BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48700.1
Length=1174
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474008 jgi|Araly1|474008|fgenesh2_kg.1__3962__AT1G48700.1 1336 0.0
Ahg915870 jgi|Araly1|915870|Al_scaffold_0008_621 1127 0.0
Ahg336994 jgi|Araly1|336994|fgenesh1_pg.C_scaffold_1003559 453 1e-126
Ahg941972 jgi|Araly1|941972|scaffold_602516.1 183 2e-45
Ahg936794 jgi|Araly1|936794|scaffold_500985.1 183 2e-45
Ahg923758 jgi|Araly1|923758|scaffold_105039.1 183 2e-45
Ahg948824 jgi|Araly1|948824|scaffold_800711.1 182 7e-45
> Ahg474008 jgi|Araly1|474008|fgenesh2_kg.1__3962__AT1G48700.1
Length=904
Score = 1336 bits (723), Expect = 0.0
Identities = 848/908 (93%), Gaps = 10/908 (1%)
Strand=Plus/Plus
Query 35 TTCATGTGTATATAATGTTCCAGGCTAAACGGCGCAAGACCTATAGGCAAGAGATAATAT 94
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2 TTCATGTGTATATAATGTTCCAGGCGAAACGGCGCAAGACATATAGGCAAGAGATAATAT 61
Query 95 CCAATTATCAGCCACGTTTCAAGGGGTTGTATAAACTTGATCCCAAATTGTTTTTGCTTC 154
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 62 CCAATTATCAGCCACGTTTCAAGGGGTTGTATAAACTTGATCCTAAATTGTTTTTGCTTC 121
Query 155 CCTCGTTCCGCAAGGCGATCAGCGAAAACACAGAGGAAAGCTTCAGACGTATCATTTCTG 214
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CCTCATTCCGCAAGGCGATCAGCGAAAACACAGAGGAAAGCTTCAGACGTATCATTTCTG 181
Query 215 AACCGTTTCCTGGTGTTTTTGTCTTTAAAATGTTTCAGCCTGACTTCTCTGAGAAATTGC 274
||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct 182 AACCGTTTCCTGGTGTTTTCGTCTTTAAAATGTTTCAGCCTGAATTCTTTGAGAAATTGC 241
Query 275 TA-TTAGAGGTAGAGAATTTCAGAAAGTGGGCTAATGAGACAAACTTCACGATCAGGAGA 333
|| || ||||||||||||||||||||||||||| |||||| ||| |||||||||||||||
Sbjct 242 TAGTT-GAGGTAGAGAATTTCAGAAAGTGGGCTCATGAGAAAAATTTCACGATCAGGAGA 300
Query 334 CCAGACAACACGAGTAAATACGGTGTTGTACTTGACGACTTTGGCCTGGATATTATGCTT 393
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 CCAGACAACACGAGTAAATACGGTGTTGTACTTGACGACTTTGGCCTGGATATCATGCTT 360
Query 394 AAGCAACTCATGGATGATTTTATCTTTCCTATTTGCAAAGTATTCTTTCCTGAAGTGTGT 453
|||||||||||||| || ||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 361 AAGCAACTCATGGAGGAGTTTATCTTTCCTATTTGCAAAGTATGCTTCCCTGAAGTGTGT 420
Query 454 GGAACAATGTTTGACTCTCACTATGGATTTTTTATTGAAAATGGTGAAGATAGGGATGCT 513
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 421 GGAACAATGTTTGACTCTCACTATGGATTTTTAACTGAAAATGGTGAAGATAGGGATGCT 480
Query 514 GACGTAGGCTTTCATGTGGAAGATTCAGACA-TAACATTGAATGTTTGTTTGAGTAAACA 572
||||||||||||||||||||||||||||| | | |||||||| |||||||| ||||||||
Sbjct 481 GACGTAGGCTTTCATGTGGAAGATTCAGA-AGTGACATTGAACGTTTGTTTAAGTAAACA 539
Query 573 AGGTGAGGGAGGAGAAATACTTTTCGCAGGCGCACGATGCAATAAACATATGGATATAGA 632
