BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48660.1
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474007 jgi|Araly1|474007|fgenesh2_kg.1__3961__AT1G48660.1 2422 0.0
> Ahg474007 jgi|Araly1|474007|fgenesh2_kg.1__3961__AT1G48660.1
Length=1731
Score = 2422 bits (1311), Expect = 0.0
Identities = 1598/1736 (92%), Gaps = 21/1736 (1%)
Strand=Plus/Plus
Query 1 ATGAGTTTAAGCGTTGAGCTCAAGGATTTGGAGGTCTTAACAACGAACGCAAAGCAAATA 60
||||||||||||||||||||||||||| ||||||| ||||||||||| || |||||||||
Sbjct 1 ATGAGTTTAAGCGTTGAGCTCAAGGATCTGGAGGTGTTAACAACGAATGCGAAGCAAATA 60
Query 61 CAAGATGATGTATTGAAGGAGATACTCACACTTAACGCCAACACAGAGTATCTCAAACGT 120
||||| || ||||||||||| ||||| ||||| |||||||||||||||||| || ||||
Sbjct 61 CAAGACGACGTATTGAAGGAAATACTAACACTCAACGCCAACACAGAGTATGTCCAACGC 120
Query 121 TTTCTCGATGGAAGCTCTGATAAAGAGTTGTTCAAGAAGAACGTACCGGTGGTGAGCTAC 180
|||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 121 TTTCTCCATGGAAGCTCTGATAAAGAGTTGTTCAAGAAGAATGTACCAGTGGTGAGCTAC 180
Query 181 AATGATGTCAAGCCTTATATCGAACGTGTTGCGAATGGAGAGCCCTCGGATGTGATTTCA 240
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GGTGATGTCAAGCCTTATATCGAGCGTGTTGCGAATGGAGAGCCCTCGGATGTGATTTCG 240
Query 241 GGTGGAA-CCATTACAAGATTCGTCCAAAGCACGGGAACTTCAGGAGGGATACATAAAAT 299
||| ||| ||||||| ||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 241 GGT-GAACCCATTACGAGATTCGTCCAAAGCTCGGGAACCTCAGGAGGGATACATAAAAT 299
Query 300 ATTTCCAGTGAACGATAAGTACATAGAGAATCTTGGATACCTTTTGGCTGTATCCTCTCT 359
|||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||| |
Sbjct 300 ATTTCCAGTGAACGATAAGTACATAGAGAAGCTGGGATACCTTGTGGATGTATCCTCTTT 359
Query 360 CATTACTT-----C----CAATGACAAGGTAGATGAGAAAGGAAAGAAAATGGCGTTTCT 410
|||||||| | ||||||||| |||| |||||||||||||||||||||||||||
Sbjct 360 CATTACTTCCAAGCATTTCAATGACAACGTAGCTGAGAAAGGAAAGAAAATGGCGTTTCT 419
Query 411 TTACAACAGATTAGAATCCAAAACTCCCTCCGGATTAGCCC-TTTCTTCATCATTTACAA 469
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||
Sbjct 420 TTACAACAGATTAGAATCCAAAACTCCCTCCGGATTA-CCCGTTTCTTCATCATTTTCAA 478
Query 470 GCTATTTCATGAGCGATTACTTCAAAAACCGGTCATCAAAATGTAATTCTGAGTACACAA 529
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 479 GCTATTTCATGAGCGATTACTTCAAAAACCGACCATCAAAATGTAATTCTGAGTACACAA 538
Query 530 GCCCCGACCAAGTCATATTGTGCCCCGACAACAACCAAAGTGTGTATTGTCATCTTCTAT 589
||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 539 GCCCCGACCAAGTTATATTTTGCCCCGACAACAACCAAAGTATGTATTGTCATCTTCTAT 598
Query 590 GTGGGCTTTCCCAGAGAGAAAAGGTTGTGGGAGTTAGTGCAACATTTGCTCATGCCTTAA 649
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GCGGGCTGTCCCAGAGAGAAAAGGTTGTGGGAGTTAGTGCAACATTTGCTCATGCCTTGG 658
Query 650 TCAAAGCAATAAATGCTCTTCAAATTTACTGGAAGGAATTGTCTAGTAATATCCGGTCAG 709
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 659 TCAAAGCACTCAATGCTCTTCAAATTTACTGGAAGGAATTGTCTAGTAATATCCGATCAG 718
Query 710 GTCATGTTAGTGAGTGGATCACTGAC-CTTGACTGCA-AAAATGCTGTCTCAGCCATTCT 767
|||||||||||||||||||||||||| | | |||| | ||| | ||||||| |||| |||
Sbjct 719 GTCATGTTAGTGAGTGGATCACTGACAC-TAACTGTAGAAACT-CTGTCTCGGCCACTCT 776
Query 768 TGGAGGACCTGACCCTGAATTGGCTGATGTGATTGAACAAGAATGCAGCCACAAGTCATG 827
||||||||| || | ||||||||| ||| ||||||||| |||||||||| |||| || ||
Sbjct 777 TGGAGGACCGGATCTTGAATTGGCCGATATGATTGAACGAGAATGCAGCAACAACTCGTG 836
