BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48740.2
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336994 jgi|Araly1|336994|fgenesh1_pg.C_scaffold_1003559 913 0.0
Ahg915870 jgi|Araly1|915870|Al_scaffold_0008_621 894 0.0
Ahg474008 jgi|Araly1|474008|fgenesh2_kg.1__3962__AT1G48700.1 852 0.0
Ahg913909 jgi|Araly1|913909|Al_scaffold_0001_4163 726 0.0
> Ahg336994 jgi|Araly1|336994|fgenesh1_pg.C_scaffold_1003559
Length=1185
Score = 913 bits (494), Expect = 0.0
Identities = 613/669 (92%), Gaps = 13/669 (2%)
Strand=Plus/Plus
Query 106 ATGGCGTTGGACGGTGACGAAACAGTCGCAGGTGGAGATTCTCAACCACCGGTGACTACT 165
|||||| |||||||||||| ||| || | ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGTGGACGGTGACGGAACTGTTGGTGGTGGAGATTCTCAACCACCGGTGACTACT 60
Query 166 GCAGCGGCGACTACAGAGGAGAAGGCTATCGCGAGGCTGAGTCCGTTTCCTAACATGGAG 225
|| |||||||| || | |||| |||||||||||||||||||| ||||||||||||||||
Sbjct 61 GCGGCGGCGACGAC--A-GAGATGGCTATCGCGAGGCTGAGTCGGTTTCCTAACATGGAG 117
Query 226 CACATTTCTGATAACTACGGA-GATCTGGAACTGGAATATAGCTCTGCCATGTTAAGCTC 284
|| ||||||||||||||| || |||||| ||||||||| ||||||| |||||||||||||
Sbjct 118 CATATTTCTGATAACTAC-GACGATCTGAAACTGGAATTTAGCTCTTCCATGTTAAGCTC 176
Query 285 GCTAGAGAAGTACTTGCCGCCGGAAATGCTCACGGCG-ACTAGAGAAGAGAAGGCCAAAT 343
||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 177 GCTAGAGAAGTACTTGCCGCCGGCAATGCTCACGGCGAAC-AGAGAAGAGAAGGCCAAAT 235
Query 344 TCATGTCTGACATTTTGCGCAAGTACATTTCCCGCGACGAATGTTCCAAAGCTAAATGGT 403
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 236 TCATGTCAGACATTTTGCGCAAGTACATTTCCCGCGAAGAATGTTCCAAAGCTAATTGGC 295
Query 404 GCAAGAACTATTGGCAGAAGATAAAATCTAATTATCAGCCACTTT-CTAGGGAGTTGTAT 462
|||||| ||||| ||||| ||||||||| |||||||||||||||| | ||||||||||||
Sbjct 296 GCAAGACCTATTCGCAGAGGATAAAATCCAATTATCAGCCACTTTGC-AGGGAGTTGTAT 354
Query 463 AATTTTGATCCCGAATTGTTTCTGCTTCCCTCTTTCCGAAAGGCGATCAGCGAAAACACA 522
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 355 AATTTTGATCCCGAATTGTTTCTGCTTCCCTCTTTCCGAAAGGCGATCAGCGACAACACA 414
Query 523 AAGGAAAGCTTCAGACGTATCATTTCTGAACCGTTTCCTGGTGTTCTTGTCTTTCAAATG 582
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 415 GAGGAAAGCTTCAGACGCATCATTTCTGAACCGTTTCCTGGTGTTTTTGTCTTTCAAATG 474
Query 583 TTTCAGCCTGACTTCATTCAGAAATTGATAGTAGAGGTAGAAAATATCGGAAAGTGGGTT 642
||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 475 TTTCAGCCTGATTTCTTTCAGAAATTGATAGTAGAGGTAGAAAATATCAAAAAGTGGGCT 534
Query 643 CATGAGACAAATTTCCCAATCAGGAGACCGTACCACATGAGTAAATACGGTGTTGCGTTT 702
||||||| ||| |||| ||| |||||||||||||||| ||||| ||||||||||| | ||
