BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48760.1
Length=3383
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474012 jgi|Araly1|474012|fgenesh2_kg.1__3966__AT1G48760.2 4143 0.0
Ahg341963 jgi|Araly1|341963|fgenesh1_pg.C_scaffold_3001726 1879 0.0
> Ahg474012 jgi|Araly1|474012|fgenesh2_kg.1__3966__AT1G48760.2
Length=3258
Score = 4143 bits (2243), Expect = 0.0
Identities = 2857/3136 (91%), Gaps = 112/3136 (4%)
Strand=Plus/Plus
Query 142 TCAATGTCGTCGTCTTCCACTTCTATAATGGACAACTTGTTCCAACGAAGTCTCGAGGAT 201
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 24 TCAATGTCTTCGTCTTCCACTTCTATTATGGACAACTTATTCCAACGAAGTCTCGAGGAT 83
Query 202 CTAATCAAAGGCTTTCGTCTCCAGCTTCTCGGAGAATCCAATTTCATTTCTAGAGCCGTT 261
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 84 CTGATCAAAGGCTTTCGTCTCCAGCTTCTCGGAGAATCCAATTTCATTTCTAGAGCC-TT 142
Query 262 -GAAGAAATCCGCCGCGAGATCAAAGCCACAGATCTCTCAACTAAATCCACCGCTCTTCA 320
|||||||||||||| ||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 143 AGAAGAAATCCGCCGTGAGATCAAATCCACCGATCTCTCCACTAAATCCACCGCTCTTCA 202
Query 321 CAAGCTCTCTTACCTCGCCGCACTTCACGGCGTCGACATGTCTTGGGCCGCGTTTCACGC 380
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 203 CAAACTCTCTTACCTCGCCGCACTTCACGGCGTCGACATGTCTTGGGCGGCGTTTCACGC 262
Query 381 CGTAGAAGTCGTGTCTTCTTCACGATTCCAACACAAGAGGATCGGTTACCAAGCAATTAC 440
||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 263 CGTCGAAGTCGTGTCCTCTTCACGATTCCAGCACAAGAGGATCGGTTACCAAGCAATTAC 322
Query 441 TCAATCATTCAACGATCAGACCTCGGTTATGCTTCTGATCACTAACCAGGTGAGAAAGGA 500
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 323 TCAATCATTCAACGATCAGACCTCGGTTATGCTTCTGATCACTAACCAGGTGCGTAAGGA 382
Query 501 TTTGAATAGTGCTAATGAATACGAGGTTAGTCTAGCTTTGGAATGTTTGTCTAGGATCGG 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 383 TTTGAATAGTGCTAATGAATACGAGGTTAGTCTAGCTTTGGAATGTTTGTCTAGGATTGG 442
Query 561 AACTCATGACCTAGCTAGAGATTTGACTCCTGAAGTGTTTACTCTCCTGGGTAGTAGTAA 620
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 443 AACTCATGACCTAGCTAGAGATTTGACTCCTGAAGTGTTTACTCTCTTGGCTAGTAGTAA 502
Query 621 ATCTTTCGTGAAGAAGAAAGCAATTGGTGTGGTTTTGAGGGTTTTTGAGAAGTATCATGA 680
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 503 ATCTTTCGTTAAGAAGAAAGCAATTGGAGTGGTTTTGAGGGTTTTTGAGAAGTATCATGA 562
Query 681 TGCTGTTAAGGTGTGTTTTAAACGTCTAGTTGAGAATCTTGAAACCTCTGATCCGCAGAT 740
||| ||||| ||||||||||||||||| || |||||| |||||| |||| ||||||||||
Sbjct 563 TGCGGTTAATGTGTGTTTTAAACGTCTTGTCGAGAATTTTGAAAGCTCTAATCCGCAGAT 622
Query 741 TCTGTCTGCTGTAGTTGGAGTGTTCTGTGAGCTTGCTACAAAGGATCCTCAGTCTTGTCT 800