||| |||||||| |||||| ||||||||||| || ||||||| ||||||||||||| |||
Sbjct 540 AGGAGAGGGAGGGGAAATATTTTTCGCAGGCACAAGATGCAAGAAACATATGGATACAGA 599
Query 633 TCCAAAGCCAGAGGAATATTTTGATTACTGCCATATACCGGGTCAAGCTATACTTCACCG 692
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 TCCAAAGCCAGAGGAATGTTTTGATTACTGTCATATACCGGGTCAAGCTATACTTCACCG 659
Query 693 TGGCTGCCAC-GTCCATGGTGCTAGAGCCAC-AGCATCTGGTCGTCGGGCCAATATGATT 750
|||||||||| | ||||||||| |||||||| | ||||||||||| ||||||||||||||
Sbjct 660 TGGCTGCCACCG-CCATGGTGCCAGAGCCACGA-CATCTGGTCGTTGGGCCAATATGATT 717
Query 751 CTTTGGTGCCAGAACTCTTTGTTTAGAGAGATGCAAACTTATGAACCGGAATTCTCAGAC 810
||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 718 CTTTGGTGCCAAAACTCTTTGTTTAGAGAGATGCAAACTTATGAGCCGGCATTCTCAGAC 777
Query 811 TGGTGCGGTCAATGTGTCCATGAAGA-GAAAGAAAACAAAAGCCAGATTCTTGCTGTCAA 869
|||||||||||||||||||||||| | ||||||||| ||||||||| |||||||| |||
Sbjct 778 TGGTGCGGTCAATGTGTCCATGAA-ATGAAAGAAAAGGAAAGCCAGAGTCTTGCTGCCAA 836
Query 870 AAGAAAGGAGATGTTTAGGATAGAGAGTGAAGCCGAACCTCCACGaaaaaaaTGAAGTTT 929
|||||||| | | | ||||||||||||| ||| ||||||||||||| ||||||||
Sbjct 837 AAGAAAGGTTACAAAAAAGTTAGAGAGTGAAGCTGAAGCTCCACGAAAAAACTGAAGTTT 896
Query 930 ATGCTTTG 937
||||||||
Sbjct 897 ATGCTTTG 904
> Ahg915870 jgi|Araly1|915870|Al_scaffold_0008_621
Length=855
Score = 1127 bits (610), Expect = 0.0
Identities = 783/864 (91%), Gaps = 22/864 (3%)
Strand=Plus/Plus
Query 49 ATGTTCCAGGCTAAACGGCGCAAGACCTATAGGCAAG-AGATAATATCCAATTATCAGCC 107
||||| |||||||||| | ||||| ||||||| || ||||||||||||||||||||||
Sbjct 1 ATGTTGCAGGCTAAACAGTACAAGAACTATAGG-GAGAAGATAATATCCAATTATCAGCC 59
Query 108 ACGTTTCAAGGG-GTTGTATAAACTTGATCCCAAATTGTTTTTGCTTCCCT-CGTTCCGC 165
||||||| |||| ||||||||||||||||||| ||| |||||||||| ||| | |||||
Sbjct 60 ACGTTTC-AGGGAGTTGTATAAACTTGATCCCGAATCGTTTTTGCTT-CCTACTTTCCGG 117
Query 166 AAGGCGATCAGCGAAAACACAGAGGAAAGCTTCAGACGTATCATTTCTGAACCGTTTCCT 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AAGGCGATCAGCGAAAACACAGAGGAAAGCTTCAGACGTATCATTTCTGAACCGTTTCCT 177
Query 226 GGTGTTTTTGTCTTTAAAATGTTTCAGCCTGACTTCTCTGAGAAATTGCTAT-TAGAGGT 284
|||||||| |||||| ||||||||||||||||||||| ||||||||||||| | |||||
Sbjct 178 GGTGTTTTCGTCTTTGAAATGTTTCAGCCTGACTTCTTTGAGAAATTGCTAGCT-GAGGT 236
Query 285 AGAGAATTTCAGAAAGTGGGCTAATGAGACAAACTTCACGATCAGGAGACCAGACAACAC 344
|||||||||||||||||||||| |||||||||| || | ||||| ||||||| |||| |
Sbjct 237 AGAGAATTTCAGAAAGTGGGCTCATGAGACAAAGTTGAAGATCATGAGACCAAACAAAAT 296
Query 345 GAGTAAATACGGTGTTGTACTTGACGACTTTGGCCTGGATATTATGCTTAAGCAACTCAT 404
|||||||| ||||||||| |||||||||||||||||| |||| |||||||| ||||||||
Sbjct 297 GAGTAAATTCGGTGTTGTGCTTGACGACTTTGGCCTGCATATCATGCTTAAACAACTCAT 356
Query 405 GGATGATTTTATCTTTCCTATTTGCAAAGTATTCTTTCCTGAAGTGTGTGGAACAATGTT 464
