTGATCATGACT-ATGGT-AT-TGTGACTTT 764
Query 817 ATCTTGTGTTAGTGAAGAGAAGCTTGCAGTTTTATTTCAGTACAAGG-ACCACTACTATA 875
||||||||||| ||||||||| |||||| ||||||||| || | | | || | | |
Sbjct 765 ATCTTGTGTTAAAGAAGAGAAGATTGCAGCCTTATTTCAGCACTACGCATCA-T--T-TG 820
Query 876 AAAATGTAGTT-GAAATATGGATTAC-AGCTAAGCTTGAGGCCGAAATGGTGTCGTGGAG 933
| || |||| |||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 821 ATTCTG-AGTTTGAAATATGGATTACGA-CTAAGATTGAGGCCGAAATGGTGTCGTGGAG 878
Query 934 CAAGTTCTTGAGAATAAATACG 955
||||||||||||||| |||||
Sbjct 879 CAAGTTCTTGAGAATGGATACG 900
> Ahg345624 jgi|Araly1|345624|fgenesh1_pg.C_scaffold_4001966
Length=2085
Score = 355 bits (192), Expect = 4e-97
Identities = 680/899 (76%), Gaps = 100/899 (11%)
Strand=Plus/Plus
Query 154 AGTAAAACAACAAGA-GAATCAAGAGAAGGGGAGTCTACGAT-A--ATCACGTTGATGAA 209
|||||| ||||| | || |||||||||||||| ||| ||| | ||| | |||||
Sbjct 121 AGTAAAGTAACAACACCAA-CAAGAGAAGGGGAGACTATGATGATCTTCAGGATGATGCC 179
Query 210 TTACAAACTTTGTTTAACGAGTC-TCGTCGTCGACGTTGACCCATATATAGAGCACAAAG 268
| ||| ||||||||| ||| | | ||||||| ||||| |||| |||||||| ||||
Sbjct 180 TGACAGTTTTTGTTTAATGAG-CGGCATCGTCGATGTTGATCCATCTATAGAGCGTAAAG 238
Query 269 GTAAACTAACTT-GCTTTAATCTTGAGCATCAAGTCAAGATATCTCAAGTCTTT--TACT 325
|| | ||||| | ||| ||| | || ||||| || | | || || ||| |||
Sbjct 239 GT---C-AACTTAG-TTT--CCTTTA-CA--AAGTC-AG-TGTATCTAGAATTTACCACT 286
Query 326 ATGAGGGTTTAATTTTTATGCGTATTGAAAGACGATACAATTACTACTAGGCTTGTGGTT 385
|||||||||||| |||||||| ||||||||||| ||| | |||| || |||||
Sbjct 287 ATGAGGGTTTAA-TTTTATGCAAATTGAAAGACG------TTA--A-TAGGGTTATGGTT 336
Query 386 TGGAATCCGTATTGGGGGCAAACAAGGCAGATCAAAACC-C-GATATTCTCACCACGCAT 443
|||||||| |||| ||||||||||||| |||| |||| | | |||||||| | | ||
Sbjct 337 TGGAATCCCTATTTGGGGCAAACAAGGTGGATC--AACCTCAGGTATTCTCA-C-CTCA- 391
Query 444 TCTCCGGAAGGGATAGTACGTACATGTTCAATTACT-CTCTCGGATACGAGAATAA-GAA 501
| || |||| | | ||| || || ||| | |||||||||||||| |||| |||
Sbjct 392 --T---AAACGGAT--T-C-AACAGGTACAGTTA-TGCTCTCGGATACGAGGATAAGGAA 441
Query 502 TTCATGTCGCAGCCACAAATTATTGAGGTTTATAGATTATCATTGGAATT--ATCGCGGC 559
|| || || ||| ||||| ||||||||| |||||||| || || || || |
Sbjct 442 -TCTTGCCGTAGCGTTAAATTGTTGAGGTTTTTAGATTAT--TT---CTTCCAT-GCACC 494
Query 560 CTACAC-CAAtttttttGGTATGAAATCTACGATTTTGACTC-GGATTTATGGACAACTC 617
| | || |||||||||||||||||||||||||||||||| || || |||||||| ||| |
Sbjct 495 CGAAACACAATTTTTTTGGTATGAAATCTACGATTTTGATTCTGG-TTTATGGAAAACCC 553
Query 618 TTGATGTCACTCCACACTGGTTTATAGTTATT-TCTCAAAG---TGGTGTTTCCCTCAAG 673
|||||||||||||| ||||| |||| |||| | || ||| | | ||||| || |||
