BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48640.1
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336986 jgi|Araly1|336986|fgenesh1_pg.C_scaffold_1003551 1626 0.0
> Ahg336986 jgi|Araly1|336986|fgenesh1_pg.C_scaffold_1003551
Length=1944
Score = 1626 bits (880), Expect = 0.0
Identities = 988/1042 (95%), Gaps = 0/1042 (0%)
Strand=Plus/Plus
Query 64 ATTGACGAGCTTGAGAGACAGAAAGAGATCGATGATTGGCTTCCGATAACTTCATCGAGA 123
||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 874 ATTGAAGAGCTTGAGAGACAGAAAGATATCGACGATTGGCTACCGATAACTTCATCGAGA 933
Query 124 AACGCGAAATGGTGGTACTCCACGTTTCACAACGTGACTGCCATGGTTGGAGCTGGCGTC 183
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 934 AACGCGAAATGGTGGTACTCCACGTTTCACAATGTGACTGCCATGGTTGGAGCCGGCGTC 993
Query 184 CTTGGTCTCCCTTTCTTCATGGCCCAACTCGGATGGGGACCAGGCATAGCAGTCCTGATA 243
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 CTTGGTCTGCCTTACTCCATGGCCCAACTCGGATGGGGACCAGGCATAGCAGTCCTGATA 1053
Query 244 CTATCATGGATAATAACACTTTACACGTTATGGCAAATGGTGGAGATGCATGAGATGGTT 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 CTATCATGGATAATAACACTTTACACGTTATGGCAAATGGTGGAGATGCATGAGATGGTT 1113
Query 304 CCCGGAAAACGCTTTGATCGCTATCATGAACTTGGTCAGTTCGCATTTGGCGAACGTCTT 363
|| |||||||||||||| || || ||||||||||| |||||||| ||||| |||||||||
Sbjct 1114 CCTGGAAAACGCTTTGACCGTTACCATGAACTTGGCCAGTTCGCGTTTGGTGAACGTCTT 1173
Query 364 GGCCTTTATATTATCGTCCCTCAGCAAATCATTGTTGAAGTTGGAGTATGCATAGTTTAT 423
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 GGCCTTTATATCATCGTCCCTCAGCAAATCATTGTTGAAGTTGGAGTATGCATAGTTTAT 1233
Query 424 ATGGTCACCGGAGGACAGTCGTTGAAGAAGTTTCACGAAATCGCCTGTCAAGATTGCTCA 483
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1234 ATGGTCACCGGAGGACAGTCGTTGAAGAAGTTTCATGAACTCGCCTGTCAAGATTGCTCA 1293
Query 484 CCGATCAGACTTTCTTTCTTCATAATGATATTTGCTTCTTCTCATTTCGTTTTATCTCAT 543
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1294 CCGATTAGACTTTCTTTCTTCGTAATGATATTTGCTTCTTCTCATTTCGTTTTATCTCAT 1353
Query 544 CTCCCAAACTTCAACTCCATCTCGGGTGTCTCTCTTGTTGCGGCCGTCATGTCTCTTAGT 603
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1354 CTCCCAAACTTCAATTCCATCTCGGGTGTCTCTCTTGTGGCCGCCGTCATGTCTCTTAGT 1413
Query 604 TATTCGACAATTGCGTGGACAGCAACAGCCGCAAAGGGCGTTCAAGAAGATGTTCAATAT 663
|||||||| ||||| |||||||||||||| || |||||||| |||||||| |||||||||
Sbjct 1414 TATTCGACGATTGCTTGGACAGCAACAGCTGCGAAGGGCGTCCAAGAAGACGTTCAATAT 1473
Query 664 GGTTACAAATCAGGCACGACCGCGTCAACAGTCTTAAGCTTCTTTACGGGACTTGGGGGC 723
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1474 GGTTACAAATCAGGCACGACAGCGTCAACGGTCTTAAGCTTCTTTACGGGACTTGGGGGC 1533
Query 724 ATTGCGTTTGCATATGCAGGTCACAATGTGGTGCTTGAGATCCAAGCAACGATACCCTCT 783
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1534 ATTGCGTTTGCTTATGCAGGTCACAATGTGGTGCTTGAGATCCAAGCAACGATACCTTCT 1593
Query 784 ACACCAAGTAACCCTTCTAAAGGTCCTATGTGGAGAGGAGTGGTGGTGGCTTACGTGGTT 843
|| ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1594 ACTCCAAGTACCCCTTCTAAAGGTCCTATGTGGAGAGGAGTCGTGGTTGCTTACGTGGTT 1653
Query 844 GTGGCCTTGTGTTATTTCCCCGTTGCTTTGGTTGGCTATGGAGTTTTCGGAAACGCGGTT 903
|| |||||||||||||| ||||| ||||| ||||| || || ||||| |||||||| |||
Sbjct 1654 GTAGCCTTGTGTTATTTTCCCGTCGCTTTAGTTGGATACGGTGTTTTTGGAAACGCCGTT 1713
Query 904 TTGGATAACGTGTTGATGTCGCTCGAAACGCCCGTTTGGGCCATTGCAACTGCTAACTTG 963
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1714 TTGGATAACGTTTTGATGTCGCTCGAAACGCCCGTTTGGGCCATCGCAACCGCTAACTTG 1773
Query 964 TTCGTCGTTATGCATGTCATTGGTAGTTACCAGATATTCGCGATGCCGGTTTTCGACATG 1023
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1774 TTCGTCGTTATGCATGTCATTGGTAGTTACCAGATATTTGCGATGCCGGTTTTCGACATG 1833
Query 1024 GTGGAGACATTTCTGGTTAAGAAACTGAATTTCAAACCCTCTACAGTTCTTCGTTTCATT 1083
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1834 GTGGAGACATTTCTGGTTAAGAAACTAAATTTCAAACCCTCTACAATTCTTCGTTTCATC 1893
Query 1084 GTACGAAATGTTTATGTTGCTT 1105
||||||||||||||||||||||
Sbjct 1894 GTACGAAATGTTTATGTTGCTT 1915
Score = 60.2 bits (32), Expect = 4e-08
Identities = 37/39 (95%), Gaps = 1/39 (3%)
Strand=Plus/Plus
Query 1189 TAT-TTTCTTCCTTGCATAATGTGGCTGCTAATCTATAA 1226
||| || ||||||||||||||||||||||||||||||||
Sbjct 1906 TATGTTGCTTCCTTGCATAATGTGGCTGCTAATCTATAA 1944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50970340029
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5