BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48790.1
Length=2009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474017 jgi|Araly1|474017|fgenesh2_kg.1__3971__AT1G48790.1 3199 0.0
> Ahg474017 jgi|Araly1|474017|fgenesh2_kg.1__3971__AT1G48790.1
Length=1994
Score = 3199 bits (1732), Expect = 0.0
Identities = 1915/2002 (96%), Gaps = 17/2002 (1%)
Strand=Plus/Plus
Query 8 CCCTCGAAAGAAAGTCAAATTACTCAACAGCGTCGTTTCTTCTTGTTTATCGCCAATCGC 67
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 CCCTCGAAAGAAAGTCAAATTACTCAACAGCGTCGTTTCTTCTTGTTCATCGCCAATCGC 60
Query 68 CATTATTATCGCGGTGCCTCTTCTCACCCCTCGCCGTCTCTTTGAACCGGAGGTTTCCTC 127
||||| |||||||||||||||||| || ||||||| ||||||| |||||||||||||||
Sbjct 61 CATTA--ATCGCGGTGCCTCTTCTCTCCTCTCGCCGACTCTTTGGACCGGAGGTTTCCTC 118
Query 128 CACCCTTTGAAAATTCCATCATCGATTGACCTATAGCTACGAGATCTGCTTTTCAATTTG 187
|||||| ||| |||||| |||||||||||||| |||| ||||||||| | |||||||||
Sbjct 119 CACCCTGTGACAATTCCGTCATCGATTGACCTCGAGCTCCGAGATCTGATCTTCAATTTG 178
Query 188 ATGCTCTTCCATTAGTTAGAAAAGTTGCTTTTGA----TC--G--G-AGCAACTATGGGG 238
||||||||||||||| | | |||||||||||||| || | | |||||||||||||
Sbjct 179 ATGCTCTTCCATTAG-TCGGAAAGTTGCTTTTGATTTCTCTTGTCGAAGCAACTATGGGG 237
Query 239 TCGTCTTTTGAGACCATCGATATCGCTACCAGTGCTCGGAGAATTGGCGTAGATAATCGT 298
||||||| ||||| |||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 238 TCGTCTTCTGAGATCATCGATATCGCAACTAGTGCTCGGAGAATTGGCGTAGATAATCGT 297
Query 299 ATTTCTCTCAAATTTTACTTCAGGATCGCTGATAATATCCTCAAACAGGCCAACATATTT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATTTCTCTCAAATTTTACTTCAGGATCGCTGATAATATCCTCAAACAGGCCAACATATTT 357
Query 359 CGGGCAGAGAAGAATGTTATTGATTTATATGTCATGCTTCTGCGGTTTTCAAGCTTGGCT 418
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 358 CGGGCAGAGAAGAATGTTATTGATTTATATGTCATGCTTCTGCGTTTTTCAAGCTTGGCT 417
Query 419 CTCGAGACTATACCGTCCCATCGAGATTACAGAACATCTCTAAAAAGCAATAAAGAGTAT 478
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 CTCGAGACTATACCGTCCCATCGAGATTACAGAACATCTCTAAAAAGCAACAAAGAGTAT 477
Query 479 TTGAGAATGAGACTACTAGATGTCTTGACGGAGCTGGAGAAGTTGAAACCAGTTGTACAG 538
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTGAGAATGAGACTATTGGATGTCTTGACGGAGCTGGAGAAGTTGAAACCAGTTGTACAG 537
Query 539 CAAAGGATTGATGAACTGTATCCCAAGCTCAAACCTCGATATAACGTTCAAGCTCATCCA 598
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 538 CAAAGGATTGATGAACTGTATCCCAAGCTCAAGCCTCGATATAATGTACAAGCTCATCCA 597
Query 599 GCAAATGGTTCCCTAGGCTGGTCTTCTGCCGTGAAACCGTCATTTAATAGCTATGATCAT 658
||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 598 TCAAATGGTTCCCTAGGCTGGTCTTCGGCCGTGAAACCATCATTAAATAGCTATGATCAT 657
Query 659 GCAAAGGTAAGAAATCCTCCTGGACATAATTCTGGCTACATGGGTTCCAGGGGTCAGCAA 718
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 658 GCAAAGGTAAGAAATCCTCCTGGACATAATTTTGGCTACATGGGTTCCAGGGGTCAGCAA 717
Query 719 TTTTTGAACGCTGCACCACTTGAAGAGCGTTTCCGAAAGATGTCGGTGAACTTCCGACCA 778
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTTTTGAATGCTGCACCACTTGAAGAGCGTTTCCGAAAGATGTCGGTGAACTTCCGACCA 777
Query 779 AATGAAGAAACCCTTTCCAAGCATTCTATCTTGGGTCCAGGTGGACTCTCTGCACAGTGG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AATGAAGAAACCCTTTCCAAGCATTCTATCTTGGGTCCAGGTGGACTCTCTGCACAGTGG 837
Query 839 CAGCCACCAAAGTATGATACAAAGGTTCAATATCCAAGCAATATAGATTTTTCGCCTGTT 898
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CAGCCTCCAAAGTATGATACAAAGGTTCAATATCCAAGCAATATAGATTTTTCGCCTGTT 897
Query 899 GTAATCCCAAGCTTCCAACAACTTGTGGACAGCAAACCAATGATAACGAATGGCAGTAAC 958
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTAATCCCAAGCTTCCAACAATTTGTGGACAGCAAACCAATGATAACGAATGGCAGTAAC 957
Query 959 GATGAACCTGAAAAGCCAATTGTGGAACCCAGTGTTGCATCTAATGAAAAAATCCAGAAA 1018
