BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G48770.1

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474015 jgi|Araly1|474015|fgenesh2_kg.1__3969__AT1G48770.1         645    0.0  


> Ahg474015 jgi|Araly1|474015|fgenesh2_kg.1__3969__AT1G48770.1
Length=540

 Score =  645 bits (349),  Expect = 0.0
 Identities = 477/532 (90%), Gaps = 36/532 (7%)
 Strand=Plus/Plus

Query  15   TGAAAGATCGAAACGTCTCCACAACTTCTCTTTGCCTCAACTCCGTTGGGGTCAACAAAG  74
            |||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct  18   TGAAAGATCGAAGCGCCTCCACAACTTCTCTTTACCTCATCTCCGTTGGGGTCAACAGAG  77

Query  75   ATTCCTCAGATGCGTCAATCTACCATCTCCTCCTCCTTCTTCTTCCTCTCCCGATCACGC  134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  78   ATTCCTCAGATGCGTCAATCTACCATCTCCTCCTCCTTCTTCTTCCTCTCCCGATCACGC  137

Query  135  AGCCACCAATAGATCCGTCTCCATAGCTGGAGTTTCTCTTACAAgaggaggaggaggagg  194
            ||||||||| ||||||||||||  |  |  ||     | |      ||||||||||||||
Sbjct  138  AGCCACCAACAGATCCGTCTCC--A--T--AG-----C-T------GGAGGAGGAGGAGG  179

Query  195  agCGAAGAACGGGGAGGTAGTTGCGGCGGCTAAGCCATGGAATTTGAGGATGAGAAGAGC  254
            ||||| |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct  180  AGCGAGGAACGGTGAGGTAGTTGCGGCGGCTAGGCCATGGAATCTGAGGATGAGAAGAGC  239

Query  255  TGCGTGTAGTGAACCT-G-GA-G-A--A-----GAA-ATTGAAATTGGCGTTAATAAGAG  302
            |||||||||||||||| | || | |  |     ||| |||||||||||||||||  | ||
Sbjct  240  TGCGTGTAGTGAACCTGGAGATGAATCAGCGGCGAAGATTGAAATTGGCGTTAA-GA-AG  297

Query  303  AAGAAGTATCATCGATAATGAAGATGGAGGAGGAGATAAGAAGAATGAGAAATCGAAATT  362
             ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||
Sbjct  298  -AGAAGTATCATCGATAATGAAGAT---GGAGGAGATAAGAAGAATGAGAAATCGAAATT  353

Query  363  CTCTATTGCGTTGTCGAGAGATGAAATTGAACAAGATTTCTCCTTTGTTTTTGGGAAAAA  422
             |||||| |||||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct  354  ATCTATTTCGTTGTTGAGAGATGAAATTGAACAAGATTTCTCCATTGCTTTTGGGAAAAA  413

Query  423  ACCTCCCAAGAGACCTAAGAAGAGACCAAGGCTTGTTCAGAAGAAATTGAATACGATTTT  482
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  414  ACCTCCAAAGAGACCTAAGAAGAGACCAAGGCTTGTTCAGAAGAAATTGAATACGATTTT  473

Query  483  TCCAGGATTGTGGTTGAATGAAGAAGAAGTGACGATTGATTCGTATAATGGA  534
            ||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  474  TCCAGGATTGTGGTTGAATGAAGAAGAAGTGACTATTGATTCATATAATGGA  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19688283924


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5