BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48630.1
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474002 jgi|Araly1|474002|fgenesh2_kg.1__3956__AT1G48630.1 1775 0.0
Ahg920734 jgi|Araly1|920734|scaffold_102015.1 712 0.0
> Ahg474002 jgi|Araly1|474002|fgenesh2_kg.1__3956__AT1G48630.1
Length=1170
Score = 1775 bits (961), Expect = 0.0
Identities = 1123/1197 (94%), Gaps = 27/1197 (2%)
Strand=Plus/Plus
Query 48 AAACCCTGAACCATGGCTGAAGGACTCGTGTTGAAAGGCACAATGTGTGCCCACACTGAT 107
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACCCTAAACCATGGCTGAAGGACTCGTGTTGAAAGGCACAATGTGTGCCCACACTGAC 60
Query 108 ATGGTCACCGCCATTGCTACACCGGTCGATAACTCCGACGTGATTGTAACTTCGTCGCGT 167
|||||||||||||| || |||||||||||||| |||||||| || || || |||||||||
Sbjct 61 ATGGTCACCGCCATCGCCACACCGGTCGATAATTCCGACGTTATCGTGACCTCGTCGCGT 120
Query 168 GACAAATCAATCATCCTCTGGAAACTCACAAAGGAAGACAAGTCATACGGTGTTGCTCAG 227
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GACAAATCAATCATCCTCTGGAAACTCACAAAGGAAGACAAGTCTTACGGTGTTGCTCAG 180
Query 228 CGGAGGATGACTGGTCACTCTCACTTCGTTCAAGACGTTGTTCTCTCCTCCGATGGACAA 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGGAGGATGACTGGTCACTCTCACTTCGTTCAAGACGTTGTTCTCTCCTCCGATGGACAA 240
Query 288 TTCGCTCTCTCCGGATCTTGGGACGGTGAGCTTCGTCTCTGGGATCTCGCTACCGGAGAA 347
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 241 TTCGCTCTCTCCGGATCCTGGGACGGTGAGCTTCGTCTCTGGGATCTCGCCACCGGTGAA 300
Query 348 TCTACTCGTCGTTTCGTTGGTCACACGAAAGATGTTCTCTCTGTTGCTTTCTCTACCGAT 407
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 TCAACTCGTCGTTTCGTTGGTCACACGAAAGATGTTCTCTCTGTTGCTTTCTCTACTGAT 360
Query 408 AACCGTCAGATCGTCTCTGCTTCTCGTGATCGTACGATTAAGCTTTGGAACACGCTTGGT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 AACCGTCAGATCGTCTCTGCTTCTCGTGATCGTACGATTAAGCTTTGGAACACACTTGGT 420
Query 468 GAGTGTAAGTATACCATCTCTGAAGCTGATGGTCACAAGGAATGGGTTAGTTGTGTTAGG 527
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGTGTAAGTATACAATCTCTGAAGCTGATGGTCACAAGGAATGGGTTAGTTGTGTTAGG 480
Query 528 TTTAGTCCTAATACTCTTGTGCCAACTATTGTATCTGCTTCTTGGGATAAAACTGTGAAG 587
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 TTTAGTCCTAATACTCTTGTGCCAACCATTGTATCTGCTTCTTGGGATAAAACTGTGAAA 540
Query 588 GTCTGGAATCTTCAGAATTGTAAGCTTAGGAACACTCTTGCTGGTCACTCTGGTTACTTG 647
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGTGGAATCTCCAGAATTGTAAGCTTAGGAACACTCTTGCTGGTCACTCTGGTTACTTG 600
Query 648 AACACTGTGGCTGTGTCACCTGATGGTTCGTTGTGTGCCAGTGGTGGCAAAGATGGTGTG 707
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 601 AACACTGTGGCTGTGTCACCTGATGGTTCGTTATGTGCCAGTGGTGGGAAAGATGGTGTG 660
Query 708 ATCTTGCTTTGGGATTTGGCTGAAGGGAAGAAGTTGTATTCTCTTGAAGCTGGCTCTATT 767
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 ATCTTGCTTTGGGATTTGGCTGAAGGGAAGAAGTTGTATTCTCTTGAGGCTGGCTCTATT 720