Sbjct 535 CATGAGAAAAAGTTCCAAATTAGGAGACCGTACCACACGAGTAGATACGGTGTTGTGCTT 594
Query 703 G-TCGACTTTGGCCTGGATATCATGCTTCAG-CAACTCATGGAGGAATTTCTCTTTCCTA 760
| | |||||||||||||||||||||||| || || ||||||||||| ||| |||||||||
Sbjct 595 GAT-GACTTTGGCCTGGATATCATGCTTAAGACA-CTCATGGAGGATTTTATCTTTCCTA 652
Query 761 TTTGCAAAG 769
|||||||||
Sbjct 653 TTTGCAAAG 661
Score = 638 bits (345), Expect = 0.0
Identities = 415/449 (92%), Gaps = 4/449 (1%)
Strand=Plus/Plus
Query 770 TATTCTTCCCTGAAGAGTGTGGAGCAATGTTTGACTCTCACCATGGATATTA-TATTGAA 828
|||| ||||||||| ||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct 701 TATTTTTCCCTGAACTGTGTGGAACAATGTTTGACTCTCACCATGGAT-TTATTATTGAA 759
Query 829 AATGGTGAAGATAGGGATCCTCCATTAGGCTATCATTTAGATGATTCGGAAATAACATTG 888
|||||||||||||||||| ||||||||| | ||||||| |||||||| ||||||||||||
Sbjct 760 AATGGTGAAGATAGGGATGCTCCATTAGACCATCATTTTGATGATTCAGAAATAACATTG 819
Query 889 AATGTTTGTGTGAGGAAACAATTTGAGGGAGGGGAAATATCTTTCATAGGCACACGATGC 948
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 820 AATGTTTGTGTGAGGAAACAATTTGAGGGAGGGGAAATATCTTTCATTGGCACACGATGC 879
Query 949 TTGAGACATAAGCGAACAGACGTAAAGCCAGAGGAAGTTTTTCATTACTGTCATTCACCG 1008
||| ||||| ||||||| | |||||||||||||||||||||||||| ||||| |||||
Sbjct 880 GTGAAACATATGCGAACAAATATAAAGCCAGAGGAAGTTTTTCATTACAGTCATACACCG 939
Query 1009 GGTCAAGCTATACTTCATCGTGGCCGCCACCGCCATGGTCCCAGAGCCAACACACCA-TC 1067
||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| | ||
Sbjct 940 GGTCAAGCTATACTTCACCGTGGCCGCCACCGCCATGGTCCCAGAACCACCACA-AATTC 998
Query 1068 TTGTTCTCGGGCCAATATGATTCTTTGTTGCAGAAACTCTTTGTTTAGAGAGATGGAAAA 1127
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 TTGTTCTCGGGCCAATATGATTCTTTGTTGCAGAAACTCTTTGTTTAGAGAGATGGAAAC 1058
Query 1128 ATATGAGAAAGATTTCCCAGAGTGGTGCAATGAATGCGCCCATgaaaagaaagaaaagga 1187
|||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1059 TTATGAGAAGGAATTCCCAGAGTGGTGCGGTCAATGCGCCCATGAAAAGAAAGAAAAGGA 1118
Query 1188 aagccagagtcttgatgccaaaagaaagg 1216
|||||||||||||| ||||||||||||||
Sbjct 1119 AAGCCAGAGTCTTGCTGCCAAAAGAAAGG 1147
> Ahg915870 jgi|Araly1|915870|Al_scaffold_0008_621
Length=855
Score = 894 bits (484), Expect = 0.0
Identities = 731/847 (86%), Gaps = 29/847 (3%)
Strand=Plus/Plus
Query 384 ATGTTCCAAAGCTAAATGGTGCAAGAACTATTGGCAGAAGATAAAATCTAATTATCAGCC 443
||||| | | |||||| || |||||||||| || ||||||||| ||| |||||||||||
Sbjct 1 ATGTTGC-AGGCTAAACAGTACAAGAACTATAGGGAGAAGATAATATCCAATTATCAGCC 59
Query 444 AC-TTTCTAGGGAGTTGTATAATTTTGATCCCGAATTGTTTCTGCTTCCCT-CTTTCCGA 501