Sbjct 554 TTGATGTCACTCCAAACTGGGGTATA--TATTGT-TC-AAGCCCTAGCGTTTCTCTTAAG 609
Query 674 GGAAACACATACTGGTGTGCTAGGAAGAGGAG--C-GGCGGTTATA-GCGATCACATTAT 729
|| ||||| |||||||||||||| || ||||| | | |||| || | ||||| || ||
Sbjct 610 GGTAACACTTACTGGTGTGCTAGTAAAAGGAGCTCAGAAGGTTGTATG-GATCATATAAT 668
Query 730 TTGTTTTGATTTTACTAGAGAGAGATTTGGACCGCTTTTGCCTTTGCCGTTTAGCTTTAT 789
|||||||||||||| | |||||| ||||| |||||| | ||| |||||| |||| |||
Sbjct 669 ATGTTTTGATTTTACAAAAGAGAGGTTTGGGCCGCTTCTACCTCTGCCGTCTAGCGTTAG 728
Query 790 TGATCGT-CATCAT-TCATGTGTGATTTTATCTTGTGTTAGTGAAGAGAAGCTTGCAGTT 847
|||||| || || | || ||||| |||||||||||||| |||||||||||||||| |
Sbjct 729 GGATCGTAAAT-ATAT-ATATGTGAATTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCT 786
Query 848 TTATTTCAGTACAAGGACCACT-ACT-ATA-AAAATGTA-GTTGAAATATGGATTACAG- 902
||||| ||| | | || || | | ||| || | || |||| ||||||||||| |
Sbjct 787 TTATTCCAG--C---G-CC-CTGAATCATACGAACTTTATTTTGAGATATGGATTAC-GA 838
Query 903 CTAAGCTTGAGGCCGAAATGGTGTCGTGGAGCAAGTTCTTGAGAATAAATACGGGGCC-A 961
||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 839 CTAAGATTGAGGCCGAAATGGTGTCGTGGAGCAAGTTCTTGAGAATCGATACGGGACCTA 898
Query 962 AT-TATACA--C-ACG-AGTTTCTTCATTAACGAGGAAAAGAAAGTCGCCATCGGGTTT 1015
| || | | | | |||||||| ||| ||||||| ||||||||| ||| ||||||
Sbjct 899 AGGTAAATGTTCCAGGTAGTTTCTTGATTGACGAGGAGAAGAAAGTCTTCAT-GGGTTT 956
Score = 187 bits (101), Expect = 2e-46
Identities = 232/293 (79%), Gaps = 18/293 (6%)
Strand=Plus/Plus
Query 671 AAGGGAAACACATACTGGTGTGC-TAGGAAGAGGAGC---GGCGGTTA-TAGCGATCACA 725
||||||||||| |||||||| || || ||| |||||| |||| | ||| |||| |
Sbjct 1372 AAGGGAAACACTTACTGGTGCGCTTATGAA-AGGAGCTTAAACGGTCACGAGC-ATCATA 1429
Query 726 TTATTTGTTTTGATTTTACTAGAGAGAGATTTGGACCGCTTTTGCCTTTGCCGTTTAGCT 785
| || |||||||||||||| | |||||| |||||||||||| ||||| |||||| ||||
Sbjct 1430 TAATATGTTTTGATTTTACAAAAGAGAGGTTTGGACCGCTTCTGCCTCTGCCGTCTAGCA 1489
Query 786 TTATTGATCGT-CATCATTCATGT-GTGATTTTATCTTGTGTTAGTGAAGAGAAGCTTGC 843
||| |||| | || | | | | || | |||||| ||||||| ||||||||| ||||
Sbjct 1490 TTACGGATCATGAAT-A-TAAAATCGTAACTTTATCGTGTGTTAAAGAAGAGAAGATTGC 1547
Query 844 AGTTTTATTTCAGTACAAGGACCACTAC-TATAAAAATGTAG-TTGAAATATGGATTACA 901
|| ||||||| | |||||| || | | ||| | | || || |||| ||||||||||||
Sbjct 1548 AGCTTTATTTTGGCACAAGG--CA-T-CATATGATACTG-AGATTGAGATATGGATTACA 1602
Query 902 GCTAAGCTTGAGGCCGAAATGGTGTCGTGGAGCAAGTTCTTGAGAATAAATAC 954
||||| |||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 1603 ACTAAGATTGAAGCCGAAATGGTGTCGTGGAGCAAGTTCTTGAGATTTAATAC 1655
> Ahg947570 jgi|Araly1|947570|scaffold_703799.1
Length=1097