Query 768 ATTCATTCACTTTGCTTCAGTCCCAATAGGTACTGGTTGTGTGCAGCAACAGAGAATAGC 827
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 721 ATTCATTCACTTTGCTTCAGTCCCAATAGGTACTGGCTCTGTGCAGCAACAGAGAATAGC 780
Query 828 ATTAGGATTTGGGATCTCGAGAGTAAGTCTGTTGTTGAGGATTTGAAGGTTGATCTTAAG 887
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 781 ATTAGGATTTGGGATCTTGAGAGTAAGTGTGTTGTTGAGGATTTGAAGGTTGATCTTAAG 840
Query 888 GCTGAGGCTGAAAAGACTGATGGTTCTACTGGAATCGGAAACAAGACCAAGGTGATCTAC 947
|||||||||| ||| |||||| | ||||||||| |||||||||||| |||||||| |||
Sbjct 841 ACTGAGGCTGAGAAGTCTGATGCTACTACTGGAACCGGAAACAAGACTAAGGTGATTTAC 900
Query 948 TGCACAAGCTTGAACTGGAGTGCAGATGGAAACACTTTGTTCAGTGGATACACTGATGGA 1007
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 901 TGCACAAGCTTGAACTGGAGTGCAGATGGAAGCACTTTGTTCAGTGGCTACACTGATGGA 960
Query 1008 GTTATCAGGGTTTGGGGTATTGGTCGTTACTAGAGAGACAAGAAGTTTCTTTATTCTCTC 1067
||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||
Sbjct 961 GTTATCAGGGTTTGGGGTATTGGTCGTTATTAGAGAGACTAGAAGTTTCTTTAATCTCTC 1020
Query 1068 CAAATTTTTCCATCGACTCTAAAGTCTTCTCTTCTGAATTAGTGTTTTGAGGATTTATTT 1127
|||| || | | |||||| |||||||||||||||||||| ||||
Sbjct 1021 CAAA-------AT----T-T----TCTTCT-----GAATTAGTGTTTTGAGGATT-ATTT 1058
Query 1128 TTTGTTCTTTTCTATTTTCAGAATCCACAAATGTGATATTTTGATACATTGATTTTGTTT 1187
|||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1059 TTTGTTCTTT-CTATTTTCAGAATCCACAAACGTGATATTTTGATCCATTGATTTTGTTT 1117
Query 1188 CATATTTGTTTTCTTACACTGAGTCTGAGTACACGGCGTAGAATCTGATTTGAAGTT 1244
|||| |||||| ||||||| | |||||||||| |||||| |||||||||||||||
Sbjct 1118 CATAATTGTTTGCTTACAC--A--CTGAGTACACCGCGTAGCATCTGATTTGAAGTT 1170
> Ahg920734 jgi|Araly1|920734|scaffold_102015.1
Length=1101
Score = 712 bits (385), Expect = 0.0
Identities = 798/997 (80%), Gaps = 29/997 (3%)
Strand=Plus/Plus
Query 60 ATGGCTGAAGGACTCGTGTTGAAAGGCACAATGTGTGCCCACACTGATATGGTCACCGCC 119
||||| ||||||||||| ||||||||||| ||| |||| |||||||| ||||| || ||
Sbjct 98 ATGGCGGAAGGACTCGTTTTGAAAGGCACCATGCGTGCACACACTGACATGGTGACGGCA 157
Query 120 ATTGCTACACCGGTCGATAACTCCGACGTGATTGTAACTTCGTCGCGTGACAAATCAATC 179
|| || || || |||||||| | ||| | || || | | || || |||||||| |||
Sbjct 158 ATCGCCACCCCAATCGATAACGCAGACATCATCGTCTCAGCTTCCCGCGACAAATCCATC 217
Query 180 ATCCTCTGGAAACTCACAAAGGAAGAC-AAGTCATACGGTGTTGCTCAGCGGAGGATGAC 238
|| | ||||||||||| ||||| ||| ||| | |||||||| |||||| || | | ||
Sbjct 218 ATTTTGTGGAAACTCACCAAGGACGACAAAG-CCTACGGTGTAGCTCAGAGGCGTCTCAC 276
Query 239 TGGTCACTCTCACTTCGTTCAAGACGTTGTTCTCTCCTCCGATGGACAATTCGCTCTCTC 298
||||||||||||||||||| | || ||||||||||||||||||||||||||||| || ||
Sbjct 277 TGGTCACTCTCACTTCGTTGAGGATGTTGTTCTCTCCTCCGATGGACAATTCGCGCTTTC 336
Query 299 CGG-ATCTTGGGACGGTGAGCTTCGTCTCTGGGATCTCGCTACCGGAGAATCTACTCGTC 357
