BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48745.1
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474010 jgi|Araly1|474010|fgenesh2_kg.1__3964__AT1G48745.1 955 0.0
> Ahg474010 jgi|Araly1|474010|fgenesh2_kg.1__3964__AT1G48745.1
Length=718
Score = 955 bits (517), Expect = 0.0
Identities = 672/741 (91%), Gaps = 34/741 (5%)
Strand=Plus/Plus
Query 1 ACGTAAAACCATCTACAATTTTATATACTTTGAAtttttttATTAAAATTGTAGATAAAT 60
||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||
Sbjct 1 ACGTAAAACCATCTACATTTTTATATAGTTTGAA-AAAAGTATTAAAATTGTAGATAAAT 59
Query 61 ATAAAAATATAAA-TCGTATTCTTTAAAATTCATTCATCTTTAATCTTTTTTGCTTCAAG 119
||||||||||||| |||| |||||||||| |||||||||||||||||||||| |||||||
Sbjct 60 ATAAAAATATAAATTCGTCTTCTTTAAAAATCATTCATCTTTAATCTTTTTT-CTTCAAG 118
Query 120 AACACGATGAGCGACAATAAAAATCTTCTCCTGAGACGAATGG---AAGAAAAAGATCGA 176
|||||||||||||| || |||| |||||||||||||| ||||| ||||| ||||||||
Sbjct 119 AACACGATGAGCGATAACAAAACTCTTCTCCTGAGACAAATGGAACAAGAAGAAGATCGA 178
Query 177 GCAAGAAAACAAATCTCTGTTTTATCCTCCAAAAGATCCCAAAC--C--A--CAAACGCA 230
||||||||||||||||||||||| |||||||||||||||||||| | | ||||||||
Sbjct 179 GCAAGAAAACAAATCTCTGTTTTGTCCTCCAAAAGATCCCAAACTGCAAACGCAAACGCA 238
Query 231 AACGCAGCTGTTACAGCTCCGTCCGAGGTGGCGTTTAACGTTTGTTGTTTATGTGTTTAT 290
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AACGCAGCTGTAACAGCTCCGTCCGAGGTGGCGTTTAACGTTTGTTGTTTATGTGTTTAT 298
Query 291 TGTCCTCTTTGTGTTCTTTGGTGCTGCATCAAACAGCCTTGTACAATTGGATGGAGAGCC 350
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGTCCTCTTTGCGTTCTTTGGTGCTGCATCAAACAGCCTTGTACAATTGGATGGAGAGCC 358
Query 351 ATTCTAAACGCCAAACGCAGATTAAGCGGTTGCAGCGGCTGCGGTAGAAGCTTTAGCAGG 410
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATTCTAAACGCTAAACGCAGATTAAGCGGTTGCAGCGGCTGCGGTAGAAGCTTTAGCAGG 418
Query 411 AGGGTTTTGGCTGCTGATTATTCGTCTTTTTCGGATATTGATTCTGATGATGTGAATTGC 470
||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 419 AGGGTTTTGGCAGCAGATTATTCGTCGTTTTCGGATATTGATTCCGATGATGTGAATTGC 478
Query 471 AAAGCTCATAATTGCTCAACACGAAATCGGTGACTACAAAAAATT-TATTGAGTTTCATG 529
||||||||||||||||||| |||||| |||||| || |||| || |||||||||| ||
Sbjct 479 AAAGCTCATAATTGCTCAAAACGAAACCGGTGATTATAAAAT-TTCTATTGAGTTTTATA 537
Query 530 AATTTCCCAAACTTCCTTTTTCTCTGATCTAAACGCCGACGCAAAACGCTGGAGTTGACT 589
|||||||||||||| | || | || ||| |||||||||||||||||||||||
Sbjct 538 AATTTCCCAAACTT--T----CT---A---AA-CGCTGACGCAAAACGCTGGAGTTGACT 584
Query 590 TCATAGTTCATAATGCTGAGTTGATGAAAAATCTCGAGATTAAGCTCTATTATTTCGATA 649
||||| || |||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 585 TCATA----AT---GCTGAGTTAATGAAAAATATCGAGATTAAGCTCTATTATTTCGATA 637
Query 650 ATTTAGAGGTTAAAGATGTTGTTGTGATTGATTATATAAAGATGTATATATTACTTGGTG 709
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 ATTTAGAGAATAAAGATGTTGTTGTGATTGATTATATAAAGATGTATATATTACTTGGTG 697
Query 710 AAGAATAAAGTTGtttttttt 730
| |||||||||||||||||||
Sbjct 698 AGGAATAAAGTTGTTTTTTTT 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27105393987
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5