Score = 281 bits (152), Expect = 7e-75
Identities = 355/447 (79%), Gaps = 37/447 (8%)
Strand=Plus/Plus
Query 577 GTATGAAATCTACGATTTTGACTCGGA-TTTATGGACAACTCTTGATGTCACTCCACACT 635
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 464 GTATGAAATCTACGATTTTGACTC-TAGTTTATGGACAACTCTTGATGTCACTCCACACT 522
Query 636 GGTTTATAGTTATTTCTCAAAG-T--GGTGTTTCCCTCAAGGGAAACACATACTGGTGTG 692
||| ||| | || ||| | | | || ||||| || ||||||||||| |||||| ||
Sbjct 523 GGTGGATA-TC-TTGCTCTA-GCTATGGCGTTTCTCTTAAGGGAAACACTTACTGGCCTG 579
Query 693 CTAGGAAGAGGAGCGG-CG-G-T-TATAGCGATCACATTATTTGTTTTGATTTTACTAGA 748
| | || |||||| || | | | | ||||||||| || |||||||||||||| |||
Sbjct 580 CGA--AA-AGGAGCTCACGTGGTCTCTT-CGATCACATAATCTGTTTTGATTTTACAAGA 635
Query 749 GAGAGATTT-GGACCGCTTTTGCCTTTGCCGTTTAGCTTTATTGATCGTC-ATCATTCAT 806
||||| ||| || |||||| | |||||||||||| || || |||||| || || |||
Sbjct 636 GAGAG-TTTCGGGCCGCTTCTACCTTTGCCGTTTGGCGCTACGGATCGTGGAT-ATCCAT 693
Query 807 GTGTGATTTTATCTTGTGTTAGTGAAGAGAAGCTTGCAGTTTTATTTCAGTACA-AGGAC 865
||||| |||||||||||||| |||||||||||||||| |||||||||| | | | ||
Sbjct 694 ATGTGACTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCA-ATACTAC 752
Query 866 -CACTACTATAAA----AATGT-AG-TTGAAATATGGATTAC-AGCTAAGCTTGAGGCCG 917
|| |||| ||| ||| | || |||| ||||||||||| | ||||| |||| || |
Sbjct 753 TCA-TACTGCAAATGTGAATATGAGATTGATATATGGATTACGA-CTAAGATTGAAGCTG 810
Query 918 AAATGGTGTCGTGGAGCAAGTTCTTGAGAATAAATACGGGGCC-AAT-TATA-CACACG- 973
||||||||||||||||||||||||||||||| |||||| || ||| |||| | ||
Sbjct 811 AAATGGTGTCGTGGAGCAAGTTCTTGAGAATGAATACGAAACCTAATATATATC-CAATT 869
Query 974 AGTTTCTTCATTAACGAGGAAAAGAAA 1000
| |||| ||||| ||||||| ||||||
Sbjct 870 ATTTTCCTCATTGACGAGGAGAAGAAA 896
> Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935
Length=903
Score = 200 bits (108), Expect = 2e-50
Identities = 461/619 (74%), Gaps = 74/619 (12%)
Strand=Plus/Plus
Query 370 TACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCAAACAAGGCAGATCAAAACCC-GAT 428
||||||||||||||||||||||||||||||||||||||||||| |||| || || |||
Sbjct 258 TACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCAAACAAGGTGGATCGAA-CCTAGAT 316
Query 429 ATTCTCACCACGCATTCTCCGGAAGGGATAGTACGTACATGTTCAATTACTCTCTCGGAT 488
||||||||||| | | || ||| | || | | | ||||| |||| |||| ||||
Sbjct 317 ATTCTCACCAC-C-TAATC-GGATGTGA-A--A-G-----GTTCACTTACGCTCTTGGAT 364
Query 489 ACGAGAATAAGAATTCATGTCGCAGCCACAAATTATTGAGGTTTATAGATTATCA-TTGG 547
||| | |||| || || ||||| ||||||||||||||||||||||||||| || | ||
Sbjct 365 ACGTGGATAATAAGTCTTGTCGTAGCCACAAATTATTGAGGTTTATAGATGATTACTTC- 423