||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||
Sbjct 958 GATGAACCTGAAAGGCCAATTGTGGAACCAAGTGTTGCATCTAGTGAAAATATCCAGAAA 1017
Query 1019 AATTACACTGAAGAGCTTTCTTCCATGATTTCTTTCGAAGAGCCAGAAAGCGTTAATGAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1018 AATTACACTGAAGAGCTTTCTTCCATGATTTCTTTCGAAGAGCCAGAAAGCGTTACTGAT 1077
Query 1079 AACAATCTCATTAGGCAACCTTCACCACCTCCAGTGCTAGCAGAAGTTCAAGACTTGGTT 1138
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1078 AATAATCTCATTAGGCAACCTTCACCACCTCCGGTGCTAGCAGAAGTTCAAGACTTGGTT 1137
Query 1139 CCTGCTTTATGTCCTGAAGTTAGAGAACCGGAATGTATGATAGAAAACTCTCTGCCGGAT 1198
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1138 CCTGCTTTATGTCCTGAAGTTAGAGAACCGGAATGTATCATAGAAAACTCTCTGCCAGAT 1197
Query 1199 GAGTCTCTACGGTCGGAGTCTCCTCTTGAACTTCATATTGCGACTTCAATGATGGATACC 1258
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1198 GAGTCTCTACGGTCGGAGTCTCCTCTTGAACTTCATATTGCAACAACAATGATGGATACC 1257
Query 1259 TTTATGAGGCTTGCCAAGTCAAACACTAAAAAGAATTTAGAGACGTGTGGTATTCTTGCC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1258 TTTATGAGGCTTGCCAAGTCAAACACTAAAAAGAATTTAGAGACGTGTGGTATACTTGCT 1317
Query 1319 GGTTCACTAAAAAACAGAAAATTTTACATTACAGCTCTCATCATACCAAAGCAGGAATCG 1378
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GGCTCACTGAAAAACAGAAAATTTTACATTACAGCTCTCATCATACCAAAGCAGGAATCG 1377
Query 1379 ACATCTGACTCGTGTCAGGCCACGAACGAAGAAGAGATATTTGAAGTACAGGACAAGCAA 1438
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1378 ACATCTGACTCGTGTCAGGCCACAAACGAAGAAGAGATATTTGAAGTACAGGACAAGCAA 1437
Query 1439 TCCCTTTTCCCACTCGGATGGATTCATACGCATCCGACACAGTCTTGTTTCATGTCATCC 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TCCCTTTTCCCACTCGGATGGATTCATACGCATCCGACACAGTCTTGTTTCATGTCATCC 1497
Query 1499 ATTGATGTTCACACACACTATTCATACCAGATTATGTTACCAGAAGCTGTGGCAATCGTT 1558
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1498 ATTGATGTTCACACGCACTATTCATACCAGATTATGTTACCAGAAGCTGTGGCGATCGTT 1557
Query 1559 ATGGCGCCACAAGACTCTTCAAGGAATCACGGAATATTTCGGCTGACGACGCCGGGAGGA 1618
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1558 ATGGCGCCACAAGACTCTTCAAGGAATCACGGAATATTCCGGCTGACGACGCCGGGAGGA 1617
Query 1619 ATGACGGTGATAAGGAATTGTGACCGGCGTGGGTTTCATGCGCACAGTTCACCGGAGGAC 1678
||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 1618 ATGACGGTGATAAGGAATTGTGACCAGCGTGGGTTTCATGCGCACAGTTCGCCGGCGGAC 1677
Query 1679 GGAGGGCCAATTTACAATACCTGTAAGGAAGTTTACATGAACCCAAATCTCAAGTTTGAT 1738
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1678 GGAGGACCAATTTACAATACGTGTAAGGAAGTTTACATGAACCCTAATCTCAAGTTTGAT 1737
Query 1739 GTCATTGATCTCAGATAGCATCACTTGCGCGTTTGAAAGTGAAACTATGTTCTCAAGGCC 1798
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1738 GTCATTGATCTCAGATAGCATCACTTGCGCGTTTGAGAGTGAAACTATGTTCTCAAGGCC 1797
Query 1799 ATCTTTTCTCTACGATTGTAACAATTATGTATCTGTTTATATCCCGATTTTAATATGATC 1858
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 AT-TTT-CTCTACGATTGTAACAATTATGTATCTGTTTATATCCCGATTTTAATATGATT 1855
Query 1859 TACGTAAGTTTTCGTGTACAATAATTATATGTTTACAAGGCTTACATGTAAAACTGAACA 1918
|| |||||||||| |||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 1856 TATGTAAGTTTTCATGTACAAT--T-ATATGTTTACAAGTCTTACATGTAAAACTGAACT 1912
Query 1919 AAAATCAAGATACAAGAGCAAGTGATTTGTGCTAAAGTTATCGTTGTGTCACCATCTATT 1978
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1913 AAAATCAAGATACAAGAGCAAGTGATTTGTGATAAAGTTATCGTTGTGTCACCATCTATT 1972
Query 1979 CAAACCTACGTAATATTTTTAC 2000
||||||||| ||||||| ||||
Sbjct 1973 CAAACCTACATAATATTATTAC 1994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75532955835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5