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 623 TCTGTCTGCTGTAGTTGGAGTTTTCTGTGAGCTTGCCACAAAGGATCCTCAATCTTGTCT 682
Query 801 TCCTTTAGCTCCTGAGTTCTATAAAGTATTGGTTGATTCAAGGAATAATTGGGTTCTGAT 860
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 683 TCCTTTAGCTCCTGAGTTCTATAAAGTATTGGTTGATTCAAGGAACAATTGGGTTCTGAT 742
Query 861 CAAGGTTCTTAAGATATTTGCTAAGTTGGCCTTGATTGAACCGAGATTGGGTAAGAAGGT 920
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 743 CAAGGTTCTTAAGATATTTGCTAAGTTGGCCTCGATTGAGCCGAGATTGGGTAAGAAGGT 802
Query 921 TGCTGAGCCGATTTGTGAACATATGAGGAGGACTGTGGCAAAGTCTCTGGTTTTTGAGTG 980
||||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 803 GGCTGAGCCGATCTGTGAACATATGAGGAGGACAGTGGCAAAGTCTCTTGTGTTTGAGTG 862
Query 981 TGTTCGAACCGTGGTGAGTAGCTTGAGTGATAACGAAGCGGCTGTGAAACTTGCTGTTGC 1040
|||| |||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 863 TGTTAGAACTGTGGTGAGTAGCTTGAGCGATAACGAAGCAGCTGTGAAACTTGCGGTTGC 922
Query 1041 AAAGATCCGGGAGTTTCTGGTGGAAGATGATCCAAATCTTAAGTATCTCGGTCTTAACGC 1100
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 923 TAAGATCCGGGAGTTTCTGGTGGAAGATGATCCAAATCTCAAGTATCTCGGTCTTAACGC 982
Query 1101 CTTGTCGATTGTTGCTCCTAAGCATTTGTGGGCAGTTTTGGAGAACAAAGAGGT-AGTCG 1159
|||||| ||||||||||| |||||||||||||||||||||||||||||||| || | |||
Sbjct 983 CTTGTCCATTGTTGCTCCAAAGCATTTGTGGGCAGTTTTGGAGAACAAAGAAGTTA-TCG 1041
Query 1160 TCAAGGCTATGAGCGATGAGGATCCAAATGTTAAACTCGAGGCATTGCATCTCTTAATGG 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 TCAAGGCTATGAGCGATGAGGATCCAAATGTTAAACTCGAGGCATTGCATCTCTTAATGG 1101
Query 1220 CA-ATGGTGAATGAAGATAATGTGTCGGAAATCTCCAGGATTCTTATGAATTATGCACTC 1278
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1102 -AGATGGTGAATGAAGATAATGTATCGGAAATCTCCAGGATTCTTATGAATTATGCACTC 1160
Query 1279 AAGTCAGACCCTTTGTTCTGCAATGAGATTAT-TTTTTCTGTCTTATCGGCATGCTCCAG 1337
|| |||||||| ||||||||||| |||||||| ||||| ||||||||| |||||||||||
Sbjct 1161 AAATCAGACCCATTGTTCTGCAACGAGATTATATTTTT-TGTCTTATCAGCATGCTCCAG 1219
Query 1338 GAATGCATATGAGATCATAGTTGACTTTGATTGGTATTTGTCTCTTCTTGGTGAAATGGC 1397
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1220 GAATGCATATGAGATCATAGTTGACTTTGATTGGTATGTGTCTCTTCTTGGTGAGATGGC 1279
Query 1398 TAGAATCCCACATTGTCAAAGAGGGGAAGATATTGAGCATCAGTTGATCGATATCGGTAT 1457
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1280 TAGAATCCCACATTGTCAAAGAGGGGAAGAGATTGAGCATCAGTTGATCGATATCGGTAT 1339
Query 1458 GAGGGTCAGAGATGCTAGACCACAGCTAGTCCGTGTTTCTTGGGCACTGCTCATTGATCC 1517
||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1340 GAGAGTCAGAGATGCCAGACCGCAGCTAGTCCGTGTTTCTTGGGCACTTCTCATTGATCC 1399