||| |||||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||
Sbjct 357 GGAGGATTTTATCTTTCCTATTTGCAAAGTATTCTTCCCTAAAGAGTGTGGAGCAATGTT 416
Query 465 TGACTCTCA-CTATGGATTTTTTATTGAAAATGGTGAAGATAGGGATGCTGACGTAGGCT 523
||||||||| | ||||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 417 TGACTCTCAACG-TGGATCTTTTATTGAAAATGGTGAAGATAGGAATGCTGAATTAGGCT 475
Query 524 TTCATGTGGAAGATTCAGACATAACATTGAATGTTTGTTTGAGTAAACAAGGTGAGGGAG 583
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 476 TACATGTGGAAGATTCAGAAATAACATTGAATGTTTGTTTAAGTAAACAAGGTGAGGGAG 535
Query 584 GAGAAATACTTTTCGCAGGCGCACGATGCAATAAACATATGGATATAGATCCAAAGCCAG 643
| |||||| |||||| |||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 536 GGGAAATATTTTTCGAAGGCACACGATGCAAGAAACATATGGATATAGATCCAAAGCCAG 595
Query 644 AGGAATATTTTGATTACTGCCATATACCGGGTCAAGCTATACTTCACCGTGGCTGCCACG 703
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AGGAACGTTTTGATTACTGTCATATACCGGGTCAAGCTATACTTCACCGTGGCTGCCACG 655
Query 704 TCCATGGTGCTAGAGC--C-ACAGCATCTGGTCGTCGGGCCAATATGATTCTTTGGTGCC 760
|||||||||| ||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 656 TCCATGGTGCCAGAGCAGCCACAACATCTGGTCGTCGGGCCAATATGATTCTTTGGTGC- 714
Query 761 AGAA-CTCTTTGTTTAGAGAGATGCAAACTTATGA-ACCGGAATTCTC-AGACTGGTGCG 817
|||| ||||||||| |||||||||||||||||||| | ||||||| | |||||||||||
Sbjct 715 AGAAACTCTTTGTTCAGAGAGATGCAAACTTATGAGAA-GGAATTC-CGAGACTGGTGCG 772
Query 818 GTCAATGTGTCCATGAAGAGAAAGAAAACAAAAGCCAGAT-TCTTGCTGTCAAAAGAAAG 876
||||||| ||||||||| |||||||||| |||||||| | |||||||| ||||||||||
Sbjct 773 GTCAATGCGTCCATGAAAAGAAAGAAAAGGAAAGCCAG-TGTCTTGCTGCCAAAAGAAAG 831
Query 877 GAGATGTTTAGGATAG-AGAGTGA 899
|||||| |||||||| |||||||
Sbjct 832 GAGATGATTAGGATAATAGAGTGA 855
> Ahg336994 jgi|Araly1|336994|fgenesh1_pg.C_scaffold_1003559
Length=1185
Score = 453 bits (245), Expect = 1e-126
Identities = 346/393 (88%), Gaps = 13/393 (3%)
Strand=Plus/Plus
Query 48 AATGTTCC-AGGCTAAACGGCGCAAGACCTATAGGCAAGA-GATAATATCCAATTATCAG 105
|||||||| | ||||| |||||||||||||| || ||| ||||| |||||||||||||
Sbjct 275 AATGTTCCAAAGCTAATTGGCGCAAGACCTATTCGC-AGAGGATAAAATCCAATTATCAG 333
Query 106 CCACGTTT-CAAGGG-GTTGTATAAACTTGATCCCAAATTGTTTTTGCTTCCCTCGTTCC 163
|||| ||| | |||| ||||||||| |||||||| |||||||| |||||||||| ||||
Sbjct 334 CCAC-TTTGC-AGGGAGTTGTATAATTTTGATCCCGAATTGTTTCTGCTTCCCTCTTTCC 391
Query 164 GCAAGGCGATCAGCGAAAACACAGAGGAAAGCTTCAGACGTATCATTTCTGAACCGTTTC 223
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 392 GAAAGGCGATCAGCGACAACACAGAGGAAAGCTTCAGACGCATCATTTCTGAACCGTTTC 451
Query 224 CTGGTGTTTTTGTCTTTAAAATGTTTCAGCCTGACTTCTCTGAGAAATTGCTATTAGAGG 283
||||||||||||||||| |||||||||||||||| |||| | |||||||| || ||||||