|| |||| |||||||||||||| |||||||||||| |||| ||||| ||| |||||||
Sbjct 60 ACGTTTC-AGGGAGTTGTATAAACTTGATCCCGAATCGTTTTTGCTT-CCTACTTTCCGG 117
Query 502 AAGGCGATCAGCGAAAACACAAAGGAAAGCTTCAGACGTATCATTTCTGAACCGTTTCCT 561
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 118 AAGGCGATCAGCGAAAACACAGAGGAAAGCTTCAGACGTATCATTTCTGAACCGTTTCCT 177
Query 562 GGTGTTCTT-GTCTTTCAAATGTTTCAGCCTGACTTCATTCAGAAATTGATAG-TAGAGG 619
|||||| || |||||| |||||||||||||||||||| || |||||||| ||| | ||||
Sbjct 178 GGTGTT-TTCGTCTTTGAAATGTTTCAGCCTGACTTCTTTGAGAAATTGCTAGCT-GAGG 235
Query 620 TAGAAAATATCGGAAAGTGGGTTCATGAGACAAATTTCCCA-ATCAGGAGACCGTACCAC 678
|||| ||| || ||||||||| |||||||||||| || | |||| |||||| || |
Sbjct 236 TAGAGAATTTCAGAAAGTGGGCTCATGAGACAAAGTTGA-AGATCATGAGACCAAACAAA 294
Query 679 ATGAGTAAATACGGTGTTGCGTTTGTCGACTTTGGCCTGGATATCATGCTTCAGCAACTC 738
|||||||||| |||||||| | ||| ||||||||||||| ||||||||||| | ||||||
Sbjct 295 ATGAGTAAATTCGGTGTTGTGCTTGACGACTTTGGCCTGCATATCATGCTTAAACAACTC 354
Query 739 ATGGAGGAATTTCTCTTTCCTATTTGCAAAGTATTCTTCCCTGAAGAGTGTGGAGCAATG 798
|||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 355 ATGGAGGATTTTATCTTTCCTATTTGCAAAGTATTCTTCCCTAAAGAGTGTGGAGCAATG 414
Query 799 TTTGACTCTCACCATGGATATTATATTGAAAATGGTGAAGATAGGGATCCTCCATTAGGC 858
||||||||||| | ||||| || |||||||||||||||||||||| || || |||||||
Sbjct 415 TTTGACTCTCAACGTGGATCTTTTATTGAAAATGGTGAAGATAGGAATGCTGAATTAGGC 474
Query 859 T-ATCATTTAGATGATTCGGAAATAACATTGAATGTTTGTGTGAGGAAACAATTTGAGGG 917
| | ||| | || ||||| ||||||||||||||||||||| | || |||||| ||||||
Sbjct 475 TTA-CATGTGGAAGATTCAGAAATAACATTGAATGTTTGTTTAAGTAAACAAGGTGAGGG 533
Query 918 AGGGGAAATATCTTTC-ATAGGCACACGATGCTTGAGACATAAGCGA-ACAGA-CGTAAA 974
||||||||||| |||| | ||||||||||||| || ||||| | || | ||| | |||
Sbjct 534 AGGGGAAATATTTTTCGA-AGGCACACGATGCAAGAAACATATG-GATATAGATCC-AAA 590
Query 975 GCCAGAGGAA-GTTTTTCATTACTGTCAT-TCACCGGGTCAAGCTATACTTCATCGTGGC 1032
|||||||||| ||||| ||||||||||| | ||||||||||||||||||||| ||||||
Sbjct 591 GCCAGAGGAACGTTTTG-ATTACTGTCATAT-ACCGGGTCAAGCTATACTTCACCGTGGC 648
Query 1033 CGCCACCG-CCATGGTCCCAGAGCCAAC-ACACCATCTTGTTC-TCGGGCCAATATGATT 1089
||||| | ||||||| ||||||| | | ||| ||||| || | ||||||||||||||||
Sbjct 649 TGCCAC-GTCCATGGTGCCAGAGC-AGCCACAACATCTGGT-CGTCGGGCCAATATGATT 705
Query 1090 CTTTGTTGCAGAAACTCTTTGTTTAGAGAGATGGAAAAATATGAGAAAGATTTCCCAGAG 1149
||||| ||||||||||||||||| ||||||||| ||| |||||||| || |||| |||
Sbjct 706 CTTTGGTGCAGAAACTCTTTGTTCAGAGAGATGCAAACTTATGAGAAGGAATTCCGAGAC 765
Query 1150 TGGTGCAATGAATGCGCCCATgaaaagaaagaaaaggaaagccagagtcttgatgccaaa 1209