Query 1518 TGCATTGCTCGGTAACTTGTTCTTACACCCTATACTATCTGCAGCTGCGTGGGTTTCAGG 1577
|||| | ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||
Sbjct 1400 TGCACTACTCGGTAACTTGTTCTTGCACCCGATATTATCCGCAGCTGCGTGGGTTTCAGG 1459
Query 1578 TGAATACGTTGAGTTCTCTAAGAATCCGTATGAAACTGTGGAGGCGCTTCTGCAACCACG 1637
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1460 GGAATATGTTGAATTCTCTAAGAATCCATATGAAACTGTGGAGGCGCTTCTGCAACCACG 1519
Query 1638 AACTGATCTCTTACCCCCCTCCATAAAAGCTATCTATATACATTCAGCTTTCAAAGTTCT 1697
|||| |||||| || |||||||||| |||| |||| |||||||||||||||||||||||
Sbjct 1520 CACTGGTCTCTTGCCACCCTCCATAAGAGCTGTCTACATACATTCAGCTTTCAAAGTTCT 1579
Query 1698 TGTCTTCTGTCTGGGGTCTTACTTCTCGTCCCAGGAACCCACTTCGTCATCCTTGGCTCA 1757
|||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1580 TGTCTTCTGTCTCGGGTCTTACTTCTCGTCTCAGGAAACCACTTCGTCATCCTTGGCTCA 1639
Query 1758 GGAATCAAGTTCTGGCTCTTTGT-TGGTGAATGTTTTCACACATGAATCTATATTGAGTC 1816
||| ||||||||||| |||| || | |||||| ||||||||||| ||||||||||| ||
Sbjct 1640 GGAGTCAAGTTCTGGTTCTTCGTCTA-TGAATGCTTTCACACATGGATCTATATTGAATC 1698
Query 1817 TGGTGAATGTGATTGAGCTTGGTTTGGGGCCTTTATCTGGATAC-CATGATGTGGAAGTG 1875
|||||||||||||||||| || ||||||||| ||||||| | || |||||||||||||||
Sbjct 1699 TGGTGAATGTGATTGAGCGTGATTTGGGGCCGTTATCTGAA-ACACATGATGTGGAAGTG 1757
Query 1876 CAGGAGAGAGCTAAGAATGTTTTAGGATACATCAGTGTGATAAAGCAAGAAATAGCTGAG 1935
|||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct 1758 CAGGAGAGAGCTAAGAATGTTTTAGGATTCATCGGTATGATAAAGCAAGAAATAGCTGAG 1817
Query 1936 CAATTAAATCTCCAAGACAACGAAACAGAAGCTTCTAGAGTTACAGCATTCATGGAAGAT 1995
||||||| ||||||||||| ||||||||| |||||||||| || |||||||||||||||
Sbjct 1818 AAATTAAACCTCCAAGACAATGAAACAGAATCTTCTAGAGTCACGGCATTCATGGAAGAT 1877
Query 1996 GTGTTCTCAGAAGAGTTTGGTCCTATTTCTGCAACTGCACAAGAAAAGGTTTGTGTACCG 2055
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1878 GTGTTCTCAGAAGAGTTTGGTCCTGTTTCTGCAACTGCACAAGAAAAGGCTTGTGTACCG 1937
Query 2056 GATGGGTTAGAGCTGAAAGAGAATCTCGGGGATCTGGAGGAGATCTGTGGGGAACATCTT 2115
||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||
Sbjct 1938 GATGGGTTAGAGCTGAAAGAGAATCTCGGGGATCTAGAAGAGATCTGTGGGGAATTTCTT 1997
Query 2116 AAACCCGTGGAATCGGATTCGGTTTCATACACAGACAAGATCAGCTTCTCTGTCTCCAAA 2175
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998 AAACCCGTGGAATCTGAGTCGGTTTCATACACAGACAAGATCAGCTTCTCTGTCTCCAAA 2057
Query 2176 CTCAGAATCAGAGATCAACAAGAAGCCACTTCATCTTCATCTCCTCCACATGAAGCTTCA 2235
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2058 CTCAGAATCAGAGATCAACAAGAAACCTCTTCATCTTCATCTCCTCCACATGAAGCTTCA 2117
Query 2236 TCTCTGCTAGCTGAACACCGTAAACGCCATGGAATGTATTATCTTACTTCTCAAAAGGAG 2295