Sbjct 452 CTGGTGTTTTTGTCTTTCAAATGTTTCAGCCTGATTTCTTTCAGAAATTGATAGTAGAGG 511
Query 284 TAGAGAATTTCAGAAAGTGGGCTAATGAGACAAACTTCACGA-TCAGGAGACCAG-ACAA 341
|||| ||| ||| |||||||||| |||||| ||| ||| | | | |||||||| | || |
Sbjct 512 TAGAAAATATCAAAAAGTGGGCTCATGAGAAAAAGTTC-CAAATTAGGAGACC-GTACCA 569
Query 342 CACGAGTAAATACGGTGTTGTACTTGACGACTTTGGCCTGGATATTATGCTTAAG-CAAC 400
|||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||| || |
Sbjct 570 CACGAGTAGATACGGTGTTGTGCTTGATGACTTTGGCCTGGATATCATGCTTAAGACA-C 628
Query 401 TCATGGATGATTTTATCTTTCCTATTTGCAAAG 433
||||||| |||||||||||||||||||||||||
Sbjct 629 TCATGGAGGATTTTATCTTTCCTATTTGCAAAG 661
Score = 431 bits (233), Expect = 6e-120
Identities = 394/468 (84%), Gaps = 25/468 (5%)
Strand=Plus/Plus
Query 434 TATTCTTT-CCTGAAGTGTGTGGAACAATGTTTGACTCTCACTATGGATTTTTTATTGAA 492
|||| ||| |||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 701 TATT-TTTCCCTGAACTGTGTGGAACAATGTTTGACTCTCACCATGGATTTATTATTGAA 759
Query 493 AATGGTGAAGATAGGGATGCTGACGT-AGGCTTTCATGTGGAAGATTCAGACATAACATT 551
||||||||||||||||||||| | | || | |||| | || |||||||| ||||||||
Sbjct 760 AATGGTGAAGATAGGGATGCTC-CATTAGACCATCATTTTGATGATTCAGAAATAACATT 818
Query 552 GAATGTTTGTTTGAGTAAACAAGGTGAGGGAGGAGAAATA-CTTTTCGCAGGCGCACGAT 610
|||||||||| |||| |||||| ||||||||| |||||| |||| | ||| ||||||
Sbjct 819 GAATGTTTGTGTGAGGAAACAATTTGAGGGAGGGGAAATATCTTT-CATTGGCACACGAT 877
Query 611 GCAAT-AAACATATG-GATATAGATCCAAAGCCAGAGGAA-TATTTTGATTACTGCCATA 667
|| | ||||||||| || | | || ||||||||||||| | |||| ||||| | ||||
Sbjct 878 GCG-TGAAACATATGCGA-ACAAATATAAAGCCAGAGGAAGT-TTTTCATTACAGTCATA 934
Query 668 TACCGGGTCAAGCTATACTTCACCGTGGCTGCCAC-GTCCATGGTGCTAGAGCCAC-AGC 725
|||||||||||||||||||||||||||| ||||| | ||||||| | ||| |||| | |
Sbjct 935 CACCGGGTCAAGCTATACTTCACCGTGGCCGCCACCG-CCATGGTCCCAGAACCACCA-C 992
Query 726 A--T-CTGGT-CGTCGGGCCAATATGATTCTTTGGTGCCAGAA-CTCTTTGTTTAGAGAG 780
| | || || | ||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct 993 AAATTCTTGTTC-TCGGGCCAATATGATTCTTTGTTGC-AGAAACTCTTTGTTTAGAGAG 1050
Query 781 ATGCAAACTTATGA-ACCGGAATTCTCAGACTGGTGCGGTCAATGTGTCCATGAAGAGAA 839
||| |||||||||| | ||||||| |||| |||||||||||||| | ||||||| ||||
Sbjct 1051 ATGGAAACTTATGAGAA-GGAATTCCCAGAGTGGTGCGGTCAATGCGCCCATGAAAAGAA 1109
Query 840 AGAAAACAAAAGCCAGATTCTTGCTGTCAAAAGAAAGGAGATGTTTAG 887
|||||| ||||||||| |||||||| ||||||||||| |||| ||||
Sbjct 1110 AGAAAAGGAAAGCCAGAGTCTTGCTGCCAAAAGAAAGGGGATGATTAG 1157
> Ahg941972 jgi|Araly1|941972|scaffold_602516.1
Length=529
Score = 183 bits (99), Expect = 2e-45
Identities = 127/141 (90%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 505 AGGGATGCTGACGTAGGCTTTCATGTGGAAGATTCAGACATAACATTGAATGTTTGTTTG 564