|||||| | |||||| |||||||||||||||||||||||||||| |||||| |||||||
Sbjct 766 TGGTGCGGTCAATGCGTCCATGAAAAGAAAGAAAAGGAAAGCCAGTGTCTTGCTGCCAAA 825
Query 1210 agaaagg 1216
|||||||
Sbjct 826 AGAAAGG 832
> Ahg474008 jgi|Araly1|474008|fgenesh2_kg.1__3962__AT1G48700.1
Length=904
Score = 852 bits (461), Expect = 0.0
Identities = 732/859 (85%), Gaps = 33/859 (4%)
Strand=Plus/Plus
Query 383 AATGTTCCAAAGCTAAATGGTGCAAGAAC-TATTGGC-AGAAGATAAAATCTAATTATCA 440
|||||||| | || ||| || ||||| || ||| ||| || |||||| ||| ||||||||
Sbjct 15 AATGTTCC-AGGCGAAACGGCGCAAG-ACATATAGGCAAG-AGATAATATCCAATTATCA 71
Query 441 GCCAC-TTTCTAGGGAGTTGTATAATTTTGATCCCGAATTGTTTCTGCTTCCCTCTTTCC 499
||||| |||| |||| ||||||||| ||||||| |||||||| |||||||||| ||||
Sbjct 72 GCCACGTTTCAAGGG-GTTGTATAAACTTGATCCTAAATTGTTTTTGCTTCCCTCATTCC 130
Query 500 GAAAGGCGATCAGCGAAAACACAAAGGAAAGCTTCAGACGTATCATTTCTGAACCGTTTC 559
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 131 GCAAGGCGATCAGCGAAAACACAGAGGAAAGCTTCAGACGTATCATTTCTGAACCGTTTC 190
Query 560 CTGGTGTTCTT-GTCTTTCAAATGTTTCAGCCTGACTTCATTCAGAAATTGATAGTAGAG 618
|||||||| || |||||| |||||||||||||||| ||| || |||||||| |||| |||
Sbjct 191 CTGGTGTT-TTCGTCTTTAAAATGTTTCAGCCTGAATTCTTTGAGAAATTGCTAGTTGAG 249
Query 619 GTAGAAAATATCGGAAAGTGGGTTCATGAGACAAATTTCCCAATCAGGAGACC-GTACCA 677
||||| ||| || ||||||||| |||||||| ||||||| | ||||||||||| | || |
Sbjct 250 GTAGAGAATTTCAGAAAGTGGGCTCATGAGAAAAATTTCACGATCAGGAGACCAG-ACAA 308
Query 678 CATGAGTAAATACGGTGTTGCGTTTGTCGACTTTGGCCTGGATATCATGCTTCAGCAACT 737
|| ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||
Sbjct 309 CACGAGTAAATACGGTGTTGTACTTGACGACTTTGGCCTGGATATCATGCTTAAGCAACT 368
Query 738 CATGGAGGAATTTCTCTTTCCTATTTGCAAAGTATTCTTCCCTGAAGAGTGTGGAGCAAT 797
||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct 369 CATGGAGGAGTTTATCTTTCCTATTTGCAAAGTATGCTTCCCTGAAGTGTGTGGAACAAT 428
Query 798 GTTTGACTCTCACCATGGATATTATAT-TGAAAATGGTGAAGATAGGGATCCTC-CATTA 855
||||||||||||| |||||| || || |||||||||||||||||||||| || | | |
Sbjct 429 GTTTGACTCTCACTATGGATTTT-TAACTGAAAATGGTGAAGATAGGGATGCTGACGT-A 486
Query 856 GGCTATCATTTAGATGATTCGGAAATAACATTGAATGTTTGTGTGAGGAAACAATTTGAG 915
|||| |||| | || ||||| ||| | |||||||| |||||| | || |||||| |||
Sbjct 487 GGCTTTCATGTGGAAGATTCAGAAGTGACATTGAACGTTTGTTTAAGTAAACAAGGAGAG 546
Query 916 GGAGGGGAAATATCTTTCATAGGCACACGATGCTTGAGACATAAGCGA-ACAGA-CGTAA 973
||||||||||||| |||| ||||||| ||||| || ||||| | || ||||| | ||
Sbjct 547 GGAGGGGAAATATTTTTCGCAGGCACAAGATGCAAGAAACATATG-GATACAGATCC-AA 604