Query 548 AATTATCGCGGCCTACACCAAtttttttGGTATGAAATCTACGATTTTGACTC-GGATTT 606
| || | | ||| | ||| |||||||||||||||||||| || || || |||
Sbjct 424 --T-AT-G-GACCTG-AG---TTTGAATGGTATGAAATCTACGATTTCGAGTCTGG-TTT 473
Query 607 ATGGACAACTCTTGATGTCACTCCACACTGGTTTATA--G-TTATTT-CTCAAAGTGGTG 662
|||| | ||||||||||||||||||||||||| |||| | || | | || |||
Sbjct 474 ATGGGCGACTCTTGATGTCACTCCACACTGGTGTATATCGCTTGGTAGC-CA---TGGAA 529
Query 663 TTTCCCTCAAGGGAAACACATACTGGTGTGCTAGGAAGAGGAGCG---GC---GG-TT-A 714
|||| || ||||||||||| || ||| |||||| || || | || || || || |
Sbjct 530 TTTCTCTTAAGGGAAACACTTATTGGAGTGCTATTAAAAGAAACGCACGCCACGGATTGA 589
Query 715 ---TAGC-GATCA---C-AT-TATT-TGTTTTGATTTTACTAGAGAGAGATTTGGACCGC 764
|| | ||||| | | || | |||||||||||||| |||||||||||||||||||
Sbjct 590 CCATATCTGATCATGACCACATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGC 649
Query 765 TTTTGCCTTTGCCGTTTAGCTTT-ATTGATCGTCATCATTCATGTGTGATTTTATCTTGT 823
|| ||||| | ||||| ||| || | | || | || || ||||| | ||| | ||||
Sbjct 650 TTCTGCCTCTACCGTTAAGCGTTGAGT-AT--T-ATGGTT-ATGTG--ACTTTGTTTTGT 702
Query 824 GTTAGTGAAGAGAAGCTTGCAGTTTTATTTCAGTACAAGGACCACTACTATAAAA-ATGT 882
||||| |||||||||||||| | |||| || |||| || || | || || |
Sbjct 703 GTTAGAGAAGAGAAGCTTGCGGCTTTA---CA--ACAAA-ACAACCGTTGGAATCCATAT 756
Query 883 A-GTTGAA-ATATGGATTACAGCTAAGCTTGAGGCC-GAA-ATGGTGTCGTGGAGCAAGT 938
| ||| || |||||||||||| |||| ||||| | ||| | ||||||||||||||| |
Sbjct 757 AAGTTTAATATATGGATTACAACTAATATTGAG-CATGAACA-GGTGTCGTGGAGCAAAT 814
Query 939 TCTTGAGAATAAATACGGG 957
|||||| | || ||| |||
Sbjct 815 TCTTGACAGTAGATATGGG 833
> Ahg317222 jgi|Araly1|317222|fgenesh1_pm.C_scaffold_3000238
Length=639
Score = 91.6 bits (49), Expect = 1e-17
Identities = 143/185 (77%), Gaps = 20/185 (11%)
Strand=Plus/Plus
Query 362 ACAATTACTACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCAAACAAGGCAGATCAAA 421
|||| || |||||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 107 ACAA-TAATACTAGGCTTGTGGTTTGGAATCCGTATTGCGGGCAAACAAGGTTGATCGAA 165
Query 422 ACCC-GATATTCTCACCACGCATTCTCCG-GAAGGGATAGTACGTACATGTTCAATTACT 479
| | | |||||| || | | ||||| ||||| || || | ||| || || ||||
Sbjct 166 -CTCAGGTATTCTTAC-A----T-CTCCGTGAAGGAAT-GT--G-ACACGTGCAGTTACG 214
Query 480 CTCTCGGATACG---AGAATAAGAAT---TCATGTCGCAGCCACAAATTATTGAGGTTTA 533
|| ||||||||| |||| ||||| || ||||| | ||||||| | ||||||||||
Sbjct 215 CTTTCGGATACGTGGAGAAGAAGAACAAATCTTGTCGTAACCACAAAATCTTGAGGTTTA 274
Query 534 TAGAT 538
||||
Sbjct 275 CAGAT 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46891187910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5