|||||| |||||| || ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 152 AGGGATTCTGACGCAGACTTTCATGTGGAAGATTCAAAAATAACATTGAATGTTTGTTTG 211
Query 565 AGTAAACAAGGTGAGGGAGGAGAAATACTTTTCGCAGGCGCACGATGCAATAAACATATG 624
||||||||||| |||||||| |||||| |||| |||||| ||| |||||| |||||||||
Sbjct 212 AGTAAACAAGGAGAGGGAGGGGAAATATTTTTTGCAGGCACACAATGCAAGAAACATATG 271
Query 625 GATATAGATCCAAAGCCAGAG 645
|||| |||| |||||||||||
Sbjct 272 GATACAGATTCAAAGCCAGAG 292
> Ahg936794 jgi|Araly1|936794|scaffold_500985.1
Length=543
Score = 183 bits (99), Expect = 2e-45
Identities = 127/141 (90%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 505 AGGGATGCTGACGTAGGCTTTCATGTGGAAGATTCAGACATAACATTGAATGTTTGTTTG 564
|||||| |||||| || ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 152 AGGGATTCTGACGCAGACTTTCATGTGGAAGATTCAAAAATAACATTGAATGTTTGTTTG 211
Query 565 AGTAAACAAGGTGAGGGAGGAGAAATACTTTTCGCAGGCGCACGATGCAATAAACATATG 624
||||||||||| |||||||| |||||| |||| |||||| ||| |||||| |||||||||
Sbjct 212 AGTAAACAAGGAGAGGGAGGGGAAATATTTTTTGCAGGCACACAATGCAAGAAACATATG 271
Query 625 GATATAGATCCAAAGCCAGAG 645
|||| |||| |||||||||||
Sbjct 272 GATACAGATTCAAAGCCAGAG 292
> Ahg923758 jgi|Araly1|923758|scaffold_105039.1
Length=543
Score = 183 bits (99), Expect = 2e-45
Identities = 127/141 (90%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 505 AGGGATGCTGACGTAGGCTTTCATGTGGAAGATTCAGACATAACATTGAATGTTTGTTTG 564
|||||| |||||| || ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 152 AGGGATTCTGACGCAGACTTTCATGTGGAAGATTCAAAAATAACATTGAATGTTTGTTTG 211
Query 565 AGTAAACAAGGTGAGGGAGGAGAAATACTTTTCGCAGGCGCACGATGCAATAAACATATG 624
||||||||||| |||||||| |||||| |||| |||||| ||| |||||| |||||||||
Sbjct 212 AGTAAACAAGGAGAGGGAGGGGAAATATTTTTTGCAGGCACACAATGCAAGAAACATATG 271
Query 625 GATATAGATCCAAAGCCAGAG 645
|||| |||| |||||||||||
Sbjct 272 GATACAGATTCAAAGCCAGAG 292
> Ahg948824 jgi|Araly1|948824|scaffold_800711.1
Length=598
Score = 182 bits (98), Expect = 7e-45
Identities = 129/144 (90%), Gaps = 1/144 (1%)
Strand=Plus/Plus
Query 506 GGGATGCTGACGTAGGCTTTCATGTGGAAGATTCAGACATAACATTGAATGTTTGTTTGA 565
||||| || ||| || ||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 186 GGGATTCTAACGCAGACTTTCATGTGGAAGATTCAAAAATAACATTGAATGTTTGTTTGA 245
Query 566 GTAAACAAGGTGAGGGAGGAGAAATACTTTTCGCAGGCGCACGATGCAATAAACATATGG 625
|||||||||| |||||||| |||||| |||| |||||| ||| |||||| ||||||||||
Sbjct 246 GTAAACAAGGAGAGGGAGGGGAAATATTTTTTGCAGGCACACAATGCAAGAAACATATGG 305
Query 626 ATATAGATCCAAAGCCAGAGGAAT 649
||| |||||||||||||||| |||
Sbjct 306 ATACAGATCCAAAGCCAGAG-AAT 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43803231633
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5