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 2118 TCTCTGCTAGCTGAACACCGCAAACGCCATGGCATGTATTATCTTACTTCTCAAAAGGAG 2177
Query 2296 GATCAAGATAGCAACGGCACGTCA-AGCGATTATCCTCTGGCAAATGAATTAGCAAACGA 2354
|||| |||||||||| ||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 2178 GATCCAGATAGCAACAGCACG-CACAGCGATTATCCTCTGGCAAATGAATTAGCGAACGA 2236
Query 2355 GATATCCCAGGATTCATTTAACCCCAAGAGAAAGCCAAACCAATCTAAACC-ACGGCCTG 2413
||||||||||||| |||||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 2237 GATATCCCAGGATCCATTTAACCCCAAGAGAAAGCCGAACCAATCTAAACTGA-GGCCTG 2295
Query 2414 TAGTGGTGAAACTAGACGATGGAGATGAATCAAGAATCACTCCTCAAGCAAAAACAAATA 2473
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2296 TAGTGGTGAAACTAGATGATGGAGATGAATCAAGAATCACTCCTCAAGCAAAAAAAAATA 2355
Query 2474 TACAGACTGCTAATGATGATGAATCTTTGTCCCGAGCGATCCAAAGCGCTCTTCTGGTAA 2533
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2356 TACAGACTGCTAAGGACGATGAATCTTTGTCCCGAGCGATCCAAAGCGCTCTTCTGGTAA 2415
Query 2534 AGAACAAGGGAAAAGAAAAAGATAGGTACGAGGGAAATCCGAATTCAGGACAACAGgaaa 2593
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 2416 AGAACAAGGGAAAAGAGAAAGACAGGTATGAGGGAAATCCGAATTCAGGACAACAGGAAA 2475
Query 2594 aagaagagagctcgaggatagaaaatcatcagaactcagagaa---gaagaagaagaaga 2650
||||||| |||||||| || |||||||| |||||||||||||| ||||||||||||||
Sbjct 2476 AAGAAGAAAGCTCGAGAATTGAAAATCACCAGAACTCAGAGAATAAGAAGAAGAAGAAGA 2535
Query 2651 aaaagaagaagaagGGAGAGGGAAGTAGTAAGCACAAATCACGACGGCAAAATGAAGTAG 2710
||||||||||||| |||||| | ||||||||||||| | | || ||| | | | |
Sbjct 2536 AAAAGAAGAAGAATGGAGAG--A-GTAGTAAGCACAACTG-C-AC---AAA-TCACG-A- 2584
Query 2711 CTTCTGCTTCAGAACAAGTTATAATTCCAGATTTTCTCTTGTGA-TGGAGTGAAA-AATC 2768
| || ||| | | | |||| || ||||| ||| || ||||||| || |
Sbjct 2585 -TG--GC----GAA-ATG--A-AATT-----TT--CTCTTATGAGTG-AGTGAAACAACC 2625
Query 2769 AGTTTGTGTTCTTTTAAAATATGTCTT-TGTTCATACA--GAAACCAAACAAAATGTCTT 2825
||||| |||||||||| ||| ||| || | |||||||| ||||||||||||||||| ||
Sbjct 2626 AGTTTATGTTCTTTTAGAATCTGT-TTATCTTCATACACAGAAACCAAACAAAATGTGTT 2684
Query 2826 GTGTAATTCTTTTTGTGTATAGACTTTCATGTATTGGTTTCTTGGTTTCTGTCATAATTT 2885
|||||||||| | || | | | |||| || | ||| ||| ||||||||||
Sbjct 2685 GTGTAATTCTAT--GTAT-TGG--TTTC-TG-A-------CTT--TTT--GTCATAATTT 2726
Query 2886 ATAAGAG-AGATCCGA-C-GAAACATATTTCTAAAGTATATTT---C-ATATTTTATAAG 2938
|||||| ||| || | || ||| ||| ||||||||||||| | ||||||||||||
Sbjct 2727 GTAAGAGTAGAGA-GATCCGATACA-ATT-CTAAAGTATATTTATACCATATTTTATAAG 2783
Query 2939 ATAGAAAACATAACATTCAAGCATGATGATGATaatcatcaatcatcaatcatcaatcat 2998
|| ||| |||||||||||||||||||||||||| || || | | | ||| | |