Query 974 AGCCAGAGGAA-GTTTTTCATTACTGTCAT-TCACCGGGTCAAGCTATACTTCATCGTGG 1031
||||||||||| ||||| ||||||||||| | ||||||||||||||||||||| |||||
Sbjct 605 AGCCAGAGGAATGTTTTG-ATTACTGTCATAT-ACCGGGTCAAGCTATACTTCACCGTGG 662
Query 1032 CCGCCACCGCCATGGTCCCAGAGCCAACACACCATCTTGTTC-TCGGGCCAATATGATTC 1090
| |||||||||||||| ||||||||| | || |||| || | | |||||||||||||||
Sbjct 663 CTGCCACCGCCATGGTGCCAGAGCCA-CG-AC-ATCTGGT-CGTTGGGCCAATATGATTC 718
Query 1091 TTTGTTGC-AGAAACTCTTTGTTTAGAGAGATGGAAAAATATGAGAAAG-ATTTCCCAGA 1148
|||| ||| | |||||||||||||||||||||| ||| |||||| | ||| | ||||
Sbjct 719 TTTGGTGCCA-AAACTCTTTGTTTAGAGAGATGCAAACTTATGAGCCGGCATT-CTCAGA 776
Query 1149 GTGGTGCAATGAATGCGCCCATgaaaagaaagaaaaggaaagccagagtcttgatgccaa 1208
|||||| | |||| | |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 777 CTGGTGCGGTCAATGTGTCCATGAAATGAAAGAAAAGGAAAGCCAGAGTCTTGCTGCCAA 836
Query 1209 aagaaaggttattaaaaaa 1227
||||||||||| ||||||
Sbjct 837 AAGAAAGGTTAC-AAAAAA 854
> Ahg913909 jgi|Araly1|913909|Al_scaffold_0001_4163
Length=1098
Score = 726 bits (393), Expect = 0.0
Identities = 514/571 (90%), Gaps = 13/571 (2%)
Strand=Plus/Plus
Query 106 ATGGCGTTGGACGGTGACGAAACAGTCGCAGGTGGAGATTCTCAACCACCGGTGACTACT 165
|||||| |||||||||||||||| || | ||||| |||||||||||||||||||||||||
Sbjct 1 ATGGCGGTGGACGGTGACGAAACTGTTGGAGGTGAAGATTCTCAACCACCGGTGACTACT 60
Query 166 GCAGCGGCGACTACAGAGGAGAAGGCTATCGCGAGGCTGAGTCCGTTTCCTAACATGGAG 225
|| |||||||| || | |||| ||||| |||||||||||||| |||||||||||||||
Sbjct 61 GCGGCGGCGACGAC--A-GAGATGGCTACCGCGAGGCTGAGTCGGTTTCCTAACATGGAT 117
Query 226 CACATTTCTGATAACTACGGAGATCTGGAACTGGAATATAGCTCTG-CCATGTTAAGCTC 284
||||||| ||||||||||||||||||| ||||||||| |||||| | || ||||||||||
Sbjct 118 CACATTTGTGATAACTACGGAGATCTGAAACTGGAATTTAGCTC-GTCCGTGTTAAGCTC 176
Query 285 GCTAGAGAAGTACTTGCCGCCGGAAATGCTCACGGCG-ACTAGAGAAGAGAAGGCCAAAT 343
|||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 177 TCTAGAGAAGTACTTGCCGCCGGAAATGCTCACGGCGAAC-AGAGAAGCGAAGGCCAAAT 235
Query 344 TCATGTCTGACATTTTGCGCAAGTACATTTCCCGCGACGAATGTTCCAAAGCTAAATGGT 403
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 236 TCATGTCTGACATTTTGCGCAAGTACATTTCCCGTGAAGAATGTTCCAAAGCTAAATGGC 295
Query 404 GCAAGAACTATTGGCAGAAGATAAAAT-CTAATTATCAGCCACT-TTCTA-GGGAGTTGT 460
|||| |||||| |||||| ||| || | | || ||||||||||| | | | |||| | ||
Sbjct 296 GCAACAACTATAGGCAGAGGAT-AATTGCAAAATATCAGCCACTCTAC-AGGGGA-TGGT 352
Query 461 ATAATTTTGATCCCGAATTGTTTCTGCTTCCCTCTTTCCGAAAGGCGATCAGCGAAAACA 520
||||||||||||||||||||||||||||||| ||||||| || ||| ||||||||||||
