BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48780.1
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474016 jgi|Araly1|474016|fgenesh2_kg.1__3970__AT1G48780.1 1144 0.0
> Ahg474016 jgi|Araly1|474016|fgenesh2_kg.1__3970__AT1G48780.1
Length=759
Score = 1144 bits (619), Expect = 0.0
Identities = 723/769 (94%), Gaps = 23/769 (3%)
Strand=Plus/Plus
Query 1 ATGATATGCACAGAGGCTCTTCAGCGGATTTCGTTCTCGAGTGATCTTGGTCAATCGGAT 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATCTGCACAGAGGCTCTTCAGCGGATTTCGTTCTCGAGTGATCTTGGTCAATCGGAT 60
Query 61 AAAGCACCACCACCTGTGATAGAGCCATCAGGCCTTATCCGAAGAGACGAAACTCTTCTT 120
|||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 61 AAAGCACCCCCACCTGTAATAGAACCATCAGGCCTTATCCGAAGAGATGAAACTCTTCTT 120
Query 121 GATTCATCAAACTCGGACTTCGAGTTCCATATCTCAAACAGCTTTGATCCAGGAGACTCC 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 GATTCATCAAACTCGGACTTCGAGTTCCATATCTCAAACAACTTTGATCCAGGAGACTCC 180
Query 181 TCACCAGCGGATGAGATCTTTGCAGACGGTATGATCCTTCCTTTCCATGTAACTGCAGCT 240
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 181 TCACCAGCGGATGAGATCTTTGCGGATGGCATGATCCTTCCTTTCCATGTAACTGCAGCT 240
Query 241 TCGACCGTGCCAAAACGTCTCTACAAGTACGAACTCCCTCCCATTACATCCTCCCTTTCT 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 TCGACCGTGCCAAAACGTCTCTACAAGTACGAACTACCTCCCATTACATCCTCCCTTTCT 300
Query 301 CCATCTCCTCTCTCGCCACAACCGTTACCCACAAAACACAGCGAAAAGGAAACCAACGGG 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 CCATCTCCTCTCTCGCCACAACCGTTGCCCACAAAACACAGCGAAAAGGAAACCAACGGG 360
Query 361 AGAGCAAGTGGAGCAAACTCTGACTCAGAAGCAGAGAAGTCATCAAAGTCGTTTTGGAGT 420
|||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 CGAGCGAGCGGAGCAAACTCTGACTCAGAAGCAGAGAAGTCATCAAAATCGTTTTGGAGT 420
Query 421 TTCAAGAGAAGCTCCAGCCTCAACTGCGACATAAAGAAGAGTCTCATCTGTTCGTTTCCT 480
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCAAGAGAAGCTCGAGCCTAAACTGCGACATAAAGAAGAGTCTCATCTGTTCGTTTCCT 480
Query 481 CGGCTGACAAGAAGCAACTCTACAGGTTCGGTTACTAATTCTAAGAGAGCAATGCTGAGA 540
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGGCTCACGAGAAGCAACTCTACAGGTTCGGTTACTAATTCTAAGAGAGCAATGCTGAGA 540
Query 541 GATGTTAACAACCATAGGCCCTCTTCTCGGTC--CT-CTTGCT------G---CAATGCG 588
|||||||||||||||||||||||||||||||| || ||| || | |||||||
Sbjct 541 GATGTTAACAACCATAGGCCCTCTTCTCGGTCGTCTTCTTCCTCTATCTGTTGCAATGCG 600
Query 589 TATCAGTTCAGACCTCAAAAGCACACAGGAAAGAAAGGTGAAGGAGGAGGAAGCTTCTCC 648
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 601 TATCAGTTCAGACCGCAAAAGCACGCAGGAAAGAAAGGTGAAGGAGGAGGAAGCTTTTC- 659
Query 649 G-TCATTCCAGTCCTCAATGGTCCATCTACATTTGGGTTAGGATCGATCTTACGCCATTC 707
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GATCATTCCAGTCCTCAATGGTCCATCTACATTTGGGTTAGGATCGATCTTACGCCATTC 719
Query 708 GAATTCgaaagataagacgaagacaaagaagaagaagaacaagaagTAG 756
||| | |||||||||||||||||||||||||| ||||||||||
Sbjct 720 GAA----A--GATAAGACGAAGACAAAGAAGAAGAA---CAAGAAGTAG 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27867852327
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5