Sbjct 2784 ATGGAAGACATAACATTCAAGCATGATGATGAT---CAGCA-T--T-A-TCA-C---C-- 2829
Query 2999 catcaCTTCATTTATTATTCTAAATAGTAGTGACGAAGATAAGACC-AGCATTAACCACT 3057
|| | | ||| ||| ||||| | | ||||||||| |||||| | | ||||| | |
Sbjct 2830 CA--A-T--ATT-ATT---CTAAACATTTCTGACGAAGACAAGACCCA-CTTTAACTATT 2879
Query 3058 ATAATCAGCGAAACTTGTCACTAATTAATCATGATTAACATTTCCTTAACAGCTT-GGGG 3116
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 2880 ATAATCAGCGAAACTTGTCACTAACTAATCATGATTAACATTTCCTTAACA-CTTTGGGG 2938
Query 3117 AAGGAATCTTGCAACTGTTGGAGACTTTCCTTGCGTTAGGGGAGCTAACGTATTGGCGGA 3176
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2939 AAGCTATCTTGCAACTGTTGGAGACTTTCCTGGCGTTAGGGGAGCTAACGTATTGGCGGA 2998
Query 3177 GG-GTAGGGTTCCTCATGTACCCACAAAGGCATGGCTGCTGCTCTCTCAGCTTTGTGCAA 3235
|| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2999 GGAG-AGGGTTCCTCATGTACCCACAAAGGCATGGCTGCTGCTCTCTCAGCTTTGCGCAA 3057
Query 3236 CACGCCTCCGATGGCG 3251
|| |||||||||||||
Sbjct 3058 CAGGCCTCCGATGGCG 3073
Score = 180 bits (97), Expect = 7e-44
Identities = 128/141 (91%), Gaps = 9/141 (6%)
Strand=Plus/Plus
Query 3251 GCTGCATAGGCGAGCACGTCACCCCTTCTGCCACC--G-----GG--ACCGTCAAAAGGA 3301
||||||| ||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 3110 GCTGCATCGGCGAGCACGTCACCCCTTCTGCCACCGGGATTTTGGCCACCGTCAAAAGGA 3169
Query 3302 GAATCGCCGCCGCCAGAGCTAAAACGGAAACCCACATCACCTTCACCATTTTTCTTCTTC 3361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3170 GAATCGCCGCCGCGAGAGCTAAAACGGAAACCCACATCACCTTCACCATTTTTCTTCTTC 3229
Query 3362 GTTGATTCTCTGTTTGTGTTT 3382
||||||||||| ||||| |||
Sbjct 3230 GTTGATTCTCTTTTTGTATTT 3250
> Ahg341963 jgi|Araly1|341963|fgenesh1_pg.C_scaffold_3001726
Length=2661
Score = 1879 bits (1017), Expect = 0.0
Identities = 1930/2358 (82%), Gaps = 114/2358 (5%)
Strand=Plus/Plus
Query 152 CGTCTTCCACTTCTATAATGGACAACTTGTTCCAACGAAGTCTCGAGGATCTAATCAAAG 211
||||||| | ||| | ||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 5 CGTCTTCAAATTCGCTCATGGACAACTTGTTCCAGCGAAGCCTCGAGGATCTGATCAAAG 64
Query 212 GCTTTCGTCTCCAGCTTCTCGGAGAATCCAATTTCATTTCTAGAGCCGTT-GAAGAAATC 270
| || | | | | ||||||||||||| |||| |||||| | || || ||||| |||
Sbjct 65 G---TC-T-T-C-G--TCTCGGAGAATCCTTTTTCCTTTCTAAATCC-TTAGAAGACATC 114
Query 271 CGCCGCGAGATCAAAGCCACAGATCTCTCAACTAAATCCACCGCTCTTCACAAGCTCTCT 330
|||||||| |||||| | || |||||||| |||||||||| ||| ||||| || |||||
Sbjct 115 CGCCGCGAAATCAAATCAACGGATCTCTCCACTAAATCCATCGCGCTTCAGAAACTCTCC 174
Query 331 TACCTCGCCGCACTTCACGGCGTCGACATGTCTTGGGCCGCGTTTCACGCCGTAGAAGTC 390
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct 175 TACCTCGCCGCACTCCACGGCGTCGATATGTCTTGGGCAGCGTTTCACGCCGTCGAGGTC 234