Query 828 GGAAGGTATCATCACACGACTTTGGCCCAAAGCAAAGTTTATTGAATGCATTGTTACAGG 887
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 837 GGAAGGTATCATCACACGACTTTGGCCCAAAGCAAAATTTATTGAATGCATTGTTACAGG 896
Query 888 ACAAATGGCCCAATACATTCCAACATTGGACTTCTATTCCAACAAGCTTCCTATAGTTTC 947
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 897 ACAAATGGCTCAATACATTCCAACATTGGAGTTTTATTCCAACAAGCTTCCTATAGTTTC 956
Query 948 CATGGTATATGGGTCTTCTGAAAGTATATTTGGGGTGAATGTGGATCCTTTATCCAAACC 1007
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CATGATATATGGGTCTTCTGAAAGTATATTTGGGGTGAATGTGGATCCTTTATCCAAACC 1016
Query 1008 ACAAGATGTGTCCTACACATTTCTGCCCAATATCTCCTACTTTGAGTTTCTACCTATTGA 1067
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1017 ACAAGATGTGTCCTACACATTTCTGCCTAATATCTCCTACTTTGAGTTTCTACCTGTTGA 1076
Query 1068 TCATGAGGAAGATATGAACACCATTGTTGATCTTGTCGGTGTCAAGCTAGGGTGCTATTA 1127
||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||
Sbjct 1077 TCACGAGGAAGATATGAACAACATTGTTGATCTTGTCAACGTCAAGCTCGGGTGCTATTA 1136
Query 1128 TGAAACCGTGGTTACTAGTTATTTTGGTCTACACAGGTATCTTATTGGAGATATTCTACA 1187
||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1137 TGAAACCGTGGTTACCAGTTATTTTGGTCTACACAGATATCTTGTTGGAGATATTCTACA 1196
Query 1188 GGTGACTGGATTCTACAATAACACACCTCAATTTAGATTCGTACGCAGAAAGAATATTGT 1247
|||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 1197 GGTGACTGGATTTTACAATAAGACACCTCAATTTAGATTTGTACGCAGAAAGAATACTGT 1256
Query 1248 GTTAAGCGTCAATAGTGAAGCAACAACTGAACAGGACATTTTAA-AGGGGTTGGCTAGTG 1306
|||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |||
Sbjct 1257 TTTAAGCGTCAATAGTGAAGCAACAACTGAAGAGGACATTTTAAGAGGG-TTGGCTCGTG 1315
Query 1307 CGACCCTTGTTCTTGAGTCTTCAAATTCAATGTTGACGGGTTTCACATGTTATGCGGATA 1366
|||||||||||||||| |||||| ||| |||||||| ||| |||||||| | ||| |||
Sbjct 1316 CGACCCTTGTTCTTGAATCTTCAGATTTAATGTTGATGGGCTTCACATGCTGTGCATATA 1375
Query 1367 TCTCCAGTTTTCCAGGTCACTACGTCTTTTACTGGGAACTCAAAGCAAAAGATGTTGACG 1426
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1376 TCTCCACTTTTCCAGGTCACTACGTTTTTTACTGGGAACTCAAAGCAAAAGATGTTAACG 1435
Query 1427 ATGTTGTTGAGCTTGATGAAAATGTATTGGAAGAATGTTGCTATGCGTTAGAGGAATCGT 1486
|||||||||| ||||||||||| || |||| |||||||||| ||||||||||||||||||
Sbjct 1436 ATGTTGTTGAACTTGATGAAAAAGTGTTGGCAGAATGTTGCAATGCGTTAGAGGAATCGT 1495
Query 1487 TTGATGCTCTTTATAAAAGACTAAGGAGTAAAGAAGGGTCAATTGGAGCTCTAGAGATAA 1546
||| | |||||||||| |||||||||||||| || |||||| ||||||||||||||||||
Sbjct 1496 TTGGTTCTCTTTATAAGAGACTAAGGAGTAAGGATGGGTCAGTTGGAGCTCTAGAGATAA 1555
Query 1547 AAGTGGTGCAACAAGGAACATTTGATTCTCTCATGGAATATTTCATCTCCAAAGGTGGTT 1606
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1556 GGGTGGTGCAACAAGGAACATTTGATTCTCTCATGGAATATTTCGTCTCCCAAGGTTGTT 1615
Query 1607 CG-GTTGCTCAATACAAGACACCTATGTGTATCAACTCTTCGGAAACCTTAGCAGTTCTT 1665
|| || ||||| ||||| |||||||| || ||||||||||| ||| |||| |||||||||
Sbjct 1616 CGAGT-GCTCAGTACAAAACACCTATTTGCATCAACTCTTCTGAAGCCTTGGCAGTTCTT 1674
Query 1666 GAAGATAAGGTTATTGCTCGATTCTACAGCCAAAAATCTCCTCCTCTTAACTTATA 1721
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1675 GAAGATAAGGTTCTTGCTCGATTCTACAGCGAAAAATCTCCTCCTCTTGACTTATA 1730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64601055520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5