BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G48690.1

Length=732
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg913908 jgi|Araly1|913908|Al_scaffold_0001_4162                    287    8e-77
  Ahg922921 jgi|Araly1|922921|scaffold_104202.1                       54.7    9e-07


> Ahg913908 jgi|Araly1|913908|Al_scaffold_0001_4162
Length=369

 Score =  287 bits (155),  Expect = 8e-77
 Identities = 219/250 (88%), Gaps = 4/250 (2%)
 Strand=Plus/Plus

Query  382  TCTGGAACTTCTGGAGGGAAACAAAAGATCTTTCCTGTGAACAACAAGTACTTCGAGAAT  441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  64   TCTGGAACTTCTGGAGGGAAACAAAAGATCTTTCCTGTGAACAACAAGTACTTCGAGAAT  123

Query  442  ATGATATTCATCCACGCTTTATGCTCGTCCACTATATCCAAGTACATCGATGGCATTGGG  501
            |||  ||||||| | | | ||||||| |||| | |||||||||||||||||||  |  ||
Sbjct  124  ATGGCATTCATCAATGGTCTATGCTCCTCCATTCTATCCAAGTACATCGATGGTGTCAGG  183

Query  502  GAAGGAAAAGTGATGGCGTTTCTCAATACTAGACCGTT-TAGTAAAACTCCCTCTGGTTT  560
             ||||||| |||||| |||||||||| ||||||||||| |  || |||||||||||||||
Sbjct  184  AAAGGAAAGGTGATGACGTTTCTCAACACTAGACCGTTGTC-TACAACTCCCTCTGGTTT  242

Query  561  GCCTGTTGCTCCTCTATCTACAAGCTTTGCTA-TGAGTGATTATTTCAAGAACCGGCCAT  619
            |||| ||||||| || ||||| |||||  ||| ||||||||||||||||||||| ||| |
Sbjct  243  GCCTATTGCTCCCCTGTCTACGAGCTTC-CTAATGAGTGATTATTTCAAGAACCTGCCTT  301

Query  620  CAAAGTGTTA  629
            |||| |||||
Sbjct  302  CAAAATGTTA  311


> Ahg922921 jgi|Araly1|922921|scaffold_104202.1
Length=303

 Score = 54.7 bits (29),  Expect = 9e-07
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  592  ATGAGTGATTATTTCAAGAACCGGCCATC  620
            |||||||||||||||||||||||||||||
Sbjct  275  ATGAGTGATTATTTCAAGAACCGGCCATC  303



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26952902319


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5