Query 391 GTGTCTTCTTCACG-ATTCCAACACAAGAGGATCGGTTACCAAGCAATTACTCAATCATT 449
||||| || || || || | | ||||| ||||||||||| || |||||||| |||||
Sbjct 235 GTGTCCTCATCTCGCTTTTC-GGATAAGAGAATCGGTTACCACGCCATTACTCAGTCATT 293
Query 450 CAACGATCAGACCT-CGGTTATGCTTCTGATCACTAACCAGGT--GAGAAAGGATTTGAA 506
||||||||||| || ||||| ||||||||||||| |||||| | | |||| ||||||||
Sbjct 294 CAACGATCAGA-CTCCGGTTCTGCTTCTGATCACAAACCAGCTCCG-GAAA-GATTTGAA 350
Query 507 TAGTGCTAATGAATACGAGGTTAGTCTAGCTTTGGAATGTTTGTCTAGGATCGGAACTCA 566
|||| | ||||| || ||||| ||||||||| ||||||||||||||||||| |||||| |
Sbjct 351 TAGTTCGAATGAGTATGAGGTGAGTCTAGCTCTGGAATGTTTGTCTAGGATTGGAACTGA 410
Query 567 TGACCTAGCTAGAGATTTGA-CTCCTGAAGTGTTTACTCTCCTGGGTAGTAGTAAATCTT 625
||| |||||||| ||||| | || |||| || ||||| ||| | ||||||||||| |||
Sbjct 411 TGATCTAGCTAGGGATTTAACCT-CTGAGGTTTTTACGCTCTTAGGTAGTAGTAAGGCTT 469
Query 626 TCGTGAAGAAGAAAGCAATTGGTGTGGTTTTGAGGGTTTTTGAGAAGTATCATGATGCTG 685
| || ||||||||||| ||||||||||||||||||||||| || ||||| || |||||||
Sbjct 470 TGGTTAAGAAGAAAGCTATTGGTGTGGTTTTGAGGGTTTTCGATAAGTACCACGATGCTG 529
Query 686 TTAAGGTGTGTTTTAAACGTCTAGTTGAGAATCTTGAAACCTCTGATCCGCAGATTCTGT 745
||||||| |||||||| || || || |||| ||| || | ||||||||||||||||||||
Sbjct 530 TTAAGGTATGTTTTAAGCGCCTTGTCGAGAGTCTGGAGAGCTCTGATCCGCAGATTCTGT 589
Query 746 CTGCTGTAGTTGGAGTGTTCTGTGAGCTTGCTACAAAGGATCCTCAG-TCTTGTCTTCCT 804
| ||||| ||||||||||||||||| || | ||||| ||||| || |||| |||||||
Sbjct 590 CAGCTGTGGTTGGAGTGTTCTGTGAACTCACCACAAAAGATCC-AAGATCTTATCTTCCT 648
Query 805 TTAGCTCCTGAGTTCTATAAAGTATTGGTTGATTCAAGGAATAATTGGGTTCTGATCAAG 864
||||||||||| || || ||| | || |||||||| ||||| ||||||| ||||||||||
Sbjct 649 TTAGCTCCTGAATTTTACAAAATTTTTGTTGATTCGAGGAACAATTGGGATCTGATCAAG 708
Query 865 GTTCTTAAGATATTTGCTAAGTTGGCCTTGATTGAACCGAGATTGGGTAAGAAGGTTGCT 924
|||||||| ||||||||||||||||| ||| |||| || || |||| ||||||||| |||
Sbjct 709 GTTCTTAAAATATTTGCTAAGTTGGCTTTGGTTGAGCCTAGGTTGGCTAAGAAGGTGGCT 768
Query 925 GAGCCGATTTGTGAACATATGAGGAGGACTGTGGCAAAGTCTCTGGTT-TTTGAGTGTGT 983
|| || || ||||||| ||||||||||||||||| ||||||| | ||| ||||||||| |
Sbjct 769 GATCCAATCTGTGAACTTATGAGGAGGACTGTGGGAAAGTCT-TTGTTGTTTGAGTGTAT 827
Query 984 TCGAACCGTGGTGAGTAGCTTGAGTGATAACGAAGCGGCTGTGAAACTTGCTGTTGCAAA 1043
| |||||||||||||||||||||| ||| | ||| | ||| |||||||||||||||||||
Sbjct 828 TAGAACCGTGGTGAGTAGCTTGAGCGATCAGGAAACAGCTTTGAAACTTGCTGTTGCAAA 887
Query 1044 GATCCGGGAGTTTCTGGTGGAAGATGATCCAAATCTTAAGTATCTCGGTCTTAACGCCTT 1103
||| ||||||||||| ||||| ||||||| ||||| ||||| ||||||||| | |||||
Sbjct 888 GATTCGGGAGTTTCTTGTGGACGATGATCGTAATCTCAAGTACCTCGGTCTTCATGCCTT 947