Sbjct 353 GTAATTTTGATCCCGAATTGTTTCTGCTTCCCGCTTTCCGGAACGCGGTCAGCGAAAACA 412
Query 521 CAAAGGAAAGCTTCAGACGTATCATTTCTGAACCGTTTCCTGGTGTTCTTGTCTTTCAAA 580
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CTGAGGAAAGCTTCAGACGCATCATTTCTGAACCGTTTCCTGGTGTTCTTGTCTTTCAAA 472
Query 581 TGTTTCAGCCTGACTTCATTCAGAAATTGATAGTAGAGGTAGAAAATATCGGAAAGTGGG 640
||||||||||||||||| || |||| |||||| |||||||||||||| || |||||||||
Sbjct 473 TGTTTCAGCCTGACTTCTTTGAGAATTTGATACTAGAGGTAGAAAATGTCAGAAAGTGGG 532
Query 641 TTCATGAGACAAATTTCCCAATCAGGAGACC 671
|||||||||||||||||| |||||||||||
Sbjct 533 CTCATGAGACAAATTTCCCGATCAGGAGACC 563
Score = 292 bits (158), Expect = 4e-78
Identities = 194/212 (92%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 770 TATTCTTCCCTGAAGAGTGTGGAGCAATGTTTGACTCTCACCATGGATATTATATTGAAA 829
|||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||
Sbjct 575 TATTCTTCCCTGAAGAGTGTGGAGCAATGTTTGACTCTTACCATGGATTTTTTATTGAAA 634
Query 830 ATGGTGAAGATAGGGATCCTCCATTAGGCTATCATTTAGATGATTCGGAAATAACATTGA 889
||| ||||||||| ||| ||||||||||||||||| | |||||||| ||||||||||| |
Sbjct 635 ATGATGAAGATAGAGATGCTCCATTAGGCTATCATGTGGATGATTCAGAAATAACATTTA 694
Query 890 ATGTTTGTGTGAGGAAACAATTTGAGGGAGGGGAAATATCTTTCATAGGCACACGATGCT 949
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 695 ATGTTTGTGTGAGGAAACAATTTGAGGGAGGGGAAATATCTTTCGTAGGCACACGATGCC 754
Query 950 TGAGACATAAGCGAACAGACGTAAAGCCAGAG 981
|| |||||||| |||| | |||||||||||
Sbjct 755 AGAAACATAAGCAAACAAATATAAAGCCAGAG 786
Score = 244 bits (132), Expect = 1e-63
Identities = 206/239 (86%), Gaps = 16/239 (7%)
Strand=Plus/Plus
Query 980 AGGAAGTTTTTCA-TTACTGTCATTCACCGGGTCAAGCTATACTTCATCGTGGCCGCCAC 1038
||||||||||| | |||| |||| ||| ||||||||||||||||| ||||||||||||
Sbjct 836 AGGAAGTTTTT-AGGTACTTTCATACACAAGGTCAAGCTATACTTCACCGTGGCCGCCAC 894
Query 1039 CGCCATGGTCCCAGAGCCAACACACCATCTTGTTCTCGGGCCAATATGATTCTTTGT-TG 1097
||||||||| ||||||||| | |||||||||||| |||||||||||||||||||| | ||
Sbjct 895 CGCCATGGTGCCAGAGCCACCGCACCATCTTGTTATCGGGCCAATATGATTCTTT-TCTG 953
Query 1098 CAGAAACTCTTTGTTTAGAGAGATGGAAAAATATGAGAAAGATTTCCCAGAGTGGTGCAA 1157
|||||||||||||||||||||||||||| ||| |||| || |||||||||||||||
Sbjct 954 TAGAAACTCTTTGTTTAGAGAGATGGAAACTTATAAGAAGGAATTCCCAGAGTGGTGC-- 1011
Query 1158 TGAATGCGCCCATgaaaagaaagaaaaggaaagccagagtcttgatgccaaaagaaagg 1216
| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1012 ------C----ATGAAAAGAAAGAAAAGGAAAGCCAGAGTCTTGCTGCCAAAAGAAAGG 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57820991910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5