BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48690.1 Length=732 Score E Sequences producing significant alignments: (Bits) Value Ahg913908 jgi|Araly1|913908|Al_scaffold_0001_4162 287 8e-77 Ahg922921 jgi|Araly1|922921|scaffold_104202.1 54.7 9e-07 > Ahg913908 jgi|Araly1|913908|Al_scaffold_0001_4162 Length=369 Score = 287 bits (155), Expect = 8e-77 Identities = 219/250 (88%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 382 TCTGGAACTTCTGGAGGGAAACAAAAGATCTTTCCTGTGAACAACAAGTACTTCGAGAAT 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 TCTGGAACTTCTGGAGGGAAACAAAAGATCTTTCCTGTGAACAACAAGTACTTCGAGAAT 123 Query 442 ATGATATTCATCCACGCTTTATGCTCGTCCACTATATCCAAGTACATCGATGGCATTGGG 501 ||| ||||||| | | | ||||||| |||| | ||||||||||||||||||| | || Sbjct 124 ATGGCATTCATCAATGGTCTATGCTCCTCCATTCTATCCAAGTACATCGATGGTGTCAGG 183 Query 502 GAAGGAAAAGTGATGGCGTTTCTCAATACTAGACCGTT-TAGTAAAACTCCCTCTGGTTT 560 ||||||| |||||| |||||||||| ||||||||||| | || ||||||||||||||| Sbjct 184 AAAGGAAAGGTGATGACGTTTCTCAACACTAGACCGTTGTC-TACAACTCCCTCTGGTTT 242 Query 561 GCCTGTTGCTCCTCTATCTACAAGCTTTGCTA-TGAGTGATTATTTCAAGAACCGGCCAT 619 |||| ||||||| || ||||| ||||| ||| ||||||||||||||||||||| ||| | Sbjct 243 GCCTATTGCTCCCCTGTCTACGAGCTTC-CTAATGAGTGATTATTTCAAGAACCTGCCTT 301 Query 620 CAAAGTGTTA 629 |||| ||||| Sbjct 302 CAAAATGTTA 311 > Ahg922921 jgi|Araly1|922921|scaffold_104202.1 Length=303 Score = 54.7 bits (29), Expect = 9e-07 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 592 ATGAGTGATTATTTCAAGAACCGGCCATC 620 ||||||||||||||||||||||||||||| Sbjct 275 ATGAGTGATTATTTCAAGAACCGGCCATC 303 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26952902319 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5