Query 1104 GTCGATTGTTGCTCCTAAGCATTTGTGGGCAGTTTTGGAGAACAAAG-AGGTAGTCGTCA 1162
||| ||||||||||| ||||||||||||||||||||||||||||||| || | |||||||
Sbjct 948 GTCAATTGTTGCTCCAAAGCATTTGTGGGCAGTTTTGGAGAACAAAGAAGCT-GTCGTCA 1006
Query 1163 AGGCTATGAGCGATGAGGATCCAAATGTTAAACTCGAGGCATTGCATCTCTTAATGGCAA 1222
||||| | |||||||||||||||||||||||||||||||| |||||||| |||||| |||
Sbjct 1007 AGGCTCTAAGCGATGAGGATCCAAATGTTAAACTCGAGGCTTTGCATCTTTTAATGTCAA 1066
Query 1223 TGGTGAATGAAGATAATGTGTCGGAAATCTC-CAGGATTCTTATGAATTATGC-ACTCAA 1280
|||||||||||||||||||||| || || || | ||||||||||||||||||| | | ||
Sbjct 1067 TGGTGAATGAAGATAATGTGTCTGAGATTTCTC-GGATTCTTATGAATTATGCTA-TTAA 1124
Query 1281 GTCAGACCCTTTGTTCTGCAATGAGATTATTTTTTCT-GTCTTATC-GGCATGCTCCAGG 1338
||| ||||||||||| ||||| |||||||| |||| || || | |||||||||| ||
Sbjct 1125 GTCTGACCCTTTGTTTTGCAACGAGATTATAGCTTCTATTC-TA-CTGGCATGCTCCCGG 1182
Query 1339 AA-TGCATATGAGATCATAGTTGACTTTGATTGGTATTTGTCTCTTCTTGGTGAAATGGC 1397
|| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1183 AACT-CATATGAGATCATAGTTGACTTTGATTGGTATTTGTCTCTTCTTGCTGAAATGGC 1241
Query 1398 TAGAATCCCACATTGTCAAAGAGGGGAAGATATTGAGCATCAGTTGATCGATATCGGTAT 1457
||||||||||||||||||||||||| |||| |||| |||||||||||| ||||| ||||
Sbjct 1242 TAGAATCCCACATTGTCAAAGAGGGCAAGAAATTGGGCATCAGTTGATTGATATTGGTAC 1301
Query 1458 GAGGGTCAGAGATGCTAGACCACAGCTAGTCCGTGTTTCTTGGGCACTGCTCATTGATCC 1517
|||||||| ||||||||||| ||||||| ||||||||| | || ||||| ||||||||
Sbjct 1302 GAGGGTCAAAGATGCTAGACTGGAGCTAGTTCGTGTTTCTCGAGCGCTGCTTATTGATCC 1361
Query 1518 TGCATTGCTCGGTAA-CTTGTTCTTACACCCTATACTATCTGCAGCTGCGTGGGTTTCAG 1576
||||||||| ||||| | |||||| ||||| ||| | ||||| ||||| |||| |||||
Sbjct 1362 TGCATTGCTTGGTAATCA-GTTCTTGCACCCGATATTGTCTGCTGCTGCTTGGGCTTCAG 1420
Query 1577 GTGAATACGTTGAGTTCTCTAAGAATCCGTATGAAACTGTGGAGGCGCTTCTGCAACCAC 1636
| ||||| || ||||||||||||| || ||||||| || |||||||||||||||||||
Sbjct 1421 GGGAATATGTCGAGTTCTCTAAGACCCCTTATGAAATTGCAGAGGCGCTTCTGCAACCAC 1480
Query 1637 GAACTGATCTCTTACCCCCCTCCA-TAAAAGCTATCTATATACATTC-AGCTTTCAAAGT 1694
| ||| ||||||| | || || | | | ||| ||||| |||||||| | ||||||||||
Sbjct 1481 GTACTTCTCTCTTAGCACCTTC-AGTTAGAGCAATCTACATACATTCTA-CTTTCAAAGT 1538
Query 1695 TCTTGTCTTCTGTCTGG-GGTCTTACTTCTC-GTCCCAGGAACCCACTTCGTCATCC-TT 1751
|||||||||| |||| | ||| | ||||||| | ||||||| |||||||| || ||| ||
Sbjct 1539 TCTTGTCTTCAGTCTCGCGGTGT-ACTTCTCAG-CCCAGGAGCCCACTTCCTC-TCCCTT 1595
Query 1752 GGCTCAGGAATC-A--AGTTCTGGCTCTTTGTTGGTGAATGTTTTCACACATGAATCTAT 1808
| | |||| || | || |||||||||| |||||||| | ||||| | |||||||
Sbjct 1596 GTTTGAGGAGTCTACTAGCTCTGGCTCTTCACCGGTGAATGGTATCACATACAAATCTAT 1655