||| | || ||||||| ||||| ||||| |||||||||||| | || | || ||||||
Sbjct 337 CGGTAGCT-GGGACGGCGAGCTCCGTCTTTGGGATCTCGCTGCTGGTGTCTCCACTCGTA 395
Query 358 GTTTCGTTGGTCACACGAAAGATGTTCTCTCTGTTGCTTTCTCTAC-CGATAACCGTCAG 416
| |||||||| ||||| || || || ||||| || || ||||| || ||| |||||||||
Sbjct 396 GATTCGTTGGACACACCAAGGACGTGCTCTCCGTCGCATTCTC-ACTCGACAACCGTCAG 454
Query 417 ATCGTCTCTGCTTCTCGTGATCGTACGATTAAGCTTTGGAACACGCTTGGTGAGTGTAAG 476
||||||||||| |||||||| |||||||| ||||| |||||||| || |||||||| |||
Sbjct 455 ATCGTCTCTGCGTCTCGTGACCGTACGATCAAGCTATGGAACACTCTAGGTGAGTGCAAG 514
Query 477 TATACCATCTCTGAAGCTGATG-GTCACAA-G-GAATGGGTTAGTTGTGTTAGGTTTAGT 533
|| || ||||| |||| || || | ||| | || |||||||| || || || || ||
Sbjct 515 TACACGATCTCAGAAGGTGGTGAGGGACACCGTGATTGGGTTAGCTGCGTCAGATTCAGC 574
Query 534 CCTAATACTCTTGTGCCAACTATTGTATCTGCTTCTTGGGATAAAACTGTGAAGGTCTGG 593
|| || ||||| ||| || ||||| || ||||| ||||| ||||| ||||| || |||
Sbjct 575 CCCAACACTCTCCAGCCGACGATTGTGTCAGCTTCGTGGGACAAAACCGTGAAAGTGTGG 634
Query 594 AATCT-TCAGAATTGTAAGCTTAGGAAC-ACTCTTGCTGGTCACTCTGGTTACTTGAACA 651
|| || || ||| || ||||| || | | ||||||||||||||| | || ||| ||| ||
Sbjct 635 AACCTCTC-GAACTGCAAGCTCAG-ATCGACTCTTGCTGGTCACACCGGATACGTGAGCA 692
Query 652 CTGTGGCTGTGTCACCTGATGGTTCG-TTGTGTGCCAGTGGTGGCAAAGATGGTGTGATC 710
| |||||||| |||||||||||||| || ||||| ||||| |||||||| |||||| |
Sbjct 693 CGGTGGCTGTATCACCTGATGGTTCTCTT-TGTGCAAGTGGAGGCAAAGACGGTGTGGTT 751
Query 711 TTGCTTTGGGATTTGGCTGAAGGGAAGAAG-TTGTATTCTCTTGAAGCTGGCTCTATTAT 769
|||||||||||||||||||| ||||||||| || || |||||||||||| |||| | ||
Sbjct 752 TTGCTTTGGGATTTGGCTGAGGGGAAGAAGCTT-TACTCTCTTGAAGCTAACTCTGTGAT 810
Query 770 TCATTCACTTTGCTTCAGTCCCAATAGGTACTGGTTGTGTGCAGCAACAGAGA-ATAGC- 827
||| | ||||||||||||||||| ||||||||| | ||||| ||||| || | | ||
Sbjct 811 CCATGCTCTTTGCTTCAGTCCCAACAGGTACTGGCTCTGTGCTGCAACTGA-ACA-AGGT 868
Query 828 ATTAGGATTTGGGATCTCGAGAGTAAGT-CTGTTGTTGAGGATTTGAAGGTTGATCTTAA 886
|| | ||||||||| || ||||| ||| | | |||||||||||||||||||| || ||
Sbjct 869 ATCAAGATTTGGGACCTGGAGAGCAAGAGCA-TCGTTGAGGATTTGAAGGTTGACCTCAA 927
Query 887 GGCTGAGGCTGAAAAGACTGATGGTTCTACTGGAA-T-CGGAAAC-AAGACCAAGGTGAT 943
|||||||||||| ||| |||| | | ||| | | | || |||| ||||| ||
Sbjct 928 GGCTGAGGCTGAGAAGTCTGACAA--C-AGTGGTCCTGCTGCCACCAAGAGGAAGGTTAT 984
Query 944 CTACTGCACAAGCTTGAACTGGAGTGCAGATGGAAACACTTTGTTCAGTGGATACACTGA 1003
||||| ||||| ||||||||||| || ||||||| ||| ||||||||||| || || ||
Sbjct 985 TTACTGTACAAGTTTGAACTGGAGCGCTGATGGAAGCACCTTGTTCAGTGGTTATACCGA 1044
Query 1004 TGGAGTTATCAGGGTTTGGGGTATTGGTCGTTACTAG 1040
|||||| ||||| ||||||||||||||||||||||||
Sbjct 1045 TGGAGTCATCAGAGTTTGGGGTATTGGTCGTTACTAG 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46471835823
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5