Query 1809 ATTGAGTCTGGTGAATGTGATTGAGCTTGGTTTGGGGC-CTTTATCTGGATACCAT-GAT 1866
|| |||||||||||| | ||||||||||| || | | | |||||||| ||| | |||
Sbjct 1656 ATCAAGTCTGGTGAATATAATTGAGCTTGGGCTGTG-CTCGTTATCTGGG-ACCCTAGAT 1713
Query 1867 GTGGAAGTGCAGGAGAGAGCTAAGAATGTTTTAGGATACATCAGTGTGATAAAGCA-AGA 1925
|| ||||||||||||||||||||||| |||||||||| |||| || ||||||| || | |
Sbjct 1714 GTTGAAGTGCAGGAGAGAGCTAAGAACGTTTTAGGATTCATCGGTATGATAAAACACA-A 1772
Query 1926 AATAGCTGAGCAATTAA--ATCTCCAAGACAACGAAACAGAAGCTTCTAGAGTTACAGCA 1983
|||||| ||| || ||| | ||| |||| | |||||||| |||||||||| | ||||
Sbjct 1773 AATAGCCGAGAAAGTAACCA-CTC-AAGAGAGTGAAACAGAGGCTTCTAGAGCTGTAGCA 1830
Query 1984 TTCATGGAAGATGTGTTCTCAGAAGAGTTTGGTCCTATTT-CTGCAACTGCACAAGAAAA 2042
|||||||||||||| |||||||||||| ||| || | || || |||||||||| |||||
Sbjct 1831 TTCATGGAAGATGTTTTCTCAGAAGAGCTTGACCC-AGTTACTTCAACTGCACAGGAAAA 1889
Query 2043 GGTTTG-TGTACCGGATGGGTTAGAGCTGAAAGAGAATCTCGGGGATCTGGAGGAGATCT 2101
||| | | ||| ||||||||||||||||||||| ||| | |||||| | ||||| |
Sbjct 1890 AGTTCCCT-TGCCGCATGGGTTAGAGCTGAAAGAGAGTCTTGAAGATCTGCAAGAGATTT 1948
Query 2102 GTGGGGAACATCTTAAACCCGTGG---A---A--T-CGGATTCG-----GTT-TCATACA 2146
| || ||| ||| ||||| |||| | | | | |||| ||| || | |
Sbjct 1949 GCGGAGAATTTCTGAAACCAGTGGTGGACTCAAATTCAAATTCTAATTCGTTCTCTTCCT 2008
Query 2147 CAGACAAGATCAGCTTCTCTGTCTCC-AAACTCAGAATCAGAGATCAACAAGAAGCCACT 2205
|||| || |||||||||||||| | | ||||| |||||||| |||||| |||||||| |
Sbjct 2009 CAGAAAATATCAGCTTCTCTGT-TGCTAAACTTAGAATCAGTGATCAAGAAGAAGCCTCA 2067
Query 2206 TCATCTTCATC-TC-C-TCCACATGAAGCTTCATCTCTG-CTAGCTGAACACCGTAAA-C 2260
|||||||| || || | || | |||| || |||| || || ||||||||| | ||| |
Sbjct 2068 TCATCTTCTTCATCTCATCTGCCTGAATCTGCATC-CTTACTTGCTGAACACAG-AAAGC 2125
Query 2261 GCCATGGAATGTATTATCT-TACTTCTCA-AA-AG-GAGGATCA--A-GATAGCAACGGC 2313
| ||||| |||| || || | || |||| || || || || || | |||||||| |||
Sbjct 2126 GTCATGGCTTGTACTACCTCTCCT-CTCAGAAGAGCGATGACCACTATGATAGCAATGGC 2184
Query 2314 -ACGTCAAGCGATTATC-CTCTGGCAAATGA---ATTAGCAAACGAGATATCC-CAGGAT 2367
|| ||| | | | | || | ||| | | |||||| ||||||||| | |||
Sbjct 2185 GACAACAA-CAAC-A-CGCTAAA-CGAAT-ACCCACCAGCAAATGAGATATCCGC-GGAC 2238
Query 2368 TCATTTAACCCCAAGA-GAA-AGCCAAACCAATCTAAACCACGGCCTGTAGTGGTGAAAC 2425
||||||||| ||||| ||| || || |||||| |||||| | ||||||||||||||||
Sbjct 2239 TCATTTAACAACAAGAAGAAGAGG-AA-CCAATCGAAACCAAGACCTGTAGTGGTGAAAC 2296
Query 2426 TAGACGATGGAGATGAAT 2443
| ||||| || |||||||
Sbjct 2297 TGGACGAAGGGGATGAAT 2314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127721214988
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5